Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01034

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,122,269	+		CCNA_01033	0.27	+1.3
1,122,273	+		CCNA_01033	0.28	+1.3
1,122,292	-		CCNA_01033	0.30	-1.8
1,122,326	+		CCNA_01033	0.33	+1.5
1,122,326	+		CCNA_01033	0.33	+1.8
1,122,334	-		CCNA_01033	0.34	-0.6
1,122,350	+		CCNA_01033	0.35	+2.1
1,122,351	+		CCNA_01033	0.36	+2.6
1,122,358	-		CCNA_01033	0.36	+0.0
1,122,379	+		CCNA_01033	0.38	+2.5
1,122,382	+		CCNA_01033	0.39	+1.9
1,122,382	+		CCNA_01033	0.39	+0.9
1,122,387	-		CCNA_01033	0.39	-1.4
1,122,413	+		CCNA_01033	0.42	+3.0
1,122,419	-		CCNA_01033	0.42	-1.5
1,122,419	-		CCNA_01033	0.42	+0.0
1,122,419	-		CCNA_01033	0.42	+0.6
1,122,432	+		CCNA_01033	0.44	+2.2
1,122,456	-		CCNA_01033	0.46	-0.4
1,122,476	-		CCNA_01033	0.48	+1.0
1,122,499	-		CCNA_01033	0.50	+1.6
1,122,510	+		CCNA_01033	0.52	+2.4
1,122,518	-		CCNA_01033	0.52	+0.6
1,122,545	+		CCNA_01033	0.55	+3.0
1,122,553	-				+2.6
1,122,609	+		CCNA_01033	0.61	+2.2
1,122,643	+		CCNA_01033	0.65	+0.9
1,122,665	-		CCNA_01033	0.67	-0.4
1,122,667	+		CCNA_01033	0.67	+1.9
1,122,680	+		CCNA_01033	0.69	+2.3
1,122,692	+		CCNA_01033	0.70	+2.8
1,122,692	+		CCNA_01033	0.70	+2.4
1,122,700	-		CCNA_01033	0.71	+0.8
1,122,700	-		CCNA_01033	0.71	-0.4
1,122,731	+		CCNA_01033	0.74	+2.4
1,122,760	-		CCNA_01033	0.77	+1.0
1,122,783	+		CCNA_01033	0.79	+2.8
1,122,790	+		CCNA_01033	0.80	+2.1
1,122,818	-		CCNA_01033	0.82	+0.0
1,122,864	+		CCNA_01033	0.87	+2.5
1,122,877	-		CCNA_01033	0.88	+1.6
1,122,892	+		CCNA_01033	0.90	+2.4
1,122,900	-				+0.6
1,122,911	+				+2.2
1,122,918	+				+3.3
1,122,938	+				+3.2
1,122,995	-				-0.2
1,123,045	-				-0.9
1,123,057	-				-1.2
1,123,068	-				-0.6
1,123,093	+				-0.4
1,123,093	+				-2.1
1,123,116	+				-2.5
1,123,126	+				+0.4
1,123,189	-				-1.0
1,123,223	+				+0.4
1,123,223	+				+1.3
1,123,231	-				-1.2
1,123,236	+				+0.2
1,123,327	-				-0.2
1,123,339	+				-1.4
1,123,396	+				-0.8
1,123,404	+				-1.7
1,123,430	-				-0.6
1,123,499	+				-1.5
1,123,499	+				+1.4
1,123,499	+				+0.3
1,123,499	+				-1.0
1,123,507	-				-0.4
1,123,507	-				-0.2
1,123,507	-				+0.3
1,123,507	-				-0.7
1,123,507	-				-0.4
1,123,521	-				+0.3
1,123,552	+				-0.4
1,123,557	+				-1.3
1,123,563	-				-1.9
1,123,587	+		CCNA_01034	0.10	-0.7
1,123,617	-		CCNA_01034	0.11	+0.3
1,123,630	+		CCNA_01034	0.11	+0.0
1,123,669	+		CCNA_01034	0.13	-0.5
1,123,669	+		CCNA_01034	0.13	+0.3
1,123,677	-		CCNA_01034	0.13	-0.7
1,123,677	-		CCNA_01034	0.13	-1.9
1,123,677	-		CCNA_01034	0.13	-2.0
1,123,677	-		CCNA_01034	0.13	-0.2
1,123,731	-		CCNA_01034	0.14	+0.6
1,123,745	+		CCNA_01034	0.15	-0.7
1,123,745	+		CCNA_01034	0.15	-0.1
