Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01091

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,196,739	-		CCNA_01090	0.33	+0.4
1,196,739	-		CCNA_01090	0.33	+0.4
1,196,776	+		CCNA_01090	0.36	+0.6
1,196,784	-		CCNA_01090	0.36	+1.1
1,196,784	-		CCNA_01090	0.36	-0.4
1,196,799	+		CCNA_01090	0.37	+1.0
1,196,808	-		CCNA_01090	0.38	+0.6
1,196,818	-		CCNA_01090	0.39	+1.6
1,196,818	-		CCNA_01090	0.39	-0.6
1,196,834	+		CCNA_01090	0.40	-2.2
1,196,865	+		CCNA_01090	0.42	+2.6
1,196,866	+		CCNA_01090	0.42	-0.0
1,196,866	+		CCNA_01090	0.42	+1.6
1,196,866	+		CCNA_01090	0.42	-1.0
1,196,872	+		CCNA_01090	0.43	+1.2
1,196,873	-		CCNA_01090	0.43	+1.4
1,196,873	-		CCNA_01090	0.43	-1.2
1,196,874	-		CCNA_01090	0.43	-0.2
1,196,885	-		CCNA_01090	0.43	-0.7
1,196,894	+		CCNA_01090	0.44	+0.6
1,196,929	-		CCNA_01090	0.47	-0.0
1,196,948	-		CCNA_01090	0.48	-1.3
1,197,001	-		CCNA_01090	0.52	+0.6
1,197,003	-		CCNA_01090	0.52	+0.3
1,197,012	-		CCNA_01090	0.53	+0.9
1,197,014	-		CCNA_01090	0.53	-0.8
1,197,035	+		CCNA_01090	0.54	+0.2
1,197,043	-		CCNA_01090	0.55	-0.5
1,197,048	-		CCNA_01090	0.55	+1.8
1,197,048	-		CCNA_01090	0.55	-0.3
1,197,083	+		CCNA_01090	0.58	-0.0
1,197,129	-		CCNA_01090	0.61	-0.2
1,197,159	-		CCNA_01090	0.63	-1.3
1,197,179	+		CCNA_01090	0.65	+0.8
1,197,199	+		CCNA_01090	0.66	-1.3
1,197,219	+		CCNA_01090	0.68	-2.1
1,197,233	+		CCNA_01090	0.69	-1.0
1,197,261	-		CCNA_01090	0.71	+0.7
1,197,281	-		CCNA_01090	0.72	-0.5
1,197,306	+		CCNA_01090	0.74	-0.4
1,197,322	-		CCNA_01090	0.75	-0.6
1,197,355	+		CCNA_01090	0.78	-2.1
1,197,362	+		CCNA_01090	0.78	+1.0
1,197,363	-		CCNA_01090	0.78	-1.5
1,197,405	-		CCNA_01090	0.81	+0.2
1,197,415	-		CCNA_01090	0.82	+0.2
1,197,510	-		CCNA_01090	0.89	+1.2
1,197,537	+				+1.0
1,197,618	+				-0.2
1,197,636	+				-0.8
1,197,644	-				-2.3
1,197,649	-				+1.6
1,197,696	+				+1.0
1,197,711	+				-1.8
1,197,711	+				-0.6
1,197,715	+				+1.0
1,197,719	-				-0.6
1,197,742	+				-0.6
1,197,742	+				-0.2
1,197,742	+				-0.4
1,197,742	+				+0.2
1,197,750	-				-1.1
1,197,750	-				+0.7
1,197,750	-				-0.9
1,197,750	-				+2.6
1,197,750	-				-0.9
1,197,750	-				+0.2
1,197,751	+				+2.6
1,197,752	+				-0.8
1,197,759	-				+0.3
1,197,771	+				+0.6
1,197,801	-		CCNA_01091	0.11	+1.0
1,197,824	-		CCNA_01091	0.15	-0.0
1,197,845	+		CCNA_01091	0.19	-0.8
1,197,845	+		CCNA_01091	0.19	-0.4
1,197,884	+		CCNA_01091	0.25	+0.2
1,197,967	+		CCNA_01091	0.39	+1.0
1,198,022	+		CCNA_01091	0.49	+0.1
1,198,022	+		CCNA_01091	0.49	+0.2
1,198,030	-		CCNA_01091	0.50	-1.8
1,198,030	-		CCNA_01091	0.50	-1.9
