Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01166

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,283,635	+		CCNA_01165	0.60	-0.5
1,283,658	+		CCNA_01165	0.61	-0.5
1,283,658	+		CCNA_01165	0.61	+2.1
1,283,789	+		CCNA_01165	0.66	+1.1
1,283,803	-		CCNA_01165	0.67	+0.6
1,283,816	+		CCNA_01165	0.67	+3.8
1,283,851	-		CCNA_01165	0.69	+1.1
1,283,862	+		CCNA_01165	0.69	-1.5
1,283,862	+		CCNA_01165	0.69	-0.1
1,283,862	+		CCNA_01165	0.69	+0.1
1,283,980	+		CCNA_01165	0.74	+0.1
1,283,998	+		CCNA_01165	0.75	+0.4
1,284,094	-				+1.1
1,284,094	-		CCNA_01165	0.78	+1.1
1,284,096	+		CCNA_01165	0.79	-1.0
1,284,096	+		CCNA_01165	0.79	+0.6
1,284,096	+		CCNA_01165	0.79	-0.5
1,284,096	+		CCNA_01165	0.79	-0.4
1,284,111	+		CCNA_01165	0.79	-0.2
1,284,121	-		CCNA_01165	0.80	-1.4
1,284,123	+		CCNA_01165	0.80	+0.4
1,284,144	+		CCNA_01165	0.81	+0.8
1,284,144	+		CCNA_01165	0.81	+0.8
1,284,144	+		CCNA_01165	0.81	+1.6
1,284,152	-		CCNA_01165	0.81	-1.1
1,284,152	-		CCNA_01165	0.81	-1.4
1,284,197	+		CCNA_01165	0.83	-0.5
1,284,204	+		CCNA_01165	0.83	+0.3
1,284,295	-		CCNA_01165	0.87	+0.1
1,284,331	+		CCNA_01165	0.88	-0.2
1,284,370	+		CCNA_01165	0.90	-0.4
1,284,427	-				-2.8
1,284,503	+				+0.6
1,284,504	+				-1.8
1,284,514	-				-1.4
1,284,522	+				-0.1
1,284,546	+				-1.2
1,284,640	+				-1.1
1,284,645	+				+1.0
1,284,662	-				-0.7
1,284,670	+				-1.1
1,284,670	+				-1.2
1,284,677	+				+1.6
1,284,678	-				+1.6
1,284,678	-				+0.6
1,284,710	-		CCNA_01166	0.11	-0.9
1,284,744	-		CCNA_01166	0.15	-1.7
1,284,827	+		CCNA_01166	0.25	-1.1
1,284,838	+		CCNA_01166	0.27	-2.5
1,284,846	-		CCNA_01166	0.28	+1.6
1,284,885	+		CCNA_01166	0.33	-1.0
1,284,885	+		CCNA_01166	0.33	-2.1
1,284,912	+		CCNA_01166	0.36	-1.3
1,284,920	-		CCNA_01166	0.37	+2.1
1,284,962	-		CCNA_01166	0.42	-0.5
1,284,967	-		CCNA_01166	0.43	-0.9
1,285,002	+		CCNA_01166	0.47	+1.1
1,285,010	+		CCNA_01166	0.48	+1.6
1,285,037	+		CCNA_01166	0.52	-0.9
1,285,053	-		CCNA_01166	0.54	+0.6
1,285,085	-		CCNA_01166	0.58	-1.8
1,285,131	-		CCNA_01166	0.64	-2.4
1,285,138	+		CCNA_01166	0.64	-2.0
1,285,283	+		CCNA_01166	0.83	+1.1
1,285,291	-		CCNA_01166	0.84	-0.2
1,285,293	+		CCNA_01166	0.84	-0.0
1,285,301	-		CCNA_01166	0.85	-0.4
1,285,324	+		CCNA_01166	0.88	-1.1
1,285,378	-				+0.3
1,285,401	-				+2.1
1,285,428	+				-0.7
1,285,436	-				-0.4
1,285,436	-				-0.0
1,285,436	-				-0.7
1,285,436	-				-0.2
1,285,443	+				+0.6
1,285,466	-				+0.5