1,123,788	-		CCNA_01034	0.16	-0.4
1,123,788	-		CCNA_01034	0.16	-1.7
1,123,793	-		CCNA_01034	0.16	-0.3
1,123,795	+		CCNA_01034	0.16	+0.6
1,123,803	-		CCNA_01034	0.17	-0.8
1,123,813	-		CCNA_01034	0.17	+1.0
1,123,830	-		CCNA_01034	0.17	-1.0
1,123,851	+		CCNA_01034	0.18	+0.3
1,123,883	+		CCNA_01034	0.19	-0.2
1,123,889	+		CCNA_01034	0.19	-0.4
1,123,891	-		CCNA_01034	0.19	-0.2
1,123,951	+		CCNA_01034	0.21	-1.4
1,123,960	-		CCNA_01034	0.21	+2.2
1,123,969	-		CCNA_01034	0.22	-1.7
1,123,998	-		CCNA_01034	0.23	+1.2
1,123,998	-		CCNA_01034	0.23	+0.4
1,124,011	+		CCNA_01034	0.23	-0.9
1,124,019	-		CCNA_01034	0.23	+0.0
1,124,038	-		CCNA_01034	0.24	-0.6
1,124,059	+		CCNA_01034	0.24	-0.7
1,124,067	-		CCNA_01034	0.25	-1.7
1,124,083	+		CCNA_01034	0.25	+0.8
1,124,105	+		CCNA_01034	0.26	-1.4
1,124,189	+		CCNA_01034	0.28	-1.7
1,124,197	-		CCNA_01034	0.29	-0.6
1,124,207	-		CCNA_01034	0.29	+0.6
1,124,240	+		CCNA_01034	0.30	-0.6
1,124,281	+		CCNA_01034	0.31	+0.6
1,124,320	+		CCNA_01034	0.32	-0.4
1,124,343	-		CCNA_01034	0.33	-1.4
1,124,356	+		CCNA_01034	0.33	-0.7
1,124,360	-		CCNA_01034	0.34	-0.8
1,124,360	-		CCNA_01034	0.34	+1.0
1,124,364	-		CCNA_01034	0.34	-1.4
1,124,364	-		CCNA_01034	0.34	-0.1
1,124,375	-		CCNA_01034	0.34	+0.6
1,124,378	+		CCNA_01034	0.34	-1.0
1,124,386	-		CCNA_01034	0.34	-0.2
1,124,391	-		CCNA_01034	0.35	-0.6
1,124,393	+		CCNA_01034	0.35	-1.0
1,124,393	+		CCNA_01034	0.35	+1.0
1,124,393	+		CCNA_01034	0.35	-0.2
1,124,393	+		CCNA_01034	0.35	-0.1
1,124,393	+		CCNA_01034	0.35	+0.3
1,124,393	+		CCNA_01034	0.35	-1.4
1,124,401	-		CCNA_01034	0.35	-2.4
1,124,401	-		CCNA_01034	0.35	-0.2
1,124,403	+		CCNA_01034	0.35	+2.0
1,124,403	+		CCNA_01034	0.35	+0.3
1,124,411	-		CCNA_01034	0.35	-1.3
1,124,411	-		CCNA_01034	0.35	+0.7
1,124,413	+		CCNA_01034	0.35	-0.9
1,124,413	+		CCNA_01034	0.35	+0.0
1,124,421	-		CCNA_01034	0.35	+0.0
1,124,429	+		CCNA_01034	0.36	-0.6
1,124,511	+		CCNA_01034	0.38	-0.2
1,124,562	+		CCNA_01034	0.40	-0.4
1,124,581	+		CCNA_01034	0.40	+0.3
1,124,586	-		CCNA_01034	0.40	-1.2
1,124,589	-		CCNA_01034	0.41	-0.3
1,124,601	+		CCNA_01034	0.41	-0.4
1,124,630	-		CCNA_01034	0.42	-2.2
1,124,633	+		CCNA_01034	0.42	+1.6
1,124,641	-		CCNA_01034	0.42	+0.6
1,124,658	-		CCNA_01034	0.43	+0.0
1,124,669	-		CCNA_01034	0.43	+0.0
1,124,669	-		CCNA_01034	0.43	-1.7
1,124,670	+		CCNA_01034	0.43	-0.4
1,124,671	+		CCNA_01034	0.43	+0.3
1,124,680	+		CCNA_01034	0.43	-0.7
1,124,680	+		CCNA_01034	0.43	+0.6
1,124,680	+		CCNA_01034	0.43	-0.1
1,124,680	+		CCNA_01034	0.43	+1.3
1,124,688	-		CCNA_01034	0.44	-0.7
1,124,688	-		CCNA_01034	0.44	+1.0
1,124,688	-		CCNA_01034	0.44	-1.0
1,124,690	+		CCNA_01034	0.44	-1.1
