Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01040

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,133,948	+		CCNA_01039	0.25	-1.6
1,133,958	+		CCNA_01039	0.26	-0.2
1,133,965	+		CCNA_01039	0.26	+0.2
1,133,973	+		CCNA_01039	0.27	+0.1
1,133,991	-		CCNA_01039	0.28	-1.8
1,134,005	-		CCNA_01039	0.30	-1.5
1,134,023	+		CCNA_01039	0.31	+0.5
1,134,023	+		CCNA_01039	0.31	-0.4
1,134,023	+		CCNA_01039	0.31	-1.3
1,134,031	-		CCNA_01039	0.32	-0.0
1,134,031	-		CCNA_01039	0.32	-1.7
1,134,031	-		CCNA_01039	0.32	-0.4
1,134,057	+		CCNA_01039	0.33	-0.8
1,134,057	+		CCNA_01039	0.33	+1.3
1,134,103	+		CCNA_01039	0.37	+0.4
1,134,108	+		CCNA_01039	0.37	-1.0
1,134,108	+		CCNA_01039	0.37	-0.5
1,134,116	-		CCNA_01039	0.38	-0.2
1,134,116	-		CCNA_01039	0.38	-2.1
1,134,128	+		CCNA_01039	0.39	-0.9
1,134,136	-		CCNA_01039	0.39	+0.6
1,134,136	-		CCNA_01039	0.39	+1.6
1,134,138	+		CCNA_01039	0.40	-1.0
1,134,151	-		CCNA_01039	0.41	+2.6
1,134,151	-		CCNA_01039	0.41	+0.2
1,134,170	-		CCNA_01039	0.42	+1.0
1,134,186	+		CCNA_01039	0.43	+0.8
1,134,191	+		CCNA_01039	0.44	-0.2
1,134,191	+		CCNA_01039	0.44	+0.3
1,134,191	+		CCNA_01039	0.44	+1.0
1,134,191	+		CCNA_01039	0.44	-0.4
1,134,191	+		CCNA_01039	0.44	-0.2
1,134,199	-		CCNA_01039	0.44	+1.0
1,134,199	-		CCNA_01039	0.44	-0.2
1,134,199	-		CCNA_01039	0.44	-1.6
1,134,199	-		CCNA_01039	0.44	+1.0
1,134,199	-		CCNA_01039	0.44	+1.0
1,134,199	-		CCNA_01039	0.44	-1.1
1,134,204	-		CCNA_01039	0.45	-1.4
1,134,252	+		CCNA_01039	0.48	-2.0
1,134,294	+		CCNA_01039	0.51	-1.0
1,134,314	+		CCNA_01039	0.53	+0.1
1,134,322	-		CCNA_01039	0.54	-2.3
1,134,347	+		CCNA_01039	0.56	-0.3
1,134,347	+		CCNA_01039	0.56	+1.0
1,134,347	+		CCNA_01039	0.56	-1.1
1,134,347	+		CCNA_01039	0.56	+0.6
1,134,350	-		CCNA_01039	0.56	-0.0
1,134,355	-		CCNA_01039	0.56	+0.2
1,134,355	-		CCNA_01039	0.56	+1.6
1,134,355	-		CCNA_01039	0.56	+0.2
1,134,355	-		CCNA_01039	0.56	+2.6
1,134,355	-		CCNA_01039	0.56	-0.0
1,134,355	-		CCNA_01039	0.56	+1.6
1,134,355	-		CCNA_01039	0.56	+0.8
1,134,355	-		CCNA_01039	0.56	-0.4
1,134,355	-		CCNA_01039	0.56	+1.2
1,134,371	+		CCNA_01039	0.57	-0.0
1,134,381	+		CCNA_01039	0.58	-1.5
1,134,394	-		CCNA_01039	0.59	+1.6
1,134,405	-		CCNA_01039	0.60	-0.8
1,134,409	-		CCNA_01039	0.60	-0.2
1,134,423	-		CCNA_01039	0.61	-0.8
1,134,429	-		CCNA_01039	0.62	-0.8
1,134,439	+		CCNA_01039	0.62	-0.2
