Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01120

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,223,192	+				-2.0
1,223,192	+				-0.6
1,223,198	-				-1.9
1,223,200	-				+0.4
1,223,228	+				+2.6
1,223,228	+				+1.0
1,223,284	-				+1.6
1,223,341	+		CCNA_01118	0.23	-0.6
1,223,369	+		CCNA_01118	0.32	-1.0
1,223,369	+		CCNA_01118	0.32	-0.8
1,223,377	-		CCNA_01118	0.34	+0.6
1,223,395	+		CCNA_01118	0.40	+0.3
1,223,587	+				+2.4
1,223,587	+				+2.1
1,223,587	+				+1.7
1,223,587	+				+1.9
1,223,587	+				+2.7
1,223,590	-				+0.4
1,223,595	-				+3.2
1,223,595	-				-1.1
1,223,595	-				-0.8
1,223,608	+				+0.0
1,223,614	-				-0.7
1,223,616	-				-2.5
1,223,616	-				+0.0
1,223,631	+				-1.2
1,223,639	-				-1.2
1,223,639	-				-0.2
1,223,662	-				-0.4
1,223,684	-				-1.3
1,223,685	+				+0.4
1,223,685	+				+0.4
1,223,685	+				+0.7
1,223,685	+				+0.3
1,223,693	-				+1.6
1,223,693	-				-0.2
1,223,695	+				+1.6
1,223,697	+				-0.0
1,223,703	-				-0.7
1,223,703	-				+0.6
1,223,703	-				-1.4
1,223,703	-				+0.6
1,223,746	+				+0.8
1,223,746	+				-0.3
1,223,746	+				+0.0
1,223,746	+				-1.3
1,223,754	-				-0.4
1,223,754	-				+0.6
1,223,754	-				+1.6
1,223,754	-				+0.0
1,223,822	-		CCNA_01119	0.26	-1.2
1,223,835	-		CCNA_01119	0.30	+1.0
1,223,839	+		CCNA_01119	0.31	+1.3
1,223,846	+		CCNA_01119	0.33	+0.9
1,223,847	-		CCNA_01119	0.33	-1.1
1,223,867	+		CCNA_01119	0.38	+2.6
1,223,894	-		CCNA_01119	0.45	+0.3
1,223,901	-		CCNA_01119	0.47	+0.3
1,223,928	+		CCNA_01119	0.54	+2.6
1,223,951	-		CCNA_01119	0.60	+0.3
1,223,951	-		CCNA_01119	0.60	+2.6
1,224,013	-		CCNA_01119	0.76	-0.7
1,224,042	-		CCNA_01119	0.84	+1.0
1,224,062	-		CCNA_01119	0.89	-0.7
1,224,078	+				-0.8
1,224,097	+				-1.2
1,224,118	+				-0.6
1,224,135	+				-0.2
1,224,135	+				-0.6
1,224,143	-				-1.5
1,224,145	+				-1.4
1,224,153	+				+2.3
1,224,240	-		CCNA_01120	0.38	-1.6
1,224,247	+		CCNA_01120	0.43	-1.7
1,224,259	+		CCNA_01120	0.52	-0.7
1,224,279	-		CCNA_01120	0.67	+1.6
1,224,313	-				+0.6
1,224,356	-				-1.0
1,224,369	+				-1.0
1,224,442	-				-0.4
1,224,451	+				-0.6
1,224,496	+				-1.0
1,224,537	-				+0.3
1,224,540	-				-0.2
1,224,545	-				+0.4
1,224,574	+				-0.6
1,224,582	-				-2.4
1,224,608	-				+0.4
1,224,608	-				+1.0
1,224,630	-				-0.6
1,224,677	-		CCNA_01121	0.12	-0.6
1,224,690	+		CCNA_01121	0.13	+0.0
1,224,718	+		CCNA_01121	0.15	-0.1
1,224,723	+		CCNA_01121	0.15	+2.3
1,224,723	+		CCNA_01121	0.15	+1.0
1,224,723	+		CCNA_01121	0.15	+0.3
1,224,723	+		CCNA_01121	0.15	-0.2
1,224,731	-		CCNA_01121	0.16	+0.6
1,224,731	-		CCNA_01121	0.16	+1.6
1,224,731	-		CCNA_01121	0.16	-0.9
1,224,813	+		CCNA_01121	0.21	-0.7
1,224,861	+		CCNA_01121	0.24	+1.6
1,224,868	+		CCNA_01121	0.25	+1.0
1,224,871	-		CCNA_01121	0.25	+1.6
1,224,876	-		CCNA_01121	0.25	-0.2
1,224,885	-		CCNA_01121	0.26	+1.0
1,224,899	-		CCNA_01121	0.27	+0.9
1,224,901	+		CCNA_01121	0.27	-0.9
1,224,908	+		CCNA_01121	0.27	-0.6
1,224,908	+		CCNA_01121	0.27	-0.6
1,224,916	+		CCNA_01121	0.28	+0.4
1,224,916	+		CCNA_01121	0.28	-0.6
1,224,916	+		CCNA_01121	0.28	+0.8
1,224,926	+		CCNA_01121	0.29	-2.2
1,224,960	-		CCNA_01121	0.31	+1.6
1,224,966	-		CCNA_01121	0.31	+1.0
1,224,972	+		CCNA_01121	0.32	+1.6
1,224,972	+		CCNA_01121	0.32	+0.3
1,224,980	-		CCNA_01121	0.32	+0.0
1,224,980	-		CCNA_01121	0.32	+1.6
1,225,006	-		CCNA_01121	0.34	-1.8
1,225,042	+		CCNA_01121	0.36	-0.4
1,225,042	+		CCNA_01121	0.36	+0.0
1,225,044	+				+1.6
1,225,047	-		CCNA_01121	0.37	+0.3
1,225,052	+		CCNA_01121	0.37	+1.6
1,225,052	+		CCNA_01121	0.37	-1.5
1,225,052	+		CCNA_01121	0.37	-1.1
1,225,052	+		CCNA_01121	0.37	-1.7
1,225,052	+				+0.6
1,225,122	+		CCNA_01121	0.42	+0.4
1,225,129	+		CCNA_01121	0.42	-0.9
1,225,134	+		CCNA_01121	0.42	-1.3
1,225,137	-		CCNA_01121	0.43	-0.4
1,225,151	+		CCNA_01121	0.43	-0.7
1,225,151	+		CCNA_01121	0.43	-1.5
1,225,151	+		CCNA_01121	0.43	-0.2
1,225,159	-		CCNA_01121	0.44	-0.4
1,225,245	+		CCNA_01121	0.50	+0.3
1,225,263	+		CCNA_01121	0.51	+0.4
1,225,264	+		CCNA_01121	0.51	-1.0
1,225,291	+		CCNA_01121	0.53	-0.3
1,225,309	-		CCNA_01121	0.54	-1.9