1,124,690	+		CCNA_01034	0.44	-2.4
1,124,693	-		CCNA_01034	0.44	-1.0
1,124,698	-		CCNA_01034	0.44	+0.6
1,124,698	-		CCNA_01034	0.44	+0.6
1,124,726	+		CCNA_01034	0.45	-0.9
1,124,746	+		CCNA_01034	0.45	-0.3
1,124,780	+		CCNA_01034	0.46	-1.3
1,124,854	+		CCNA_01034	0.49	+1.0
1,124,856	+		CCNA_01034	0.49	-1.1
1,124,856	+		CCNA_01034	0.49	-0.9
1,124,856	+		CCNA_01034	0.49	-0.4
1,124,862	-		CCNA_01034	0.49	+0.3
1,124,877	+		CCNA_01034	0.49	-1.9
1,124,907	+		CCNA_01034	0.50	-0.2
1,124,915	+		CCNA_01034	0.51	-1.1
1,124,924	-		CCNA_01034	0.51	-0.7
1,124,929	-		CCNA_01034	0.51	+2.6
1,124,938	+		CCNA_01034	0.51	+0.6
1,124,938	+		CCNA_01034	0.51	-0.7
1,124,946	-		CCNA_01034	0.51	-1.2
1,124,946	-		CCNA_01034	0.51	-1.5
1,124,950	+		CCNA_01034	0.52	+0.8
1,124,962	+		CCNA_01034	0.52	+0.0
1,124,995	+		CCNA_01034	0.53	-0.9
1,125,003	-		CCNA_01034	0.53	-2.3
1,125,003	-		CCNA_01034	0.53	-1.3
1,125,005	+		CCNA_01034	0.53	+1.6
1,125,029	+		CCNA_01034	0.54	+0.3
1,125,037	-		CCNA_01034	0.54	-1.4
1,125,101	-		CCNA_01034	0.56	+1.0
1,125,108	+		CCNA_01034	0.56	-1.6
1,125,147	+		CCNA_01034	0.58	+0.3
1,125,155	-		CCNA_01034	0.58	-0.7
1,125,162	+		CCNA_01034	0.58	-0.7
1,125,162	+		CCNA_01034	0.58	-2.7
1,125,162	+		CCNA_01034	0.58	+0.9
1,125,162	+		CCNA_01034	0.58	-0.4
1,125,170	-		CCNA_01034	0.58	-0.4
1,125,170	-		CCNA_01034	0.58	+0.7
1,125,170	-		CCNA_01034	0.58	-3.4
1,125,170	-		CCNA_01034	0.58	+1.6
1,125,171	-		CCNA_01034	0.58	-2.3
1,125,186	+		CCNA_01034	0.59	-0.5
1,125,186	+		CCNA_01034	0.59	-1.2
1,125,186	+		CCNA_01034	0.59	-1.7
1,125,186	+		CCNA_01034	0.59	+0.2
1,125,225	+		CCNA_01034	0.60	-1.2
1,125,227	+		CCNA_01034	0.60	+1.6
1,125,227	+		CCNA_01034	0.60	-1.4
1,125,233	-		CCNA_01034	0.60	-2.8
1,125,233	-		CCNA_01034	0.60	-0.0
1,125,287	+				+1.0
1,125,292	+		CCNA_01034	0.62	-1.6
1,125,308	+		CCNA_01034	0.62	-1.6
1,125,313	+		CCNA_01034	0.63	-0.9
1,125,316	-		CCNA_01034	0.63	+0.3
1,125,316	-		CCNA_01034	0.63	-1.0
1,125,348	+		CCNA_01034	0.64	+1.0
1,125,377	+		CCNA_01034	0.65	-0.9
1,125,387	+		CCNA_01034	0.65	-0.4
1,125,421	+		CCNA_01034	0.66	-1.0
1,125,445	+		CCNA_01034	0.67	-0.2
1,125,452	-		CCNA_01034	0.67	+0.3
1,125,488	-		CCNA_01034	0.68	-0.6
1,125,497	+		CCNA_01034	0.68	-2.1
1,125,505	+		CCNA_01034	0.68	-0.9
1,125,505	-		CCNA_01034	0.68	-0.3
1,125,520	+		CCNA_01034	0.69	+0.0
1,125,528	-		CCNA_01034	0.69	-0.9
1,125,542	-		CCNA_01034	0.70	+0.3
1,125,542	-		CCNA_01034	0.70	-1.0
1,125,563	-		CCNA_01034	0.70	-0.3
1,125,563	-		CCNA_01034	0.70	-0.7
1,125,568	-		CCNA_01034	0.70	+1.0
1,125,595	+		CCNA_01034	0.71	-1.4
1,125,595	+		CCNA_01034	0.71	+0.4
1,125,603	-		CCNA_01034	0.71	+2.6