1,134,439	+		CCNA_01039	0.62	+0.8
1,134,439	+		CCNA_01039	0.62	+0.2
1,134,447	-		CCNA_01039	0.63	+2.6
1,134,447	-		CCNA_01039	0.63	-2.1
1,134,447	-		CCNA_01039	0.63	-2.3
1,134,447	-		CCNA_01039	0.63	-1.8
1,134,447	-		CCNA_01039	0.63	-0.6
1,134,447	-		CCNA_01039	0.63	-1.4
1,134,453	-		CCNA_01039	0.64	-1.0
1,134,492	+		CCNA_01039	0.67	-0.6
1,134,492	+		CCNA_01039	0.67	+1.6
1,134,544	+		CCNA_01039	0.70	-1.2
1,134,544	+		CCNA_01039	0.70	-1.4
1,134,544	+		CCNA_01039	0.70	-0.9
1,134,544	+		CCNA_01039	0.70	-1.0
1,134,552	-		CCNA_01039	0.71	-2.3
1,134,552	-		CCNA_01039	0.71	-1.1
1,134,552	-		CCNA_01039	0.71	+0.4
1,134,552	-		CCNA_01039	0.71	-0.8
1,134,552	-		CCNA_01039	0.71	+1.6
1,134,552	-		CCNA_01039	0.71	-2.3
1,134,554	+		CCNA_01039	0.71	-1.8
1,134,554	+		CCNA_01039	0.71	-0.8
1,134,573	+		CCNA_01039	0.73	-1.3
1,134,574	+		CCNA_01039	0.73	+0.6
1,134,574	+		CCNA_01039	0.73	-3.1
1,134,580	+		CCNA_01039	0.73	+0.6
1,134,580	+		CCNA_01039	0.73	+1.0
1,134,580	+		CCNA_01039	0.73	+1.0
1,134,591	+		CCNA_01039	0.74	-1.1
1,134,632	-		CCNA_01039	0.77	-0.9
1,134,653	+		CCNA_01039	0.79	-1.5
1,134,708	+		CCNA_01039	0.83	-0.0
1,134,709	+		CCNA_01039	0.83	-0.2
1,134,709	+		CCNA_01039	0.83	-2.5
1,134,709	+		CCNA_01039	0.83	-1.0
1,134,727	-		CCNA_01039	0.84	+0.6
1,134,780	-		CCNA_01039	0.88	-0.0
1,134,800	+		CCNA_01039	0.90	+0.2
1,134,821	+				+0.2
1,134,823	-				-0.8
1,134,826	+				+0.6
1,134,826	+				+2.0
1,134,826	+				-0.2
1,134,826	+				+1.6
1,134,834	-				-1.0
1,134,847	+				+0.2
1,134,857	+				-0.8
1,134,889	-				+0.4
1,134,914	+				-0.0
1,134,914	+				-1.3
1,134,938	+				-0.4
1,134,941	-				-0.0
1,134,946	-				+0.9
1,134,956	+				+1.6
1,134,967	+				-0.0
1,134,989	+				-0.5
1,135,036	+				+3.6
1,135,036	+				-2.2
1,135,036	+				+1.6
1,135,044	-				-1.1
1,135,044	-				+0.2
1,135,117	+		CCNA_01040	0.11	-0.4
1,135,151	+		CCNA_01040	0.14	-0.4
1,135,158	-		CCNA_01040	0.14	-0.0
1,135,159	-		CCNA_01040	0.14	-0.4
1,135,163	+		CCNA_01040	0.14	+0.6
1,135,171	-		CCNA_01040	0.15	-0.0
1,135,172	-		CCNA_01040	0.15	+0.8
1,135,185	+		CCNA_01040	0.16	+3.6
1,135,186	+		CCNA_01040	0.16	-0.9
1,135,249	-		CCNA_01040	0.20	+1.0
1,135,309	+		CCNA_01040	0.23	-0.6
1,135,316	-		CCNA_01040	0.24	-0.2
1,135,317	-		CCNA_01040	0.24	-1.4
1,135,322	+		CCNA_01040	0.24	-2.0
1,135,322	+		CCNA_01040	0.24	-1.2
