Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01164

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,279,197	+		CCNA_01163	0.89	+1.8
1,279,204	+		CCNA_01163	0.89	+0.3
1,279,205	-		CCNA_01163	0.89	+1.6
1,279,209	+		CCNA_01163	0.89	+2.0
1,279,217	-		CCNA_01163	0.89	+2.6
1,279,217	-		CCNA_01163	0.89	+0.3
1,279,217	-		CCNA_01163	0.89	-0.4
1,279,245	+		CCNA_01163	0.89	+3.2
1,279,253	-		CCNA_01163	0.90	+0.6
1,279,253	-		CCNA_01163	0.90	+0.6
1,279,253	-		CCNA_01163	0.90	+2.6
1,279,305	+				+2.8
1,279,305	+				+1.3
1,279,305	+				+1.4
1,279,305	+				+1.8
1,279,305	+				+2.0
1,279,305	+				+1.1
1,279,305	+				+1.8
1,279,305	+				+2.2
1,279,305	+				+2.7
1,279,305	+				+2.0
1,279,305	+				+2.3
1,279,305	+				+1.9
1,279,312	+				+2.8
1,279,313	-				-0.4
1,279,313	-				-0.5
1,279,313	-				+0.3
1,279,313	-				+1.1
1,279,313	-				-0.1
1,279,313	-				-0.9
1,279,313	-				+0.8
1,279,313	-				-0.4
1,279,313	-				-0.5
1,279,329	+				+2.4
1,279,329	+				+2.1
1,279,329	+				+2.9
1,279,337	-				+0.3
1,279,401	+				+1.2
1,279,401	+				+1.1
1,279,402	+				+2.0
1,279,449	+				+1.8
1,279,449	+				+3.6
1,279,450	-				-0.9
1,279,504	+				+1.6
1,279,507	-				+0.6
1,279,521	+				+1.8
1,279,545	+				+2.2
1,279,545	+				+2.1
1,279,545	+				+1.4
1,279,545	+				+1.6
1,279,545	+				+1.5
1,279,545	+				+2.5
1,279,546	+				+1.9
1,279,553	-				-0.2
1,279,565	-				+0.6
1,279,570	-				-1.3
1,279,589	-				+0.6
1,279,639	-				+0.6
1,279,661	-				-0.8
1,279,709	-				+2.6
1,279,713	+				+2.7
1,279,713	+				+1.6
1,279,713	+				+2.2
1,279,713	+				+2.1
1,279,713	+				+1.9
1,279,713	+				+3.8
1,279,721	-				+0.5
1,279,721	-				+0.1
1,279,721	-				-0.6
1,279,721	-				-1.6
1,279,721	-				+0.6
1,279,727	+				+3.1
1,279,737	+				+2.3
1,279,737	+				+3.1
1,279,737	+				+2.2
1,279,737	+				+3.3
1,279,737	+				+2.5
1,279,737	+				+2.3
1,279,737	+				+2.9
1,279,737	+				+2.1
1,279,737	+				+2.3
1,279,745	-				+0.1
1,279,745	-				-0.3
1,279,745	-				-0.4
1,279,745	-				-1.4
1,279,745	-				+0.8
1,279,745	-				+0.1
1,279,745	-				-0.8
1,279,752	-				+0.6
1,279,757	-				-0.6
1,279,763	+				+1.4
1,279,770	+				+2.1
1,279,771	-				-2.0
1,279,800	-				+2.6
1,279,802	+				+2.2
1,279,807	-				-0.2
1,279,807	-				-0.7
1,279,810	-				+0.6
1,279,816	+				+2.0
1,279,839	-				+1.1
1,279,857	+				+3.0
1,279,865	-				-0.2
1,279,866	+				+2.9
1,279,866	+				+4.5
1,279,874	-				+2.6
1,279,874	-				+1.1
1,279,874	-				+0.3
1,279,874	-				+0.6
1,279,876	+				+2.7
1,279,884	-				-0.5
1,279,953	+				+3.3
1,279,954	-				-2.2
1,279,960	+				+3.2
1,279,961	-				-0.9
