Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01067

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,170,169	-		CCNA_01066	0.11	+1.9
1,170,170	-		CCNA_01066	0.11	-0.3
1,170,181	+		CCNA_01066	0.12	+1.8
1,170,181	+		CCNA_01066	0.12	+2.5
1,170,181	+		CCNA_01066	0.12	+2.1
1,170,181	+		CCNA_01066	0.12	+2.0
1,170,183	-		CCNA_01066	0.12	-1.5
1,170,188	+		CCNA_01066	0.13	+2.7
1,170,193	-		CCNA_01066	0.13	+0.4
1,170,259	-		CCNA_01066	0.19	+1.8
1,170,340	+		CCNA_01066	0.27	+2.4
1,170,341	+		CCNA_01066	0.27	+1.8
1,170,341	+		CCNA_01066	0.27	+0.6
1,170,349	-		CCNA_01066	0.28	-0.5
1,170,349	-		CCNA_01066	0.28	-0.8
1,170,349	-		CCNA_01066	0.28	-1.6
1,170,351	+		CCNA_01066	0.28	+2.5
1,170,351	+		CCNA_01066	0.28	+3.3
1,170,359	-		CCNA_01066	0.29	-0.7
1,170,361	+		CCNA_01066	0.29	+1.7
1,170,361	+		CCNA_01066	0.29	+2.5
1,170,361	+		CCNA_01066	0.29	+2.8
1,170,369	-		CCNA_01066	0.30	-0.1
1,170,369	-		CCNA_01066	0.30	+1.8
1,170,390	+		CCNA_01066	0.32	+2.7
1,170,395	-		CCNA_01066	0.32	+2.5
1,170,421	+		CCNA_01066	0.35	+2.5
1,170,422	-		CCNA_01066	0.35	-0.2
1,170,475	+		CCNA_01066	0.40	+2.2
1,170,483	-		CCNA_01066	0.41	+0.2
1,170,483	-		CCNA_01066	0.41	-0.3
1,170,483	-		CCNA_01066	0.41	-1.5
1,170,495	+		CCNA_01066	0.42	+3.4
1,170,517	-		CCNA_01066	0.44	-2.4
1,170,602	-		CCNA_01066	0.52	+2.2
1,170,618	+		CCNA_01066	0.54	+1.8
1,170,618	-		CCNA_01066	0.54	+0.2
1,170,631	+		CCNA_01066	0.55	+2.0
1,170,631	+		CCNA_01066	0.55	+1.0
1,170,690	+		CCNA_01066	0.61	+2.2
1,170,690	+		CCNA_01066	0.61	+2.0
1,170,690	+		CCNA_01066	0.61	+2.2
1,170,690	+		CCNA_01066	0.61	+3.1
1,170,690	+		CCNA_01066	0.61	+2.9
1,170,692	-		CCNA_01066	0.61	-0.6
1,170,693	-		CCNA_01066	0.61	-0.5
1,170,698	-		CCNA_01066	0.62	-0.6
1,170,708	+		CCNA_01066	0.63	+2.0
1,170,732	-		CCNA_01066	0.65	-0.8
1,170,761	+		CCNA_01066	0.68	+2.9
1,170,769	-		CCNA_01066	0.68	-1.6
1,170,786	-		CCNA_01066	0.70	+0.2
1,170,802	+		CCNA_01066	0.72	+2.7
1,170,802	+		CCNA_01066	0.72	+2.7
1,170,802	+		CCNA_01066	0.72	+2.5
1,170,810	-		CCNA_01066	0.72	+0.0
1,170,812	+		CCNA_01066	0.73	+3.3
1,170,815	-		CCNA_01066	0.73	-1.1
1,170,839	+		CCNA_01066	0.75	+2.4
1,170,839	+		CCNA_01066	0.75	+2.7
1,170,839	+		CCNA_01066	0.75	+1.9