1,135,322	+		CCNA_01040	0.24	+0.8
1,135,325	-		CCNA_01040	0.24	+1.6
1,135,330	-		CCNA_01040	0.24	+0.2
1,135,330	-		CCNA_01040	0.24	+1.0
1,135,330	-				+2.6
1,135,330	-		CCNA_01040	0.24	+0.4
1,135,330	-		CCNA_01040	0.24	-0.8
1,135,330	-		CCNA_01040	0.24	-1.2
1,135,335	-		CCNA_01040	0.25	-0.4
1,135,346	-		CCNA_01040	0.25	+1.0
1,135,364	+		CCNA_01040	0.27	-1.5
1,135,401	-		CCNA_01040	0.29	+0.2
1,135,401	-		CCNA_01040	0.29	+0.1
1,135,401	-		CCNA_01040	0.29	-1.3
1,135,420	-		CCNA_01040	0.30	-1.2
1,135,534	+		CCNA_01040	0.37	+1.2
1,135,539	-		CCNA_01040	0.37	+0.5
1,135,561	+		CCNA_01040	0.39	+0.6
1,135,568	+		CCNA_01040	0.39	-0.1
1,135,583	+		CCNA_01040	0.40	+0.6
1,135,591	-		CCNA_01040	0.40	-0.2
1,135,591	-		CCNA_01040	0.40	-1.8
1,135,610	-		CCNA_01040	0.41	-0.6
1,135,620	-		CCNA_01040	0.42	-0.2
1,135,637	-		CCNA_01040	0.43	+1.2
1,135,640	-		CCNA_01040	0.43	-0.0
1,135,653	+		CCNA_01040	0.44	-1.4
1,135,657	+		CCNA_01040	0.44	+2.6
1,135,661	-				+3.2
1,135,661	-		CCNA_01040	0.45	+0.2
1,135,661	-		CCNA_01040	0.45	-0.1
1,135,696	-		CCNA_01040	0.47	+0.3
1,135,748	+		CCNA_01040	0.50	+0.6
1,135,754	-		CCNA_01040	0.50	-1.8
1,135,754	-		CCNA_01040	0.50	-1.3
1,135,754	-		CCNA_01040	0.50	-0.9
1,135,756	+		CCNA_01040	0.50	-2.0
1,135,790	+		CCNA_01040	0.52	-0.2
1,135,798	-		CCNA_01040	0.53	+0.2
1,135,820	-		CCNA_01040	0.54	-1.1
1,135,822	+		CCNA_01040	0.54	-2.0
1,135,863	-		CCNA_01040	0.57	+1.0
1,135,868	-		CCNA_01040	0.57	-0.8
1,135,868	-		CCNA_01040	0.57	-0.0
1,135,868	-		CCNA_01040	0.57	-0.6
1,135,868	-		CCNA_01040	0.57	+1.6
1,135,898	-		CCNA_01040	0.59	-1.1
1,135,909	+		CCNA_01040	0.60	-0.4
1,135,917	-		CCNA_01040	0.60	-2.0
1,135,950	+		CCNA_01040	0.62	+2.6
1,136,001	+		CCNA_01040	0.65	+0.6
1,136,051	+		CCNA_01040	0.68	+0.6
1,136,051	+		CCNA_01040	0.68	-1.8
1,136,051	+		CCNA_01040	0.68	-1.3
1,136,059	-		CCNA_01040	0.69	-1.3
1,136,059	-		CCNA_01040	0.69	+1.0
1,136,059	-		CCNA_01040	0.69	-1.6
1,136,061	-		CCNA_01040	0.69	+0.2
1,136,063	+				+1.6
1,136,071	-		CCNA_01040	0.70	-0.6
1,136,082	-		CCNA_01040	0.70	+1.6
1,136,085	+		CCNA_01040	0.70	+0.8
1,136,104	+		CCNA_01040	0.72	-0.2
1,136,117	-		CCNA_01040	0.72	-0.2
1,136,131	-		CCNA_01040	0.73	+1.6
1,136,139	-		CCNA_01040	0.74	-0.9
1,136,162	+		CCNA_01040	0.75	-1.1
1,136,170	-		CCNA_01040	0.76	-0.8
1,136,170	-		CCNA_01040	0.76	-2.0