1,125,652	+		CCNA_01034	0.73	+0.3
1,125,676	-		CCNA_01034	0.74	-1.3
1,125,720	+		CCNA_01034	0.75	+2.6
1,125,729	-		CCNA_01034	0.75	-1.9
1,125,734	-		CCNA_01034	0.75	-1.4
1,125,749	+		CCNA_01034	0.76	+0.3
1,125,817	+		CCNA_01034	0.78	+0.2
1,125,830	+		CCNA_01034	0.78	-1.4
1,125,830	+		CCNA_01034	0.78	-2.0
1,125,838	-		CCNA_01034	0.79	+1.6
1,125,875	+		CCNA_01034	0.80	-0.4
1,125,875	+		CCNA_01034	0.80	-0.9
1,125,875	+		CCNA_01034	0.80	+0.0
1,125,883	-		CCNA_01034	0.80	-0.6
1,125,883	-		CCNA_01034	0.80	+0.8
1,125,883	-		CCNA_01034	0.80	-1.2
1,125,883	-		CCNA_01034	0.80	-1.0
1,125,883	-		CCNA_01034	0.80	-0.9
1,125,883	-		CCNA_01034	0.80	+0.3
1,125,888	-		CCNA_01034	0.80	-1.9
1,125,913	+		CCNA_01034	0.81	-0.2
1,125,921	-		CCNA_01034	0.81	+0.6
1,125,932	+		CCNA_01034	0.81	-1.7
1,125,937	+		CCNA_01034	0.82	-1.9
1,125,945	+		CCNA_01034	0.82	+0.6
1,125,990	+		CCNA_01034	0.83	-2.4
1,126,024	-		CCNA_01034	0.84	+1.6
1,126,037	+		CCNA_01034	0.85	-1.6
1,126,040	-		CCNA_01034	0.85	-0.9
1,126,042	+		CCNA_01034	0.85	-3.1
1,126,045	-		CCNA_01034	0.85	-2.2
1,126,082	-		CCNA_01034	0.86	+0.6
1,126,122	+		CCNA_01034	0.87	-1.7
1,126,127	+		CCNA_01034	0.87	-0.6
1,126,129	-		CCNA_01034	0.87	+0.6
1,126,207	-		CCNA_01034	0.90	-0.6
1,126,290	-				-0.2
1,126,295	+				+0.6
1,126,295	+				+0.3
1,126,303	-				-0.1
1,126,303	-				-2.4
1,126,308	+				+3.2
1,126,313	+				+0.6
1,126,313	+				+0.3
1,126,350	+				+0.3
1,126,350	+				-0.8
1,126,358	-				-2.2
1,126,358	-				-0.4
1,126,358	-				+1.0
1,126,358	-				+0.6
1,126,404	+				-0.4
1,126,404	+				+2.6
1,126,407	-				-1.1
1,126,412	-				-0.0
1,126,412	-				+0.6
1,126,467	+				-2.2
1,126,534	+				+1.1
1,126,542	-				-0.5
1,126,547	+				+1.2
1,126,551	-				+0.1
1,126,551	-				+0.3
1,126,552	+				+1.2
1,126,555	-				-0.4
1,126,555	-				-1.3
1,126,579	+				+1.9
1,126,579	+				+2.0
1,126,584	+				+1.4
1,126,584	+				+1.1
1,126,592	-				-0.7
1,126,608	-				+0.3
1,126,610	-				-0.7
1,126,614	+				+1.3
1,126,696	+				-0.0
1,126,712	-				+0.5
1,126,826	-		CCNA_01035	0.15	+2.6
1,126,873	+		CCNA_01035	0.18	-0.7
1,126,881	-		CCNA_01035	0.18	+2.0
1,126,926	+		CCNA_01035	0.20	+3.3
1,126,939	-		CCNA_01035	0.21	-0.9
1,126,942	+		CCNA_01035	0.21	+0.1
1,126,992	+		CCNA_01035	0.24	-0.3
1,127,045	+		CCNA_01035	0.27	+0.6
1,127,118	+		CCNA_01035	0.30	+1.6
1,127,137	+		CCNA_01035	0.31	+0.9
1,127,148	+		CCNA_01035	0.32	+2.1
1,127,235	+		CCNA_01035	0.37	+0.7
1,127,243	-		CCNA_01035	0.37	-0.0
1,127,290	+		CCNA_01035	0.40	+1.8
1,127,372	+		CCNA_01035	0.44	+0.3
1,127,377	+		CCNA_01035	0.44	+1.4
1,127,377	+		CCNA_01035	0.44	+1.7
1,127,438	+		CCNA_01035	0.47	+0.2
1,127,438	+		CCNA_01035	0.47	+0.2