Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01087

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,192,316	-		CCNA_01086	0.56	+2.0
1,192,339	+		CCNA_01086	0.57	+0.6
1,192,375	-		CCNA_01086	0.59	+2.8
1,192,382	-		CCNA_01086	0.60	+3.7
1,192,423	-		CCNA_01086	0.62	+3.1
1,192,425	+		CCNA_01086	0.62	+0.4
1,192,433	-		CCNA_01086	0.62	+1.4
1,192,452	-		CCNA_01086	0.63	+2.2
1,192,552	-		CCNA_01086	0.69	+2.7
1,192,553	-		CCNA_01086	0.69	+2.7
1,192,595	+		CCNA_01086	0.71	+0.8
1,192,599	+		CCNA_01086	0.72	+0.6
1,192,600	+		CCNA_01086	0.72	+1.9
1,192,603	-		CCNA_01086	0.72	+2.9
1,192,603	-		CCNA_01086	0.72	+2.7
1,192,608	-		CCNA_01086	0.72	+2.4
1,192,611	+		CCNA_01086	0.72	-0.0
1,192,637	+		CCNA_01086	0.74	-0.0
1,192,701	+		CCNA_01086	0.77	+1.6
1,192,704	-		CCNA_01086	0.77	+2.6
1,192,709	-		CCNA_01086	0.78	+2.9
1,192,733	+		CCNA_01086	0.79	+0.2
1,192,771	-		CCNA_01086	0.81	+3.2
1,192,771	-		CCNA_01086	0.81	+1.9
1,192,796	+		CCNA_01086	0.82	+2.6
1,192,866	-		CCNA_01086	0.86	+4.1
1,192,866	-		CCNA_01086	0.86	+2.5
1,192,882	+		CCNA_01086	0.87	+0.6
1,192,933	+				+0.2
1,192,941	-				+1.3
1,192,981	-				+0.1
1,193,010	-				+1.6
1,193,069	-				+1.6
1,193,133	-				+1.6
1,193,160	+				+1.0
1,193,165	+				-0.2
1,193,190	-				+1.6
1,193,255	+				-0.4
1,193,273	+				-1.1
1,193,281	-				+1.2
1,193,281	-				-1.2
1,193,289	+				+0.4
1,193,299	+				-0.7
1,193,304	-				+0.6
1,193,310	+				-0.6
1,193,315	+				-1.0
1,193,322	-				+1.0
1,193,347	-				-0.8
1,193,353	+		CCNA_01087	0.11	+1.6
1,193,361	+		CCNA_01087	0.12	-0.8
1,193,398	+		CCNA_01087	0.17	-0.1
1,193,460	-		CCNA_01087	0.26	+0.7
1,193,478	+		CCNA_01087	0.28	+1.0
1,193,490	+		CCNA_01087	0.30	+0.1
1,193,490	+		CCNA_01087	0.30	-0.1
1,193,490	+		CCNA_01087	0.30	-0.7
1,193,490	+		CCNA_01087	0.30	+0.3
1,193,495	+		CCNA_01087	0.31	+1.7
1,193,498	-		CCNA_01087	0.31	-3.4
1,193,506	+		CCNA_01087	0.32	+0.6
1,193,506	+		CCNA_01087	0.32	+0.3
1,193,507	+		CCNA_01087	0.32	+1.2
1,193,507	+		CCNA_01087	0.32	+1.4
1,193,507	+		CCNA_01087	0.32	+3.4
1,193,515	-		CCNA_01087	0.33	-0.4
1,193,515	-		CCNA_01087	0.33	+2.6
1,193,536	-		CCNA_01087	0.36	-0.7
1,193,599	+		CCNA_01087	0.45	+0.3
1,193,605	-		CCNA_01087	0.46	+0.0
1,193,611	+		CCNA_01087	0.47	-1.6
1,193,612	+		CCNA_01087	0.47	+0.5
1,193,646	+		CCNA_01087	0.52	+0.5
