Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01052

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,150,596	+		CCNA_01051	0.72	+2.5
1,150,759	+		CCNA_01051	0.77	+0.2
1,150,766	-		CCNA_01051	0.78	-0.3
1,150,767	-		CCNA_01051	0.78	-1.2
1,150,785	+		CCNA_01051	0.78	-0.1
1,150,785	+		CCNA_01051	0.78	+0.9
1,150,788	-		CCNA_01051	0.78	+0.2
1,150,788	-		CCNA_01051	0.78	-1.2
1,150,793	-		CCNA_01051	0.78	-1.9
1,150,793	-		CCNA_01051	0.78	-1.3
1,150,800	+		CCNA_01051	0.79	-1.8
1,150,808	-		CCNA_01051	0.79	-0.1
1,150,818	-		CCNA_01051	0.79	-2.4
1,150,864	-		CCNA_01051	0.81	-1.0
1,150,867	+		CCNA_01051	0.81	-1.6
1,150,867	+		CCNA_01051	0.81	-0.3
1,150,867	+		CCNA_01051	0.81	+0.2
1,150,867	+		CCNA_01051	0.81	-0.7
1,150,867	+		CCNA_01051	0.81	-0.1
1,150,869	-		CCNA_01051	0.81	-0.5
1,150,875	-		CCNA_01051	0.81	+0.5
1,150,875	-		CCNA_01051	0.81	-1.9
1,150,875	-		CCNA_01051	0.81	-2.3
1,150,875	-		CCNA_01051	0.81	-2.2
1,150,881	-		CCNA_01051	0.81	-0.8
1,150,924	-		CCNA_01051	0.83	+0.9
1,150,966	-		CCNA_01051	0.84	-0.7
1,151,079	+		CCNA_01051	0.88	-0.3
1,151,110	-		CCNA_01051	0.89	+2.5
1,151,127	+		CCNA_01051	0.89	-0.1
1,151,149	-		CCNA_01051	0.90	-0.8
1,151,159	+				+0.1
1,151,159	+				-0.1
1,151,182	-				-1.5
1,151,183	-				+0.9
1,151,191	+				-0.1
1,151,199	-				-0.5
1,151,221	-				-0.7
1,151,272	+				+0.7
1,151,272	+				-1.3
1,151,272	+				+0.3
1,151,272	+				-2.1
1,151,272	+				+1.5
1,151,272	+				-0.5
1,151,280	-				-0.7
1,151,280	-				-0.5
1,151,280	-				+0.9
1,151,280	-				-0.9
1,151,280	-				-1.7
1,151,280	-				-1.7
1,151,280	-				+1.5
1,151,285	-				-0.7
1,151,352	+				-0.1
1,151,352	+				-2.3
1,151,352	+				+1.1
1,151,360	-				+0.5
1,151,375	-				+0.5
1,151,375	-				+1.5
1,151,377	+				-1.1
1,151,420	+				+0.1
1,151,420	+				-0.3
1,151,548	-				+0.2
1,151,559	-				+2.5
1,151,559	-				+0.8
1,151,638	+		CCNA_01052	0.12	+2.5
1,151,638	+		CCNA_01052	0.12	-0.8
1,151,646	-		CCNA_01052	0.13	-2.5
1,151,700	-		CCNA_01052	0.20	+1.3
1,151,849	-		CCNA_01052	0.41	+0.9
1,151,921	-		CCNA_01052	0.51	+0.9
1,151,926	+		CCNA_01052	0.51	+2.5
1,151,926	+		CCNA_01052	0.51	-1.2
1,151,975	+		CCNA_01052	0.58	+0.9
1,151,975	+		CCNA_01052	0.58	-0.7
1,152,001	+		CCNA_01052	0.62	+2.5
1,152,003	-		CCNA_01052	0.62	+0.5
1,152,009	-		CCNA_01052	0.63	-2.5
1,152,040	-		CCNA_01052	0.67	-1.4
1,152,042	+		CCNA_01052	0.67	+1.5
1,152,042	+		CCNA_01052	0.67	-0.7
1,152,051	+		CCNA_01052	0.69	+0.2
1,152,068	-		CCNA_01052	0.71	-1.2
1,152,075	-		CCNA_01052	0.72	+1.2
1,152,095	+		CCNA_01052	0.75	-0.3
1,152,112	+		CCNA_01052	0.77	-1.8
1,152,185	-		CCNA_01052	0.87	-1.2