1,170,839	+		CCNA_01066	0.75	+4.5
1,170,839	+		CCNA_01066	0.75	+2.1
1,170,847	-		CCNA_01066	0.76	+1.9
1,170,874	+		CCNA_01066	0.79	+2.3
1,170,912	+		CCNA_01066	0.82	+2.6
1,170,920	-		CCNA_01066	0.83	-0.6
1,170,920	-		CCNA_01066	0.83	-0.5
1,170,926	+		CCNA_01066	0.84	+2.2
1,170,958	+		CCNA_01066	0.87	+2.1
1,170,958	+		CCNA_01066	0.87	+2.5
1,170,996	+				+2.1
1,171,037	+				+2.0
1,171,108	+				+1.7
1,171,121	+				+2.0
1,171,121	+				+1.0
1,171,131	+				+0.5
1,171,143	+				+1.0
1,171,197	+				+1.4
1,171,210	-				+1.5
1,171,233	+				+0.9
1,171,233	+				+0.4
1,171,233	+				-2.0
1,171,244	+				-0.1
1,171,245	+				+2.2
1,171,286	-				+1.5
1,171,296	+				+0.4
1,171,335	+		CCNA_01067	0.12	+1.4
1,171,336	+		CCNA_01067	0.12	+0.8
1,171,341	+		CCNA_01067	0.12	+0.9
1,171,349	-		CCNA_01067	0.12	+0.9
1,171,391	+		CCNA_01067	0.15	+1.7
1,171,391	+		CCNA_01067	0.15	+2.0
1,171,391	+		CCNA_01067	0.15	+0.7
1,171,391	+		CCNA_01067	0.15	+0.5
1,171,399	-		CCNA_01067	0.16	-0.5
1,171,403	+		CCNA_01067	0.16	+0.5
1,171,403	+		CCNA_01067	0.16	+2.5
1,171,411	-		CCNA_01067	0.16	+1.2
1,171,458	-		CCNA_01067	0.19	+0.9
1,171,462	+		CCNA_01067	0.20	+2.3
1,171,470	-		CCNA_01067	0.20	+0.5
1,171,526	+		CCNA_01067	0.24	+0.9
1,171,526	+		CCNA_01067	0.24	+0.9
1,171,526	+		CCNA_01067	0.24	+0.6
1,171,526	+		CCNA_01067	0.24	+0.5
1,171,526	+		CCNA_01067	0.24	+3.2
1,171,526	+		CCNA_01067	0.24	+2.4
1,171,526	+		CCNA_01067	0.24	+1.7
1,171,526	+		CCNA_01067	0.24	-0.3
1,171,526	+		CCNA_01067	0.24	+2.5
1,171,534	-		CCNA_01067	0.24	+0.5
1,171,534	-		CCNA_01067	0.24	+1.5
1,171,534	-		CCNA_01067	0.24	-0.1
1,171,534	-		CCNA_01067	0.24	+0.9
1,171,534	-		CCNA_01067	0.24	+2.5
1,171,539	+		CCNA_01067	0.24	+1.3
1,171,561	+		CCNA_01067	0.26	+1.5
1,171,569	+		CCNA_01067	0.26	+1.1
1,171,602	-		CCNA_01067	0.28	+0.5
1,171,615	+		CCNA_01067	0.29	+2.5
1,171,632	+		CCNA_01067	0.30	-2.3
1,171,680	+		CCNA_01067	0.33	+1.5
1,171,680	+		CCNA_01067	0.33	+2.3
1,171,685	+		CCNA_01067	0.34	+0.7
1,171,704	+		CCNA_01067	0.35	+1.8
1,171,719	+		CCNA_01067	0.36	+1.9
1,171,724	+		CCNA_01067	0.36	-0.0
1,171,724	+		CCNA_01067	0.36	-0.0
1,171,727	-		CCNA_01067	0.36	+0.9
1,171,750	+		CCNA_01067	0.38	+0.7