1,193,646	+		CCNA_01087	0.52	+2.0
1,193,666	+		CCNA_01087	0.54	+0.2
1,193,674	-		CCNA_01087	0.56	-0.8
1,193,684	+		CCNA_01087	0.57	-1.0
1,193,689	+		CCNA_01087	0.58	+1.2
1,193,692	-		CCNA_01087	0.58	+0.6
1,193,694	+		CCNA_01087	0.58	+2.5
1,193,712	+		CCNA_01087	0.61	+2.2
1,193,720	-		CCNA_01087	0.62	-1.3
1,193,720	-		CCNA_01087	0.62	-0.4
1,193,752	-		CCNA_01087	0.66	-1.4
1,193,753	-		CCNA_01087	0.67	+0.6
1,193,773	+		CCNA_01087	0.69	+1.8
1,193,775	+		CCNA_01087	0.70	+2.1
1,193,775	+		CCNA_01087	0.70	+0.7
1,193,793	-		CCNA_01087	0.72	-2.2
1,193,832	-		CCNA_01087	0.78	+0.8
1,193,903	+		CCNA_01087	0.87	+2.2
1,193,903	+		CCNA_01087	0.87	+2.1
1,193,906	-		CCNA_01087	0.88	-0.6
1,193,906	-		CCNA_01087	0.88	-0.9
1,193,926	-				+0.6
1,193,994	-				+0.2
1,193,994	-				-0.2
1,193,996	-				-0.3
1,194,007	+				+2.6
1,194,015	-				-0.8
1,194,017	+				+1.6
1,194,017	+				+2.2
1,194,018	+				-0.1
1,194,024	-				-1.0
1,194,034	-				-0.6
1,194,039	-				+1.0
1,194,089	+		CCNA_01088	0.12	-0.6
1,194,099	+		CCNA_01088	0.13	-2.1
1,194,100	-		CCNA_01088	0.14	+0.9
1,194,112	-		CCNA_01088	0.16	-1.3
1,194,144	+		CCNA_01088	0.22	-0.6
1,194,152	-		CCNA_01088	0.23	+0.3
1,194,152	-		CCNA_01088	0.23	+1.7
1,194,170	+		CCNA_01088	0.27	-0.4
1,194,178	-		CCNA_01088	0.28	+0.7
1,194,178	-		CCNA_01088	0.28	+1.4
1,194,178	-		CCNA_01088	0.28	+0.2
1,194,178	-		CCNA_01088	0.28	+0.7
1,194,312	-		CCNA_01088	0.54	+0.3
1,194,318	-		CCNA_01088	0.55	+0.8
1,194,330	+		CCNA_01088	0.57	-0.8
1,194,378	+		CCNA_01088	0.66	-0.4
1,194,381	-		CCNA_01088	0.67	+0.7
1,194,464	+		CCNA_01088	0.83	-0.5
1,194,468	+		CCNA_01088	0.83	+1.0
1,194,487	-		CCNA_01088	0.87	-0.4
1,194,524	-				+0.2
1,194,610	+				-1.1
1,194,634	+				-0.8
1,194,673	+				+1.6
1,194,724	+				+0.1
1,194,725	-				-2.9
1,194,740	-				+0.6
1,194,750	+				+1.6
1,194,760	+				+0.6
1,194,760	+				-1.9
1,194,768	-				-1.8
1,194,770	+				-0.7
1,194,770	+				-0.0
1,194,776	+		CCNA_01089	0.10	-0.2
1,194,776	+		CCNA_01089	0.10	-0.2
1,194,784	-		CCNA_01089	0.11	-1.2
1,194,800	-		CCNA_01089	0.12	+0.2
1,194,823	-		CCNA_01089	0.13	-1.5
1,194,854	+		CCNA_01089	0.15	-0.9
1,194,931	+		CCNA_01089	0.19	+0.2
1,194,945	-		CCNA_01089	0.20	+1.4
1,194,982	+		CCNA_01089	0.22	+1.0
1,194,989	+		CCNA_01089	0.23	-0.6
1,194,989	+		CCNA_01089	0.23	+0.2