1,279,996	+				+3.0
1,280,006	+				+3.3
1,280,006	+				+2.9
1,280,014	-				+1.6
1,280,014	-				-1.5
1,280,074	+				+1.1
1,280,100	+				+1.2
1,280,143	+				-0.4
1,280,144	+				+2.1
1,280,179	+				+0.5
1,280,187	-				+0.1
1,280,199	-				-0.8
1,280,300	+				+4.0
1,280,305	+				+1.7
1,280,322	-				+1.6
1,280,326	+				+1.6
1,280,326	+				+0.1
1,280,339	-				-0.9
1,280,340	+				+0.4
1,280,347	+				-1.2
1,280,352	+				+0.1
1,280,352	+				+1.2
1,280,360	+				+2.3
1,280,360	+				-2.7
1,280,418	+		CCNA_01164	0.12	+1.9
1,280,440	-		CCNA_01164	0.13	-0.5
1,280,440	-		CCNA_01164	0.13	-1.2
1,280,458	+		CCNA_01164	0.14	-0.4
1,280,478	+		CCNA_01164	0.15	+2.2
1,280,557	-		CCNA_01164	0.19	+1.3
1,280,559	+		CCNA_01164	0.19	+3.0
1,280,559	+		CCNA_01164	0.19	+1.1
1,280,567	-		CCNA_01164	0.19	+0.6
1,280,567	-		CCNA_01164	0.19	+1.6
1,280,567	-		CCNA_01164	0.19	-0.4
1,280,584	-		CCNA_01164	0.20	-0.2
1,280,586	+		CCNA_01164	0.20	+0.9
1,280,653	-		CCNA_01164	0.23	+0.3
1,280,722	+		CCNA_01164	0.27	+1.3
1,280,746	-		CCNA_01164	0.28	-0.4
1,280,763	+		CCNA_01164	0.29	-0.5
1,280,781	-		CCNA_01164	0.30	+4.3
1,280,781	-		CCNA_01164	0.30	+4.3
1,280,782	+		CCNA_01164	0.30	+0.8
1,280,782	+		CCNA_01164	0.30	+2.2
1,280,789	-		CCNA_01164	0.30	+2.6
1,280,808	+		CCNA_01164	0.31	-0.2
1,280,864	+		CCNA_01164	0.34	+0.5
1,280,864	+		CCNA_01164	0.34	+1.0
1,280,872	-		CCNA_01164	0.34	+0.1
1,280,879	+		CCNA_01164	0.34	+2.5
1,280,951	-		CCNA_01164	0.38	-0.6
1,280,951	-		CCNA_01164	0.38	-0.5
1,280,951	-		CCNA_01164	0.38	-1.1
1,280,990	+		CCNA_01164	0.40	+0.4
1,280,991	-		CCNA_01164	0.40	+0.2
1,281,010	+		CCNA_01164	0.41	+3.0
1,281,010	+		CCNA_01164	0.41	-0.7
1,281,013	-		CCNA_01164	0.41	-0.4
1,281,013	-		CCNA_01164	0.41	-1.2
1,281,013	-		CCNA_01164	0.41	+1.3
1,281,016	+		CCNA_01164	0.41	+2.0
1,281,016	+		CCNA_01164	0.41	+0.9
1,281,016	+		CCNA_01164	0.41	+0.6
1,281,016	+		CCNA_01164	0.41	+0.4
1,281,023	+		CCNA_01164	0.42	-0.5
1,281,031	-		CCNA_01164	0.42	+0.6
1,281,063	-		CCNA_01164	0.44	+0.6
1,281,065	+		CCNA_01164	0.44	-0.7
1,281,073	-		CCNA_01164	0.44	-0.8
1,281,079	+		CCNA_01164	0.44	+1.4
1,281,145	-		CCNA_01164	0.48	-2.1
1,281,185	+		CCNA_01164	0.50	+2.5
1,281,206	+		CCNA_01164	0.51	+2.4
1,281,243	-		CCNA_01164	0.53	+0.6
1,281,249	+		CCNA_01164	0.53	+1.1
1,281,258	+		CCNA_01164	0.53	+2.0
1,281,262	-		CCNA_01164	0.53	-0.8
1,281,278	+		CCNA_01164	0.54	+1.1
1,281,323	-		CCNA_01164	0.56	+1.1
1,281,325	+		CCNA_01164	0.57	+2.0
1,281,334	+		CCNA_01164	0.57	+1.2
1,281,334	+		CCNA_01164	0.57	+1.6
1,281,428	+		CCNA_01164	0.62	+1.5
1,281,532	-		CCNA_01164	0.67	-0.4