1,171,750	+		CCNA_01067	0.38	+1.0
1,171,753	-		CCNA_01067	0.38	-0.3
1,171,758	-		CCNA_01067	0.38	+1.5
1,171,806	+		CCNA_01067	0.41	+1.5
1,171,831	+		CCNA_01067	0.43	+1.1
1,171,862	+		CCNA_01067	0.45	+2.2
1,171,862	+		CCNA_01067	0.45	+2.1
1,171,862	+		CCNA_01067	0.45	+2.4
1,171,862	+		CCNA_01067	0.45	+2.9
1,172,004	+		CCNA_01067	0.54	+0.7
1,172,008	+		CCNA_01067	0.54	+2.4
1,172,079	+		CCNA_01067	0.59	+3.5
1,172,096	+		CCNA_01067	0.60	+0.5
1,172,185	+		CCNA_01067	0.65	+0.7
1,172,190	+		CCNA_01067	0.66	+2.8
1,172,190	+		CCNA_01067	0.66	+0.9
1,172,190	+		CCNA_01067	0.66	+0.7
1,172,248	+		CCNA_01067	0.69	+2.5
1,172,248	+		CCNA_01067	0.69	+1.5
1,172,284	+		CCNA_01067	0.71	+0.8
1,172,284	+		CCNA_01067	0.71	+0.5
1,172,406	+		CCNA_01067	0.79	-0.2
1,172,429	+		CCNA_01067	0.81	+0.4
1,172,437	+		CCNA_01067	0.81	+1.6
1,172,492	+		CCNA_01067	0.85	+1.7
1,172,502	+		CCNA_01067	0.85	+1.3
1,172,502	+		CCNA_01067	0.85	+1.6
1,172,529	+		CCNA_01067	0.87	+2.0
1,172,591	+				+1.3
1,172,597	+				+1.4
1,172,638	+				+2.6
1,172,638	+				+3.9
1,172,646	-				-0.4
1,172,711	+				+2.4
1,172,711	+				+2.1
1,172,719	-				-0.6
1,172,719	-				-2.2
1,172,720	-				+0.7
1,172,739	-				-2.1
1,172,770	+				+1.1
1,172,770	+				+1.9
1,172,770	+				+1.8
1,172,778	-				-0.3
1,172,794	+				+1.8
1,172,815	+				+1.8
1,172,839	+				+0.2
1,172,839	+				-1.0
1,172,845	-				-1.1
1,172,847	-				-0.1
1,172,897	+				+2.6
1,172,907	+				+2.7
1,172,925	+				+1.9
1,172,932	+				+1.4
1,172,972	+		CCNA_01068	0.10	+1.2
1,172,985	+		CCNA_01068	0.11	+0.9
1,172,990	+		CCNA_01068	0.12	+1.1
1,172,990	+		CCNA_01068	0.12	+1.2
1,172,990	+		CCNA_01068	0.12	-0.1
1,172,990	+		CCNA_01068	0.12	-0.3
1,172,990	+		CCNA_01068	0.12	+1.8
1,172,990	+		CCNA_01068	0.12	-0.1
1,172,998	-		CCNA_01068	0.12	+0.9
1,172,998	-		CCNA_01068	0.12	+0.5
1,172,998	-		CCNA_01068	0.12	-0.3
1,172,998	-		CCNA_01068	0.12	+0.7
1,173,009	-		CCNA_01068	0.13	+2.7
1,173,034	-		CCNA_01068	0.15	+0.8
1,173,046	-		CCNA_01068	0.16	+0.1
1,173,090	+		CCNA_01068	0.19	+1.3
1,173,127	-		CCNA_01068	0.22	+2.5
1,173,153	-		CCNA_01068	0.24	+1.7
1,173,166	+		CCNA_01068	0.25	-0.0
1,173,167	+		CCNA_01068	0.25	+2.7
1,173,177	+		CCNA_01068	0.26	+0.4
1,173,180	-		CCNA_01068	0.26	+2.5
