Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01001

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,082,032	+				+3.0
1,082,035	-		CCNA_00999	0.10	+1.6
1,082,132	+		CCNA_00999	0.30	+2.8
1,082,140	-		CCNA_00999	0.31	-0.7
1,082,171	+		CCNA_00999	0.38	+3.1
1,082,171	+		CCNA_00999	0.38	+2.5
1,082,202	+		CCNA_00999	0.44	+2.9
1,082,209	+		CCNA_00999	0.45	+2.9
1,082,242	+		CCNA_00999	0.52	+3.8
1,082,256	-		CCNA_00999	0.55	+2.6
1,082,292	-		CCNA_00999	0.62	+1.6
1,082,292	-		CCNA_00999	0.62	-0.5
1,082,292	-		CCNA_00999	0.62	+1.6
1,082,333	+		CCNA_00999	0.70	+3.3
1,082,341	-		CCNA_00999	0.72	-0.4
1,082,397	+		CCNA_00999	0.83	+3.3
1,082,446	+				+1.0
1,082,457	-				+0.2
1,082,484	-				+1.2
1,082,526	-				-1.3
1,082,526	-				-0.5
1,082,526	-				+0.2
1,082,547	-				-1.0
1,082,576	-		CCNA_01000	0.21	-1.0
1,082,582	-		CCNA_01000	0.24	-2.7
1,082,582	-		CCNA_01000	0.24	-1.1
1,082,582	-		CCNA_01000	0.24	+0.0
1,082,582	-		CCNA_01000	0.24	-1.5
1,082,582	-		CCNA_01000	0.24	+1.6
1,082,582	-		CCNA_01000	0.24	-1.6
1,082,582	-		CCNA_01000	0.24	-0.5
1,082,582	-		CCNA_01000	0.24	-1.7
1,082,584	-		CCNA_01000	0.25	-0.2
1,082,739	-				+1.0
1,082,739	-				+2.6
1,082,748	+				+0.5
1,082,756	-				+0.9
1,082,765	+				+3.1
1,082,765	+				+2.8
1,082,770	+				-0.0
1,082,770	+				-2.2
1,082,770	+				+1.6
1,082,770	+				+0.2
1,082,770	+				-1.1
1,082,770	+				+0.2
1,082,778	-				-0.1
1,082,793	-				+0.2
1,082,793	-				-0.3
1,082,982	-				+2.0
1,082,983	-				+1.8
1,082,983	-				+1.8
1,082,993	-				+1.3
1,083,052	-				-0.2
1,083,111	-				-1.1
1,083,132	+		CCNA_01001	0.11	-1.0
1,083,140	-		CCNA_01001	0.12	-1.3
1,083,142	+		CCNA_01001	0.12	-2.8
1,083,175	-		CCNA_01001	0.16	-0.2
1,083,213	+		CCNA_01001	0.20	+0.3
1,083,213	+		CCNA_01001	0.20	-1.1
1,083,221	-		CCNA_01001	0.21	-0.7
1,083,221	-		CCNA_01001	0.21	-1.3
1,083,246	-		CCNA_01001	0.24	-0.9
1,083,281	-		CCNA_01001	0.28	-2.2
1,083,343	+		CCNA_01001	0.34	+2.2
1,083,343	+		CCNA_01001	0.34	-0.5
1,083,348	+		CCNA_01001	0.35	-0.4
1,083,351	-		CCNA_01001	0.35	-2.0
1,083,351	-		CCNA_01001	0.35	-0.0
1,083,356	-		CCNA_01001	0.36	-0.4
1,083,446	-		CCNA_01001	0.46	+0.3
1,083,500	+		CCNA_01001	0.52	+0.6
1,083,503	-		CCNA_01001	0.52	-2.6
1,083,536	-		CCNA_01001	0.56	-0.4
1,083,591	-		CCNA_01001	0.62	-1.8