1,136,184	+		CCNA_01040	0.76	-0.0
1,136,242	+		CCNA_01040	0.80	+0.6
1,136,243	+		CCNA_01040	0.80	-0.4
1,136,251	-		CCNA_01040	0.81	-0.8
1,136,251	-		CCNA_01040	0.81	-1.3
1,136,315	+		CCNA_01040	0.84	-1.4
1,136,321	-		CCNA_01040	0.85	-1.0
1,136,321	-		CCNA_01040	0.85	-1.9
1,136,345	-		CCNA_01040	0.86	-1.3
1,136,365	-		CCNA_01040	0.88	+1.6
1,136,426	-				+1.6
1,136,452	+				-0.8
1,136,529	+				+1.6
1,136,529	+				-0.3
1,136,537	-				-0.6
1,136,552	+				-0.0
1,136,598	+		CCNA_01041	0.21	+1.0
1,136,606	-		CCNA_01041	0.27	-0.8
1,136,606	-		CCNA_01041	0.27	+1.6
1,136,606	-		CCNA_01041	0.27	-1.8
1,136,671	+		CCNA_01041	0.75	+1.6
1,136,671	+		CCNA_01041	0.75	-1.0
1,136,671	+		CCNA_01041	0.75	-0.7
1,136,671	+		CCNA_01041	0.75	-0.3
1,136,679	-		CCNA_01041	0.81	-1.4
1,136,720	+				-1.3
1,136,739	+				-2.0
1,136,739	+				+1.6
1,136,739	+				-0.8
1,136,739	+				-3.1
1,136,747	-				-0.4
1,136,747	-				-0.0
1,136,747	-				-0.3
1,136,748	-				-1.3
1,136,752	+				+1.0
1,136,828	-				-0.0
1,136,844	+				+1.6
1,136,872	+				-0.6
1,136,880	-				-0.1
1,136,880	-				-0.3
1,136,888	-				+0.8
1,136,926	-				-0.6
1,136,932	-				+2.6
1,136,934	+				-0.0
1,136,934	+				+0.2
1,136,934	+				+1.0
1,136,942	-				+1.0
1,136,944	+				+1.0
1,136,952	-				+0.6
1,136,963	-				+1.6
1,136,990	+				+0.6
1,137,008	-				+2.3
1,137,093	-				-0.8
1,137,098	-				-0.0
1,137,101	+				+2.8
1,137,119	+				+0.8
1,137,127	-				+0.2
1,137,128	-				-0.6
1,137,161	+				+0.6
1,137,161	+				-0.1
1,137,161	+				+0.4
1,137,161	+				+0.1
1,137,169	-				+0.3
1,137,169	-				+0.3
1,137,205	-				+1.3
1,137,207	-				+1.6
1,137,264	-				+2.2
1,137,265	+				-1.0
1,137,271	-				+1.7
1,137,273	-				+1.7
1,137,274	+				-0.0
1,137,284	+				-1.8
1,137,333	+				-0.4
1,137,333	+				-2.1
1,137,362	-				+2.1
1,137,363	-				+1.9
1,137,363	-				+1.5
1,137,368	-				+1.5
1,137,373	-				+1.7
1,137,376	-				+1.5
1,137,396	+				+2.6
1,137,404	-				+2.2
1,137,421	-				+1.1
1,137,465	+				-2.6
1,137,474	-				+1.6
1,137,505	-				+0.7
1,137,510	+				+0.2
1,137,510	+				+0.5
1,137,516	+				-0.6
1,137,516	+				-0.3
1,137,524	-		CCNA_01042	0.10	+2.0
1,137,524	-		CCNA_01042	0.10	+3.1
1,137,524	-		CCNA_01042	0.10	+1.6
1,137,524	-		CCNA_01042	0.10	+2.3
1,137,524	-		CCNA_01042	0.10	+1.9
1,137,531	+		CCNA_01042	0.11	+2.6
1,137,531	+		CCNA_01042	0.11	-0.0