Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00941

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,016,156	-		CCNA_00940	0.52	-0.4
1,016,232	+		CCNA_00940	0.55	-0.7
1,016,235	-		CCNA_00940	0.56	-1.1
1,016,235	-		CCNA_00940	0.56	+1.2
1,016,237	+		CCNA_00940	0.56	-2.0
1,016,240	-		CCNA_00940	0.56	-2.6
1,016,349	+		CCNA_00940	0.61	+0.4
1,016,349	+		CCNA_00940	0.61	-0.4
1,016,349	+		CCNA_00940	0.61	+1.6
1,016,349	+		CCNA_00940	0.61	-1.5
1,016,349	+		CCNA_00940	0.61	-0.9
1,016,384	+		CCNA_00940	0.63	+2.8
1,016,392	-		CCNA_00940	0.63	-0.7
1,016,402	-		CCNA_00940	0.64	-0.5
1,016,461	+		CCNA_00940	0.67	-1.3
1,016,461	-		CCNA_00940	0.67	+1.0
1,016,469	-		CCNA_00940	0.67	+1.0
1,016,666	+		CCNA_00940	0.77	-2.1
1,016,707	-		CCNA_00940	0.79	-1.0
1,016,707	-		CCNA_00940	0.79	+0.3
1,016,712	-		CCNA_00940	0.79	-1.5
1,016,717	-		CCNA_00940	0.79	-0.7
1,016,732	+		CCNA_00940	0.80	-1.3
1,016,740	-		CCNA_00940	0.80	-0.5
1,016,763	-		CCNA_00940	0.82	-0.4
1,016,763	-		CCNA_00940	0.82	+1.0
1,016,763	-		CCNA_00940	0.82	-0.4
1,016,780	+		CCNA_00940	0.82	-0.5
1,016,784	-		CCNA_00940	0.83	-0.2
1,016,788	-		CCNA_00940	0.83	-3.6
1,016,788	-		CCNA_00940	0.83	-0.7
1,016,788	-		CCNA_00940	0.83	-0.5
1,016,788	-				+1.0
1,016,809	+		CCNA_00940	0.84	+1.3
1,016,820	+		CCNA_00940	0.84	+2.0
1,016,869	+		CCNA_00940	0.87	-0.8
1,016,893	-		CCNA_00940	0.88	+1.5
1,016,898	-		CCNA_00940	0.88	+0.6
1,016,949	+				+0.7
1,016,986	-				+1.5
1,016,992	-				-2.0
1,016,994	-				-1.2
1,017,002	-				-1.6
1,017,003	-				-1.5
1,017,031	+				-0.8
1,017,031	+				-0.5
1,017,039	-				+1.2
1,017,057	+				+0.3
1,017,057	+				-0.8
1,017,087	+				+1.1
1,017,102	+				+0.3
1,017,147	-				-0.3
1,017,152	-				-1.4
1,017,157	-				-1.9
1,017,166	-				+1.5
1,017,166	-				+2.0
1,017,166	-				+1.4
1,017,166	-				+1.0
1,018,410	+				+0.6
1,018,431	+				+1.0
1,018,434	-				+0.6
1,018,438	+				-1.3
1,018,439	-				-0.6
1,018,475	+				-0.7
1,018,481	-				+0.0
1,018,515	-				+0.5
1,018,525	+		CCNA_00942	0.10	-0.2
1,018,530	+		CCNA_00942	0.11	+0.0
1,018,640	-		CCNA_00942	0.23	+0.8
1,018,659	+		CCNA_00942	0.25	+2.6
1,018,679	-		CCNA_00942	0.27	+0.5
1,018,685	+		CCNA_00942	0.28	+2.7
1,018,707	-		CCNA_00942	0.30	+1.0
1,018,750	+		CCNA_00942	0.35	-2.1
1,018,750	+		CCNA_00942	0.35	-2.5
1,018,750	+		CCNA_00942	0.35	-0.7
1,018,755	+		CCNA_00942	0.35	-1.6
1,018,755	+		CCNA_00942	0.35	+0.0
1,018,756	+		CCNA_00942	0.35	-0.7
1,018,763	-		CCNA_00942	0.36	+0.3
1,018,764	-		CCNA_00942	0.36	+0.5
1,018,794	-		CCNA_00942	0.40	-1.2
1,018,804	-		CCNA_00942	0.41	-0.1
1,018,827	+		CCNA_00942	0.43	+2.6
1,018,852	+		CCNA_00942	0.46	-1.2
1,018,852	+		CCNA_00942	0.46	-0.3
1,018,867	+		CCNA_00942	0.48	-1.5
1,018,867	+		CCNA_00942	0.48	+0.6
1,018,867	+		CCNA_00942	0.48	-0.5
1,018,875	-		CCNA_00942	0.48	-0.2
1,018,936	+		CCNA_00942	0.55	+0.7
1,018,944	-		CCNA_00942	0.56	-1.7
1,018,946	+		CCNA_00942	0.56	-2.5
1,018,949	-		CCNA_00942	0.56	+2.6
1,018,954	-		CCNA_00942	0.57	-0.5
1,018,959	+		CCNA_00942	0.57	+0.6
1,018,960	+		CCNA_00942	0.58	-0.5
1,018,967	-		CCNA_00942	0.58	-0.5
1,018,969	+		CCNA_00942	0.59	-0.5
1,018,969	-		CCNA_00942	0.59	-1.6
1,019,000	-		CCNA_00942	0.62	-2.8
1,019,091	-		CCNA_00942	0.72	-0.7
1,019,126	-		CCNA_00942	0.76	-1.1
1,019,146	+		CCNA_00942	0.78	+0.0
1,019,151	+		CCNA_00942	0.78	-1.1
1,019,154	-		CCNA_00942	0.79	-1.2
1,019,154	-		CCNA_00942	0.79	+0.0
1,019,173	+		CCNA_00942	0.81	-0.4
1,019,175	-		CCNA_00942	0.81	-0.4
1,019,175	-		CCNA_00942	0.81	-0.5
1,019,178	+		CCNA_00942	0.81	-1.6
1,019,181	-		CCNA_00942	0.81	+1.6
1,019,186	-		CCNA_00942	0.82	+0.5
1,019,198	-		CCNA_00942	0.83	+0.1
1,019,207	-		CCNA_00942	0.84	-1.8
1,019,224	-		CCNA_00942	0.86	-1.4
1,019,234	+		CCNA_00942	0.87	+0.0
1,019,242	-		CCNA_00942	0.88	-0.8
1,019,269	-				-0.2
1,019,272	+				-1.4
1,019,310	+				+0.6
1,019,310	-				+0.6
1,019,311	-				+1.0
1,019,328	-				+0.2
1,019,328	-				-1.5
1,019,333	-				-1.5
1,019,333	-				+2.9
1,019,343	-				+1.4
1,019,343	-				-1.0
1,019,346	+				-1.5
1,019,346	+				+0.5
1,019,346	+				+1.0
1,019,346	+				-0.7
1,019,354	-				+0.0
1,019,354	-				+1.1
1,019,358	+				+1.0
1,019,358	+				+1.0
1,019,361	-				-0.8