1,173,184	+		CCNA_01068	0.27	+0.4
1,173,184	-		CCNA_01068	0.27	-0.6
1,173,186	-		CCNA_01068	0.27	-0.4
1,173,212	-		CCNA_01068	0.29	+1.5
1,173,214	-		CCNA_01068	0.29	+0.8
1,173,217	+		CCNA_01068	0.29	-0.2
1,173,217	+		CCNA_01068	0.29	+0.4
1,173,217	+		CCNA_01068	0.29	-0.3
1,173,217	+		CCNA_01068	0.29	+1.3
1,173,222	+		CCNA_01068	0.30	-0.1
1,173,222	+		CCNA_01068	0.30	+0.4
1,173,225	-		CCNA_01068	0.30	-0.4
1,173,225	-		CCNA_01068	0.30	+1.7
1,173,230	-		CCNA_01068	0.30	+1.2
1,173,230	-		CCNA_01068	0.30	+2.3
1,173,230	-		CCNA_01068	0.30	+0.5
1,173,283	-		CCNA_01068	0.34	+0.5
1,173,297	+		CCNA_01068	0.35	+2.5
1,173,298	-		CCNA_01068	0.35	-0.1
1,173,304	+		CCNA_01068	0.36	+2.5
1,173,304	+		CCNA_01068	0.36	+0.4
1,173,304	+		CCNA_01068	0.36	-0.2
1,173,304	+		CCNA_01068	0.36	+0.2
1,173,312	-		CCNA_01068	0.37	+1.5
1,173,312	-		CCNA_01068	0.37	+1.4
1,173,338	+		CCNA_01068	0.39	+1.7
1,173,362	-		CCNA_01068	0.40	-0.1
1,173,379	-		CCNA_01068	0.42	-2.1
1,173,394	-		CCNA_01068	0.43	-1.5
1,173,408	-		CCNA_01068	0.44	+0.1
1,173,415	+		CCNA_01068	0.44	+0.2
1,173,415	+		CCNA_01068	0.44	+1.5
1,173,423	-		CCNA_01068	0.45	+3.4
1,173,433	-		CCNA_01068	0.46	+1.5
1,173,441	-		CCNA_01068	0.47	+0.6
1,173,464	+		CCNA_01068	0.48	-1.2
1,173,497	+		CCNA_01068	0.51	-0.8
1,173,505	-		CCNA_01068	0.51	+0.0
1,173,505	-		CCNA_01068	0.51	+1.0
1,173,505	-		CCNA_01068	0.51	+0.5
1,173,505	-		CCNA_01068	0.51	+0.7
1,173,523	+		CCNA_01068	0.53	+1.1
1,173,530	+		CCNA_01068	0.53	-1.9
1,173,530	+		CCNA_01068	0.53	+0.5
1,173,530	+		CCNA_01068	0.53	-0.3
1,173,530	+		CCNA_01068	0.53	-0.7
1,173,530	+		CCNA_01068	0.53	-0.7
1,173,538	-		CCNA_01068	0.54	-0.3
1,173,538	-		CCNA_01068	0.54	-1.0
1,173,583	-		CCNA_01068	0.58	+1.8
1,173,584	-		CCNA_01068	0.58	+2.3
1,173,585	+		CCNA_01068	0.58	+1.4
1,173,586	+		CCNA_01068	0.58	-0.8
1,173,586	+		CCNA_01068	0.58	+1.2
1,173,593	-		CCNA_01068	0.58	+0.5
1,173,594	-		CCNA_01068	0.58	+0.3
1,173,594	-		CCNA_01068	0.58	-1.5
1,173,594	-		CCNA_01068	0.58	-1.3
1,173,594	-		CCNA_01068	0.58	+0.8
1,173,594	-		CCNA_01068	0.58	+0.2
1,173,646	+		CCNA_01068	0.62	+0.7
1,173,677	+		CCNA_01068	0.65	+0.5
1,173,727	-		CCNA_01068	0.69	+0.3
1,173,727	-		CCNA_01068	0.69	-0.6