1,285,502	-				-0.5
1,285,528	-				+2.6
1,285,538	-		CCNA_01167	0.10	-1.3
1,285,538	-		CCNA_01167	0.10	-1.7
1,285,538	-		CCNA_01167	0.10	+0.3
1,285,558	-		CCNA_01167	0.12	-0.1
1,285,599	+		CCNA_01167	0.15	+1.6
1,285,623	+		CCNA_01167	0.17	-0.3
1,285,623	+		CCNA_01167	0.17	+0.5
1,285,641	-		CCNA_01167	0.19	-0.6
1,285,643	+		CCNA_01167	0.19	+2.6
1,285,643	+		CCNA_01167	0.19	+0.6
1,285,646	-		CCNA_01167	0.19	-1.9
1,285,661	-		CCNA_01167	0.21	-1.3
1,285,683	-		CCNA_01167	0.23	+0.6
1,285,703	-		CCNA_01167	0.24	+0.6
1,285,708	-		CCNA_01167	0.25	-0.2
1,285,708	-		CCNA_01167	0.25	-0.4
1,285,708	-		CCNA_01167	0.25	-0.4
1,285,708	-		CCNA_01167	0.25	-1.4
1,285,722	+		CCNA_01167	0.26	+2.9
1,285,760	+		CCNA_01167	0.29	+0.3
1,285,768	-		CCNA_01167	0.30	+1.1
1,285,788	+		CCNA_01167	0.32	-0.9
1,285,884	+		CCNA_01167	0.40	+1.1
1,285,884	+		CCNA_01167	0.40	-0.5
1,285,884	+		CCNA_01167	0.40	-0.9
1,285,892	-		CCNA_01167	0.40	-1.5
1,285,892	-		CCNA_01167	0.40	+0.3
1,285,892	-		CCNA_01167	0.40	-1.3
1,285,892	-		CCNA_01167	0.40	-1.1
1,285,953	+		CCNA_01167	0.46	-2.3
1,285,958	+		CCNA_01167	0.46	-1.1
1,285,985	+		CCNA_01167	0.48	+1.5
1,285,990	+		CCNA_01167	0.49	-1.2
1,285,994	-		CCNA_01167	0.49	+2.6
1,285,998	-		CCNA_01167	0.50	-1.2
1,285,998	-		CCNA_01167	0.50	-0.2
1,286,089	+		CCNA_01167	0.57	-1.4
1,286,103	-		CCNA_01167	0.59	-0.7
1,286,104	+		CCNA_01167	0.59	-1.2
1,286,125	+		CCNA_01167	0.60	-0.4
1,286,140	+		CCNA_01167	0.62	+1.8
1,286,143	+		CCNA_01167	0.62	+1.3
1,286,171	+		CCNA_01167	0.64	+1.6
1,286,171	+		CCNA_01167	0.64	+0.1
1,286,173	-		CCNA_01167	0.65	+0.6
1,286,176	+		CCNA_01167	0.65	-0.7
1,286,185	-		CCNA_01167	0.66	+0.3
1,286,207	-		CCNA_01167	0.68	-0.5
1,286,265	+		CCNA_01167	0.73	-1.4
1,286,284	+		CCNA_01167	0.74	+1.6
1,286,291	+		CCNA_01167	0.75	+1.1
1,286,291	+		CCNA_01167	0.75	+0.2
1,286,291	+		CCNA_01167	0.75	+0.7
1,286,296	+		CCNA_01167	0.75	-1.1
1,286,299	-		CCNA_01167	0.75	+1.6
1,286,299	-		CCNA_01167	0.75	-0.2
1,286,299	-		CCNA_01167	0.75	-1.3
1,286,310	+		CCNA_01167	0.76	-0.8
1,286,310	+		CCNA_01167	0.76	+0.4
1,286,315	+		CCNA_01167	0.77	-0.0
1,286,318	-		CCNA_01167	0.77	-1.9
1,286,318	-		CCNA_01167	0.77	-0.2
1,286,351	+		CCNA_01167	0.80	-0.2
1,286,351	+		CCNA_01167	0.80	-0.4
1,286,354	+		CCNA_01167	0.80	+0.6
1,286,360	-		CCNA_01167	0.81	+1.1
1,286,389	+		CCNA_01167	0.83	-1.5
1,286,397	-		CCNA_01167	0.84	-0.7
1,286,397	-		CCNA_01167	0.84	+0.2