1,083,596	-		CCNA_01001	0.62	-1.7
1,083,602	-		CCNA_01001	0.63	-0.5
1,083,641	+		CCNA_01001	0.67	-2.1
1,083,656	-		CCNA_01001	0.69	-0.5
1,083,659	+		CCNA_01001	0.69	-1.8
1,083,659	+		CCNA_01001	0.69	-1.5
1,083,659	+		CCNA_01001	0.69	-2.4
1,083,818	-		CCNA_01001	0.87	-1.3
1,083,841	+		CCNA_01001	0.89	-0.4
1,083,903	-				-1.5
1,083,903	-				-1.4
1,083,950	-				+1.6
1,084,011	+				+1.0
1,084,019	-				+2.6
1,084,019	-				+2.1
1,084,042	-		CCNA_01002	0.10	+2.4
1,084,089	-		CCNA_01002	0.16	+1.6
1,084,146	+		CCNA_01002	0.23	+2.6
1,084,171	+		CCNA_01002	0.26	-0.7
1,084,179	-		CCNA_01002	0.27	+0.4
1,084,192	+		CCNA_01002	0.29	+0.3
1,084,229	+		CCNA_01002	0.33	+0.3
1,084,252	-		CCNA_01002	0.36	+0.3
1,084,252	-		CCNA_01002	0.36	+1.3
1,084,264	-		CCNA_01002	0.38	+0.6
1,084,292	-		CCNA_01002	0.41	+1.9
1,084,295	+		CCNA_01002	0.42	-0.2
1,084,295	+		CCNA_01002	0.42	-0.2
1,084,339	+		CCNA_01002	0.47	+0.6
1,084,342	-		CCNA_01002	0.48	+2.0
1,084,401	-		CCNA_01002	0.55	+0.9
1,084,431	+		CCNA_01002	0.59	+1.0
1,084,436	+		CCNA_01002	0.59	+0.6
1,084,451	+		CCNA_01002	0.61	-0.4
1,084,459	-		CCNA_01002	0.62	+1.3
1,084,459	-		CCNA_01002	0.62	+0.6
1,084,492	-		CCNA_01002	0.66	-1.8
1,084,494	+		CCNA_01002	0.67	+1.6
1,084,497	-		CCNA_01002	0.67	+1.3
1,084,503	-		CCNA_01002	0.68	+0.3
1,084,503	-		CCNA_01002	0.68	+1.0
1,084,556	-		CCNA_01002	0.74	+1.7
1,084,556	-		CCNA_01002	0.74	+2.6
1,084,563	-		CCNA_01002	0.75	-0.1
1,084,563	-		CCNA_01002	0.75	+2.3
1,084,567	+		CCNA_01002	0.76	-1.2
1,084,602	+		CCNA_01002	0.80	+0.3
1,084,605	-		CCNA_01002	0.80	+0.8
1,084,605	-		CCNA_01002	0.80	+0.6
1,084,618	-		CCNA_01002	0.82	+0.6
1,084,645	-		CCNA_01002	0.85	+2.0
1,084,650	-		CCNA_01002	0.86	+1.0
1,084,675	-		CCNA_01002	0.89	+0.3
1,084,680	-		CCNA_01002	0.90	+1.2
1,084,680	-		CCNA_01002	0.90	+0.6
1,084,696	-				+1.7
1,084,723	-				+2.6
1,084,723	-				+2.6
1,084,732	+				+0.3
1,084,739	+				-1.6
1,084,739	+				-0.2
1,084,747	-				+0.0
1,084,764	+				+0.0
1,084,844	-		CCNA_01003	0.26	+0.8
1,084,865	-		CCNA_01003	0.32	+0.6
1,084,917	-		CCNA_01003	0.49	-0.5
1,084,922	-		CCNA_01003	0.50	+2.1
1,084,937	+		CCNA_01003	0.55	-0.2
1,084,937	+		CCNA_01003	0.55	+1.6
1,084,937	+		CCNA_01003	0.55	+1.0
1,084,937	+		CCNA_01003	0.55	-1.0
1,084,937	+		CCNA_01003	0.55	+2.6