1,198,030	-		CCNA_01091	0.50	-0.6
1,198,030	-		CCNA_01091	0.50	+1.6
1,198,035	-		CCNA_01091	0.51	-1.1
1,198,067	+		CCNA_01091	0.56	-0.0
1,198,067	+		CCNA_01091	0.56	-0.2
1,198,067	+		CCNA_01091	0.56	+1.6
1,198,067	+		CCNA_01091	0.56	-0.7
1,198,067	+		CCNA_01091	0.56	+1.6
1,198,075	-		CCNA_01091	0.58	-0.4
1,198,075	-		CCNA_01091	0.58	-1.5
1,198,075	-		CCNA_01091	0.58	-1.4
1,198,087	+		CCNA_01091	0.60	-1.2
1,198,087	+		CCNA_01091	0.60	-1.0
1,198,087	+		CCNA_01091	0.60	-0.6
1,198,095	-		CCNA_01091	0.61	+0.2
1,198,095	-		CCNA_01091	0.61	+1.6
1,198,095	-		CCNA_01091	0.61	-0.0
1,198,095	-		CCNA_01091	0.61	-1.2
1,198,095	-		CCNA_01091	0.61	+1.0
1,198,095	-		CCNA_01091	0.61	+1.6
1,198,137	+		CCNA_01091	0.68	+1.2
1,198,168	+		CCNA_01091	0.73	-1.7
1,198,168	+		CCNA_01091	0.73	-1.5
1,198,168	+				+0.6
1,198,258	+		CCNA_01091	0.88	-1.4
1,198,263	+		CCNA_01091	0.89	+0.2
1,198,278	+				-0.8
1,198,278	+				-3.4
1,198,278	+				-1.7
1,198,278	+				-0.5
1,198,283	+				-1.3
1,198,286	-				-1.1
1,198,286	-				+1.2
1,198,286	-				-2.4
1,198,375	-				+0.4
1,198,419	-		CCNA_01092	0.13	-0.4
1,198,437	+		CCNA_01092	0.19	+0.6
1,198,437	+		CCNA_01092	0.19	-1.1
1,198,462	-		CCNA_01092	0.27	+0.9
1,198,519	+		CCNA_01092	0.46	-0.4
1,198,556	-		CCNA_01092	0.58	+0.2
1,198,563	+		CCNA_01092	0.61	-0.0
1,198,565	+		CCNA_01092	0.61	+0.2
1,198,573	+		CCNA_01092	0.64	+0.2
1,198,583	+		CCNA_01092	0.67	+1.0
1,198,585	+		CCNA_01092	0.68	-1.5
1,198,604	-		CCNA_01092	0.74	-1.3
1,198,651	+				-2.1
1,198,651	+				+0.8
1,198,651	+				+1.0
1,198,651	+				+0.2
1,198,651	+				-0.0
1,198,651	+				-0.2
1,198,659	-				-0.0
1,198,659	-				+0.4
1,198,659	-				+0.2
1,198,659	-				-0.0
1,198,659	-				+0.7
1,198,817	+		CCNA_01093	0.51	+1.6
1,198,840	+		CCNA_01093	0.59	-0.0
1,198,848	-		CCNA_01093	0.61	+0.3
1,198,869	+		CCNA_01093	0.68	-1.1
1,198,887	-		CCNA_01093	0.74	-0.2
1,198,938	-				+0.2
1,198,948	+				+1.6
1,198,956	-				+2.0
1,198,965	+				+1.0
1,198,979	-				-0.3
1,198,979	-				-0.4
1,198,988	+				-0.0
1,198,988	+				-1.4
1,198,996	-				+1.8
1,198,996	-				-0.9
1,198,998	+				+1.0
1,199,028	+				-0.2
1,199,041	-				+4.2
1,199,041	-				+3.7
1,199,115	-		CCNA_01094	0.17	+3.9
1,199,150	-		CCNA_01094	0.41	+3.9
1,199,160	-		CCNA_01094	0.47	+4.1
1,199,189	+		CCNA_01094	0.67	-0.7
1,199,229	-				+2.9
1,199,266	+				-1.1
1,199,266	+				-0.6
1,199,266	+				+2.2
1,199,266	+				+0.3
1,199,272	+				+2.6
1,199,274	-				+3.5
1,199,274	-				+2.7
1,199,274	-				+2.7
1,199,274	-				+2.1
1,199,274	-				+2.1
1,199,294	+				-0.7
1,199,302	-				+2.6