Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01138

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,239,939	+		CCNA_01136	0.60	-0.9
1,239,947	-		CCNA_01136	0.61	-0.7
1,239,966	+		CCNA_01136	0.64	-1.8
1,239,966	+		CCNA_01136	0.64	-1.4
1,239,976	+		CCNA_01136	0.65	+1.0
1,239,976	+		CCNA_01136	0.65	+0.4
1,239,976	+		CCNA_01136	0.65	-1.7
1,239,976	+		CCNA_01136	0.65	+0.6
1,239,984	-		CCNA_01136	0.66	+0.0
1,239,984	-		CCNA_01136	0.66	-0.2
1,239,984	-		CCNA_01136	0.66	+0.3
1,239,984	-		CCNA_01136	0.66	-0.6
1,239,984	-		CCNA_01136	0.66	-1.1
1,239,984	-		CCNA_01136	0.66	-0.2
1,239,984	-		CCNA_01136	0.66	+0.0
1,239,984	-		CCNA_01136	0.66	-0.6
1,239,989	-		CCNA_01136	0.66	+0.3
1,240,000	-		CCNA_01136	0.67	-0.7
1,240,028	+		CCNA_01136	0.70	-2.1
1,240,036	-		CCNA_01136	0.71	+0.7
1,240,066	-		CCNA_01136	0.75	+2.6
1,240,068	-		CCNA_01136	0.75	-0.9
1,240,109	-		CCNA_01136	0.80	-2.0
1,240,129	+		CCNA_01136	0.82	-0.2
1,240,132	-		CCNA_01136	0.82	+0.0
1,240,145	+		CCNA_01136	0.84	+1.0
1,240,195	+		CCNA_01136	0.89	-0.7
1,240,195	+		CCNA_01136	0.89	+1.0
1,240,195	+		CCNA_01136	0.89	-1.3
1,240,195	+		CCNA_01136	0.89	-1.9
1,240,210	+				+0.6
1,240,234	-				+1.0
1,240,254	+				+0.3
1,240,254	+				+0.3
1,240,338	+				-2.2
1,240,370	+				+0.0
1,240,378	-				-1.4
1,240,383	-				+0.9
1,240,398	+				-1.2
1,240,411	+		CCNA_01137	0.12	-0.6
1,240,477	-		CCNA_01137	0.25	-0.7
1,240,498	+		CCNA_01137	0.29	+1.0
1,240,506	-		CCNA_01137	0.30	-0.1
1,240,506	-		CCNA_01137	0.30	+0.0
1,240,528	+		CCNA_01137	0.35	-0.7
1,240,570	-		CCNA_01137	0.43	-0.1
1,240,572	-		CCNA_01137	0.43	-1.8
1,240,573	+		CCNA_01137	0.43	-1.6
1,240,593	-		CCNA_01137	0.47	-1.0
1,240,625	+		CCNA_01137	0.53	-0.2
1,240,659	+		CCNA_01137	0.60	-0.6
1,240,667	-		CCNA_01137	0.61	-1.4
1,240,683	+		CCNA_01137	0.64	+0.6
1,240,691	-		CCNA_01137	0.66	-0.7
1,240,691	-		CCNA_01137	0.66	-2.5
1,240,691	-		CCNA_01137	0.66	+0.3
1,240,700	-		CCNA_01137	0.68	+0.8
1,240,708	+		CCNA_01137	0.69	+0.0
1,240,741	+		CCNA_01137	0.75	-0.0
1,240,770	-		CCNA_01137	0.81	-0.7
1,240,770	-		CCNA_01137	0.81	-0.7
1,240,800	-		CCNA_01137	0.87	-1.6
1,240,809	-		CCNA_01137	0.89	+0.3
1,240,809	-		CCNA_01137	0.89	+0.6
1,240,840	-				-1.4
1,240,841	-				-1.9
1,240,853	+				+0.6
1,240,853	+				-2.0
1,240,856	-				+1.3
1,240,856	-				-0.1
1,240,861	-				+1.6
1,240,874	-				+0.6
1,240,905	+				-0.2
1,240,920	-				-2.1
1,240,922	+				-2.4
1,240,942	-				-0.8
1,240,969	+				+0.6
1,241,033	-		CCNA_01138	0.25	-1.3
1,241,069	-		CCNA_01138	0.35	+0.6
1,241,140	-		CCNA_01138	0.54	-1.7
1,241,140	-		CCNA_01138	0.54	-0.7
1,241,147	+		CCNA_01138	0.56	+2.6