1,152,185	-		CCNA_01052	0.87	-0.5
1,152,219	+				-1.1
1,152,240	-				-1.1
1,152,265	+				-0.9
1,152,273	-				+0.2
1,152,335	+		CCNA_01053	0.12	+0.2
1,152,361	+		CCNA_01053	0.14	-0.2
1,152,361	+		CCNA_01053	0.14	-1.5
1,152,371	+		CCNA_01053	0.15	+0.9
1,152,371	+		CCNA_01053	0.15	-1.6
1,152,371	+		CCNA_01053	0.15	-1.5
1,152,391	-		CCNA_01053	0.17	+2.1
1,152,392	-		CCNA_01053	0.17	+0.2
1,152,419	-		CCNA_01053	0.20	+1.5
1,152,422	+		CCNA_01053	0.20	+2.5
1,152,430	-		CCNA_01053	0.21	+0.9
1,152,471	+		CCNA_01053	0.24	-1.5
1,152,479	-		CCNA_01053	0.25	-1.1
1,152,520	+		CCNA_01053	0.29	-1.9
1,152,533	-		CCNA_01053	0.30	+1.5
1,152,534	+		CCNA_01053	0.30	-2.6
1,152,542	+		CCNA_01053	0.31	-1.6
1,152,542	+		CCNA_01053	0.31	-0.1
1,152,550	-		CCNA_01053	0.32	-0.3
1,152,550	-		CCNA_01053	0.32	-2.7
1,152,584	+		CCNA_01053	0.35	-0.6
1,152,593	+		CCNA_01053	0.35	+0.5
1,152,601	-		CCNA_01053	0.36	-1.1
1,152,602	-		CCNA_01053	0.36	-1.7
1,152,691	+		CCNA_01053	0.44	+0.5
1,152,691	+		CCNA_01053	0.44	+0.9
1,152,699	-		CCNA_01053	0.45	+1.3
1,152,727	+		CCNA_01053	0.48	+0.2
1,152,770	-		CCNA_01053	0.51	+0.7
1,152,821	+		CCNA_01053	0.56	-1.6
1,152,829	-		CCNA_01053	0.57	-0.7
1,152,838	-		CCNA_01053	0.58	-0.1
1,152,845	+		CCNA_01053	0.58	-1.6
1,152,845	+		CCNA_01053	0.58	+1.3
1,152,845	+		CCNA_01053	0.58	-1.5
1,152,845	+		CCNA_01053	0.58	-1.1
1,152,845	+		CCNA_01053	0.58	-1.9
1,152,845	+		CCNA_01053	0.58	-0.5
1,152,845	+		CCNA_01053	0.58	-1.4
1,152,845	+		CCNA_01053	0.58	-1.6
1,152,845	+		CCNA_01053	0.58	+1.3
1,152,853	-		CCNA_01053	0.59	-1.1
1,152,853	-		CCNA_01053	0.59	+0.9
1,152,853	-		CCNA_01053	0.59	-0.8
1,152,853	-		CCNA_01053	0.59	-1.4
1,152,853	-		CCNA_01053	0.59	-1.6
1,152,853	-		CCNA_01053	0.59	+0.5
1,152,945	+		CCNA_01053	0.67	-0.8
1,152,945	+		CCNA_01053	0.67	-0.5
1,152,945	+		CCNA_01053	0.67	-0.1
1,152,945	+		CCNA_01053	0.67	-0.1
1,152,945	+		CCNA_01053	0.67	-2.8
1,152,950	+		CCNA_01053	0.68	-1.4
1,152,953	-		CCNA_01053	0.68	-0.5
1,152,953	-		CCNA_01053	0.68	+0.2
1,152,953	-		CCNA_01053	0.68	-0.3
1,152,953	-		CCNA_01053	0.68	+2.5
1,152,953	-		CCNA_01053	0.68	-1.9
1,152,963	-		CCNA_01053	0.69	-0.7
1,152,963	-		CCNA_01053	0.69	-0.9
1,152,970	+		CCNA_01053	0.69	+0.3
1,152,978	-		CCNA_01053	0.70	-1.9
1,153,034	-		CCNA_01053	0.75	-1.3
1,153,034	-		CCNA_01053	0.75	+0.3
1,153,036	+		CCNA_01053	0.75	+1.7
1,153,109	+		CCNA_01053	0.82	+1.5
1,153,124	-		CCNA_01053	0.83	+0.5
1,153,154	+		CCNA_01053	0.86	-0.9
1,153,168	+		CCNA_01053	0.87	-0.1
1,153,183	+		CCNA_01053	0.89	+0.3
1,153,190	-		CCNA_01053	0.89	+1.5
1,153,256	+				-0.4
1,153,269	-				-1.7