1,281,580	+		CCNA_01164	0.69	+2.0
1,281,591	+		CCNA_01164	0.70	+0.5
1,281,617	+		CCNA_01164	0.71	+1.6
1,281,648	-		CCNA_01164	0.73	-0.2
1,281,656	-		CCNA_01164	0.73	+1.4
1,281,705	-		CCNA_01164	0.75	-0.6
1,281,731	+		CCNA_01164	0.77	+1.6
1,281,735	+		CCNA_01164	0.77	+1.5
1,281,749	+		CCNA_01164	0.78	+1.7
1,281,757	-		CCNA_01164	0.78	-0.5
1,281,757	-		CCNA_01164	0.78	+1.6
1,281,757	-		CCNA_01164	0.78	+0.1
1,281,784	+		CCNA_01164	0.79	+2.1
1,281,792	-		CCNA_01164	0.80	-1.6
1,281,807	+		CCNA_01164	0.80	+1.6
1,281,826	+		CCNA_01164	0.81	+2.4
1,281,827	+		CCNA_01164	0.81	+1.3
1,281,827	+		CCNA_01164	0.81	+0.7
1,281,849	+		CCNA_01164	0.83	+1.7
1,281,880	-		CCNA_01164	0.84	+1.6
1,281,895	+		CCNA_01164	0.85	+1.7
1,281,923	+		CCNA_01164	0.86	+0.1
1,281,953	-		CCNA_01164	0.88	-0.5
1,281,966	+		CCNA_01164	0.88	-1.0
1,281,976	+		CCNA_01164	0.89	+1.6
1,281,976	+		CCNA_01164	0.89	+1.8
1,281,996	-		CCNA_01164	0.90	+0.6
1,282,000	+				+1.3
1,282,005	+				+1.2
1,282,008	-				-0.4
1,282,111	+				+2.2
1,282,114	-				+1.1
1,282,116	+				+0.7
1,282,157	-				-1.1
1,282,185	-				+0.3
1,282,187	+				+1.6
1,282,187	+				+2.6
1,282,195	-				-0.8
1,282,195	-				-0.4
1,282,220	+				+1.0
1,282,228	-				-1.4
1,282,235	+				+0.6
1,282,235	+				+2.1
1,282,243	-				+1.1
1,282,251	-				-0.2
1,282,288	-				+2.6
1,282,295	+				+0.4
1,282,329	+				+1.3
1,282,366	+				+0.5
1,282,391	-				-1.3
1,282,425	+		CCNA_01165	0.10	+0.1
1,282,446	+		CCNA_01165	0.11	-0.8
1,282,464	+		CCNA_01165	0.12	+0.8
1,282,533	+		CCNA_01165	0.14	+1.1
1,282,542	+		CCNA_01165	0.15	-0.1
1,282,640	+		CCNA_01165	0.19	+0.8
1,282,643	-		CCNA_01165	0.19	-1.1
1,282,648	-		CCNA_01165	0.19	+0.3
1,282,750	+		CCNA_01165	0.23	+2.6
1,282,761	+		CCNA_01165	0.24	+0.4
1,282,820	-		CCNA_01165	0.26	+0.5
1,282,836	+		CCNA_01165	0.27	+1.2
1,282,845	+		CCNA_01165	0.27	-0.4
1,282,852	+		CCNA_01165	0.28	+0.3
1,282,853	-		CCNA_01165	0.28	-1.1
1,282,853	-		CCNA_01165	0.28	+2.6
1,282,905	+		CCNA_01165	0.30	+0.3
1,282,905	+		CCNA_01165	0.30	-0.9
1,282,954	+		CCNA_01165	0.32	-1.3
1,282,975	+		CCNA_01165	0.33	-0.4
1,282,978	-		CCNA_01165	0.33	-0.4
1,282,980	+		CCNA_01165	0.33	+0.3
1,282,983	-		CCNA_01165	0.33	-0.4
1,283,051	-		CCNA_01165	0.36	-0.5
1,283,067	+		CCNA_01165	0.36	-0.1
1,283,095	+		CCNA_01165	0.38	-1.4
1,283,095	+		CCNA_01165	0.38	-2.2
1,283,095	+		CCNA_01165	0.38	-0.4
1,283,112	+		CCNA_01165	0.38	+0.3
1,283,172	-		CCNA_01165	0.41	-0.9
1,283,180	+		CCNA_01165	0.41	-1.2
1,283,188	+		CCNA_01165	0.41	-0.5
1,283,188	-		CCNA_01165	0.41	+0.6
1,283,190	+		CCNA_01165	0.41	+0.7
1,283,196	-		CCNA_01165	0.42	+0.6