1,241,147	+		CCNA_01138	0.56	-1.1
1,241,153	-		CCNA_01138	0.57	-0.8
1,241,155	-		CCNA_01138	0.58	-0.6
1,241,160	+		CCNA_01138	0.59	+1.6
1,241,192	-		CCNA_01138	0.67	+0.3
1,241,212	-		CCNA_01138	0.73	-1.1
1,241,218	-		CCNA_01138	0.74	-0.2
1,241,225	+		CCNA_01138	0.76	-1.4
1,241,241	-		CCNA_01138	0.80	+0.0
1,241,241	-		CCNA_01138	0.80	-1.1
1,241,249	-		CCNA_01138	0.83	-1.3
1,241,308	+				-1.3
1,241,321	+				-1.5
1,241,331	-				+1.0
1,241,357	+				-0.5
1,241,375	+				+0.5
1,241,375	-				+1.6
1,241,400	+				+1.6
1,241,496	-				-0.9
1,241,540	-				-1.6
1,241,542	-				+1.6
1,241,581	+				+0.1
1,241,592	+				+0.5
1,241,612	+				+3.0
1,241,612	+		CCNA_01139	0.11	+1.3
1,241,612	+		CCNA_01139	0.11	+0.5
1,241,618	+		CCNA_01139	0.11	+0.7
1,241,618	+		CCNA_01139	0.11	+0.0
1,241,618	+		CCNA_01139	0.11	+1.0
1,241,620	-		CCNA_01139	0.11	+1.0
1,241,625	+		CCNA_01139	0.11	-0.2
1,241,626	-		CCNA_01139	0.11	+0.3
1,241,626	-		CCNA_01139	0.11	+0.6
1,241,626	-		CCNA_01139	0.11	-0.2
1,241,626	-		CCNA_01139	0.11	-0.8
1,241,626	-		CCNA_01139	0.11	+0.4
1,241,626	-		CCNA_01139	0.11	+1.0
1,241,659	+		CCNA_01139	0.13	+0.0
1,241,677	-		CCNA_01139	0.14	+2.7
1,241,752	-		CCNA_01139	0.18	+1.1
1,241,752	-		CCNA_01139	0.18	+0.8
1,241,759	-		CCNA_01139	0.19	+0.6
1,241,765	-		CCNA_01139	0.19	-0.2
1,241,778	+		CCNA_01139	0.20	+1.1
1,241,800	+		CCNA_01139	0.21	-0.8
1,241,822	-		CCNA_01139	0.22	-0.5
1,241,883	+		CCNA_01139	0.25	+1.3
1,241,884	+		CCNA_01139	0.26	+0.1
1,241,888	+		CCNA_01139	0.26	+1.1
1,241,891	-		CCNA_01139	0.26	-0.5
1,241,907	+		CCNA_01139	0.27	+1.0
1,241,908	-		CCNA_01139	0.27	-0.4
1,241,918	+		CCNA_01139	0.27	+0.3
1,241,984	+		CCNA_01139	0.31	-1.3
1,241,988	-		CCNA_01139	0.31	+1.1
1,241,992	-		CCNA_01139	0.31	+3.6
1,241,998	+		CCNA_01139	0.32	+0.1
1,242,004	-		CCNA_01139	0.32	+1.6
1,242,006	-		CCNA_01139	0.32	+1.6
1,242,041	+		CCNA_01139	0.34	-0.9
1,242,041	+		CCNA_01139	0.34	+0.8
1,242,049	-		CCNA_01139	0.35	-1.8
1,242,078	+		CCNA_01139	0.36	+1.3
1,242,078	+		CCNA_01139	0.36	-0.2
1,242,086	-		CCNA_01139	0.37	-0.2
1,242,086	-		CCNA_01139	0.37	+1.1
1,242,091	-		CCNA_01139	0.37	+0.6
1,242,110	+		CCNA_01139	0.38	+0.3
1,242,110	+		CCNA_01139	0.38	+1.1
1,242,110	+		CCNA_01139	0.38	+0.5
1,242,123	+		CCNA_01139	0.39	-2.0
1,242,154	-		CCNA_01139	0.40	-1.2
1,242,200	+		CCNA_01139	0.43	+1.5
1,242,208	-		CCNA_01139	0.43	+0.3
1,242,208	-		CCNA_01139	0.43	-0.4
1,242,234	-		CCNA_01139	0.45	+1.6
1,242,237	+		CCNA_01139	0.45	-0.1
1,242,245	-		CCNA_01139	0.45	+1.1
1,242,295	-		CCNA_01139	0.48	+1.6
1,242,298	-		CCNA_01139	0.48	-0.2
1,242,311	-		CCNA_01139	0.49	-0.4