Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01057

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,156,581	+		CCNA_01056	0.32	-0.1
1,156,634	+		CCNA_01056	0.36	+0.4
1,156,735	+		CCNA_01056	0.44	-0.6
1,156,735	+		CCNA_01056	0.44	+0.7
1,156,735	+		CCNA_01056	0.44	-2.2
1,156,743	-		CCNA_01056	0.45	+1.2
1,156,792	-		CCNA_01056	0.48	+0.5
1,156,797	+		CCNA_01056	0.49	+0.8
1,156,805	-		CCNA_01056	0.49	+0.9
1,156,830	+		CCNA_01056	0.51	-1.4
1,156,858	-		CCNA_01056	0.53	+3.0
1,156,872	-		CCNA_01056	0.55	+2.0
1,156,881	-		CCNA_01056	0.55	+2.0
1,156,971	-		CCNA_01056	0.62	+2.5
1,156,983	-		CCNA_01056	0.63	+1.5
1,157,012	-		CCNA_01056	0.65	+2.3
1,157,085	-		CCNA_01056	0.71	+2.3
1,157,096	+		CCNA_01056	0.72	+1.1
1,157,126	+		CCNA_01056	0.74	-0.5
1,157,134	-		CCNA_01056	0.75	+2.1
1,157,134	-		CCNA_01056	0.75	+1.9
1,157,134	-		CCNA_01056	0.75	+1.9
1,157,178	-		CCNA_01056	0.78	+2.5
1,157,178	-		CCNA_01056	0.78	+1.3
1,157,205	-		CCNA_01056	0.80	+2.4
1,157,216	+		CCNA_01056	0.81	+0.2
1,157,234	-		CCNA_01056	0.82	+2.3
1,157,234	-		CCNA_01056	0.82	+2.2
1,157,252	-		CCNA_01056	0.84	+1.7
1,157,253	-		CCNA_01056	0.84	+1.4
1,157,263	-		CCNA_01056	0.84	+1.8
1,157,263	-		CCNA_01056	0.84	+1.0
1,157,294	+		CCNA_01056	0.87	+0.4
1,157,354	-				+1.7
1,157,354	-				+2.9
1,157,375	+				+2.1
1,157,393	-				+3.2
1,157,404	-				+2.9
1,157,459	+				+0.5
1,157,518	+				-1.2
1,157,534	-				+3.1
1,157,549	+				+0.2
1,157,557	-				+3.1
1,157,644	-				+1.8
1,157,695	+				-0.3
1,157,695	-				+2.2
1,157,755	+		CCNA_01057	0.14	+0.5
1,157,755	+		CCNA_01057	0.14	+0.9
1,157,801	+		CCNA_01057	0.17	-0.5
1,157,832	-		CCNA_01057	0.19	+2.4
1,157,868	+		CCNA_01057	0.21	-0.8
1,157,908	-		CCNA_01057	0.24	+1.5
1,157,933	-		CCNA_01057	0.26	+1.7
1,157,950	-		CCNA_01057	0.27	-0.3
1,157,950	-		CCNA_01057	0.27	+2.2
1,157,950	-		CCNA_01057	0.27	+1.2
1,157,959	-		CCNA_01057	0.27	+2.5
1,158,007	-		CCNA_01057	0.30	+2.3
1,158,087	+		CCNA_01057	0.36	-0.2
1,158,087	+		CCNA_01057	0.36	+1.5
1,158,087	+		CCNA_01057	0.36	-0.6
1,158,087	+		CCNA_01057	0.36	+2.5
1,158,087	+		CCNA_01057	0.36	-1.1
1,158,095	-		CCNA_01057	0.36	+0.8
1,158,095	-		CCNA_01057	0.36	+2.5
1,158,095	-		CCNA_01057	0.36	+1.5
1,158,114	-		CCNA_01057	0.38	+2.5
1,158,131	-		CCNA_01057	0.39	+1.2
1,158,136	-		CCNA_01057	0.39	+2.9
1,158,162	+		CCNA_01057	0.41	+0.9
1,158,194	+		CCNA_01057	0.43	+2.5
1,158,206	-		CCNA_01057	0.44	+1.9
1,158,229	-		CCNA_01057	0.45	+5.3
1,158,229	-		CCNA_01057	0.45	+3.4
1,158,229	-		CCNA_01057	0.45	+2.0
1,158,238	-		CCNA_01057	0.46	+2.7
1,158,268	-		CCNA_01057	0.48	+2.3
1,158,385	+		CCNA_01057	0.56	-1.3
1,158,393	-		CCNA_01057	0.56	+2.1
1,158,513	+		CCNA_01057	0.64	+1.5
1,158,521	-		CCNA_01057	0.65	+1.6
1,158,568	+		CCNA_01057	0.68	+0.9
1,158,581	-		CCNA_01057	0.69	+1.3
1,158,604	+		CCNA_01057	0.70	+2.5
1,158,612	-		CCNA_01057	0.71	+0.9
1,158,612	-		CCNA_01057	0.71	+1.1
1,158,612	-		CCNA_01057	0.71	+1.3
1,158,646	-		CCNA_01057	0.73	+1.2
1,158,646	-		CCNA_01057	0.73	+1.0
1,158,661	-		CCNA_01057	0.74	+2.4
1,158,673	-		CCNA_01057	0.75	+3.6
1,158,673	-		CCNA_01057	0.75	+3.6
1,158,743	+		CCNA_01057	0.80	-0.1
1,158,765	+		CCNA_01057	0.81	-0.8
1,158,773	-		CCNA_01057	0.82	+4.0
1,158,773	-		CCNA_01057	0.82	+3.9
1,158,786	+		CCNA_01057	0.82	+0.2
1,158,889	-		CCNA_01057	0.89	-0.5
1,158,911	+				+0.9
1,158,977	-				-1.2
1,159,036	-				-1.6
1,159,059	-				+1.6
1,159,069	-				+1.4
1,159,070	-				+0.4
1,159,218	-		CCNA_01058	0.29	+3.9
1,159,219	-		CCNA_01058	0.30	+4.1
1,159,264	-		CCNA_01058	0.45	+3.7
1,159,342	-		CCNA_01058	0.71	+3.5
1,159,393	-		CCNA_01058	0.88	+4.1
1,159,429	+				-0.8
1,159,437	-				+2.2
1,159,437	-				+2.0
1,159,462	-				+3.1
1,159,490	+				-2.7
1,159,514	-				+1.6
1,159,525	+				-0.8
1,159,535	-				-0.3
1,159,616	+				+4.8
1,159,653	+				+3.7
1,159,713	+				+4.6
1,159,713	+				+3.7
1,159,713	+				+4.0
1,159,713	+				+3.8
1,159,723	+				+4.0
1,159,723	+				+4.0
1,159,723	+				+3.8
1,159,733	+				+3.8
1,159,740	+				+4.1
1,159,823	+				+4.6
1,159,833	+				+4.7
1,159,841	+				+4.8
1,159,841	+				+4.4
1,159,841	+				+4.3
1,159,841	+				+4.5
1,159,867	+				+4.5