Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01118

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,222,276	+				+1.9
1,222,276	+				+1.2
1,222,284	-				-1.0
1,222,284	-				-0.4
1,222,286	+				-0.5
1,222,286	+				+0.4
1,222,304	-				+1.7
1,222,348	+				+0.3
1,222,375	-				-1.9
1,222,417	-		CCNA_01117	0.13	+1.0
1,222,424	+		CCNA_01117	0.13	+0.3
1,222,443	-		CCNA_01117	0.15	-0.1
1,222,469	+		CCNA_01117	0.18	-2.3
1,222,475	+		CCNA_01117	0.19	-2.2
1,222,496	+		CCNA_01117	0.21	-0.7
1,222,496	+		CCNA_01117	0.21	+1.2
1,222,505	+		CCNA_01117	0.22	-0.8
1,222,546	-		CCNA_01117	0.27	-0.9
1,222,546	-		CCNA_01117	0.27	-0.4
1,222,546	-		CCNA_01117	0.27	-0.8
1,222,551	-		CCNA_01117	0.28	+2.0
1,222,553	+		CCNA_01117	0.28	-1.6
1,222,642	+		CCNA_01117	0.38	-1.5
1,222,649	+		CCNA_01117	0.39	+1.2
1,222,650	-		CCNA_01117	0.39	+1.0
1,222,650	-		CCNA_01117	0.39	+2.1
1,222,668	+		CCNA_01117	0.41	-1.2
1,222,668	+		CCNA_01117	0.41	+0.2
1,222,687	+		CCNA_01117	0.43	+2.6
1,222,687	+		CCNA_01117	0.43	+2.6
1,222,695	-		CCNA_01117	0.44	-2.6
1,222,695	-		CCNA_01117	0.44	-2.2
1,222,695	-		CCNA_01117	0.44	+0.3
1,222,695	-		CCNA_01117	0.44	-0.4
1,222,695	-		CCNA_01117	0.44	-1.0
1,222,695	-		CCNA_01117	0.44	-0.4
1,222,695	-		CCNA_01117	0.44	-0.2
1,222,706	+		CCNA_01117	0.45	+0.0
1,222,726	+		CCNA_01117	0.47	+1.6
1,222,758	+		CCNA_01117	0.51	-1.4
1,222,770	+		CCNA_01117	0.52	-0.8
1,222,818	+		CCNA_01117	0.58	+2.6
1,222,826	-		CCNA_01117	0.58	-1.1
1,222,840	-		CCNA_01117	0.60	+0.6
1,222,859	-		CCNA_01117	0.62	+1.0
1,222,878	+		CCNA_01117	0.64	+1.6
1,222,937	-		CCNA_01117	0.71	+1.9
1,222,952	-		CCNA_01117	0.73	-0.4
1,222,976	-		CCNA_01117	0.75	+0.3
1,223,014	+		CCNA_01117	0.80	-0.1
1,223,129	-				+0.0
1,223,170	+				-0.2
1,223,192	+				-2.0
1,223,192	+				-0.6
1,223,198	-				-1.9
1,223,200	-				+0.4
1,223,228	+				+2.6
1,223,228	+				+1.0
1,223,284	-				+1.6
1,223,341	+		CCNA_01118	0.23	-0.6
1,223,369	+		CCNA_01118	0.32	-1.0
1,223,369	+		CCNA_01118	0.32	-0.8
1,223,377	-		CCNA_01118	0.34	+0.6
1,223,395	+		CCNA_01118	0.40	+0.3
1,223,587	+				+2.4
1,223,587	+				+2.1
1,223,587	+				+1.7
1,223,587	+				+1.9
1,223,587	+				+2.7
1,223,590	-				+0.4
1,223,595	-				+3.2
1,223,595	-				-1.1
1,223,595	-				-0.8
1,223,608	+				+0.0
1,223,614	-				-0.7
1,223,616	-				-2.5
1,223,616	-				+0.0
1,223,631	+				-1.2
1,223,639	-				-1.2
1,223,639	-				-0.2
1,223,662	-				-0.4
1,223,684	-				-1.3
1,223,685	+				+0.4
1,223,685	+				+0.4
1,223,685	+				+0.7
1,223,685	+				+0.3
1,223,693	-				+1.6
1,223,693	-				-0.2
1,223,695	+				+1.6
1,223,697	+				-0.0
1,223,703	-				-0.7
1,223,703	-				+0.6
1,223,703	-				-1.4
1,223,703	-				+0.6
1,223,746	+				+0.8
1,223,746	+				-0.3
1,223,746	+				+0.0
1,223,746	+				-1.3
1,223,754	-				-0.4
1,223,754	-				+0.6
1,223,754	-				+1.6
1,223,754	-				+0.0
1,223,822	-		CCNA_01119	0.26	-1.2
1,223,835	-		CCNA_01119	0.30	+1.0
1,223,839	+		CCNA_01119	0.31	+1.3
1,223,846	+		CCNA_01119	0.33	+0.9
1,223,847	-		CCNA_01119	0.33	-1.1
1,223,867	+		CCNA_01119	0.38	+2.6
1,223,894	-		CCNA_01119	0.45	+0.3
1,223,901	-		CCNA_01119	0.47	+0.3
1,223,928	+		CCNA_01119	0.54	+2.6
1,223,951	-		CCNA_01119	0.60	+0.3
1,223,951	-		CCNA_01119	0.60	+2.6
1,224,013	-		CCNA_01119	0.76	-0.7
1,224,042	-		CCNA_01119	0.84	+1.0
1,224,062	-		CCNA_01119	0.89	-0.7
1,224,078	+				-0.8
1,224,097	+				-1.2
1,224,118	+				-0.6
1,224,135	+				-0.2
1,224,135	+				-0.6
1,224,143	-				-1.5
1,224,145	+				-1.4
1,224,153	+				+2.3
1,224,240	-		CCNA_01120	0.38	-1.6
1,224,247	+		CCNA_01120	0.43	-1.7
1,224,259	+		CCNA_01120	0.52	-0.7
1,224,279	-		CCNA_01120	0.67	+1.6
1,224,313	-				+0.6
1,224,356	-				-1.0
1,224,369	+				-1.0
1,224,442	-				-0.4
1,224,451	+				-0.6
1,224,496	+				-1.0
1,224,537	-				+0.3
1,224,540	-				-0.2
1,224,545	-				+0.4
1,224,574	+				-0.6
1,224,582	-				-2.4