Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00928

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
1,003,447	+		CCNA_00926	0.80	+0.0
1,003,447	+		CCNA_00926	0.80	-1.3
1,003,450	-		CCNA_00926	0.81	+2.7
1,003,450	-		CCNA_00926	0.81	+2.6
1,003,451	-		CCNA_00926	0.81	+1.9
1,003,455	-		CCNA_00926	0.81	-1.7
1,003,504	+		CCNA_00926	0.86	+0.1
1,003,507	-		CCNA_00926	0.87	-1.9
1,003,508	-		CCNA_00926	0.87	+1.1
1,003,530	-		CCNA_00926	0.89	+0.7
1,003,535	-		CCNA_00926	0.90	+0.6
1,003,586	+				+1.6
1,003,621	+				-0.7
1,003,622	+				-0.8
1,003,709	-				-1.7
1,003,709	-				-1.5
1,003,709	-				-2.0
1,003,720	-				-1.2
1,003,724	+				-0.2
1,003,724	+				-0.1
1,003,724	+				+1.6
1,003,748	+				-2.2
1,003,802	+				-1.6
1,003,841	+				-0.5
1,003,841	+				+0.9
1,003,841	+				-0.9
1,003,841	+				-0.5
1,003,841	+				-2.8
1,003,841	+				+1.6
1,003,846	+				+0.4
1,003,849	-				-0.3
1,003,849	-				-0.5
1,003,901	+		CCNA_00927	0.16	+0.4
1,003,903	-		CCNA_00927	0.16	-0.1
1,003,913	-		CCNA_00927	0.18	-1.4
1,003,913	-		CCNA_00927	0.18	+0.1
1,003,924	+		CCNA_00927	0.20	-0.5
1,003,948	-		CCNA_00927	0.23	-0.5
1,003,979	+		CCNA_00927	0.28	+1.9
1,003,979	+		CCNA_00927	0.28	+1.4
1,003,979	+		CCNA_00927	0.28	+2.5
1,003,987	+		CCNA_00927	0.30	-1.9
1,003,993	+		CCNA_00927	0.31	-1.3
1,004,001	-		CCNA_00927	0.32	-0.4
1,004,022	+		CCNA_00927	0.35	+0.1
1,004,044	+		CCNA_00927	0.39	+0.3
1,004,052	-				+0.6
1,004,056	+		CCNA_00927	0.41	+0.3
1,004,064	-		CCNA_00927	0.42	-1.3
1,004,083	-		CCNA_00927	0.45	+0.2
1,004,113	+		CCNA_00927	0.50	+0.1
1,004,184	+		CCNA_00927	0.62	+0.8
1,004,192	-		CCNA_00927	0.63	-0.5
1,004,192	-		CCNA_00927	0.63	-1.1
1,004,207	+		CCNA_00927	0.66	-1.7
1,004,274	+		CCNA_00927	0.76	-3.2
1,004,274	+		CCNA_00927	0.76	-0.2
1,004,274	+		CCNA_00927	0.76	-0.8
1,004,274	+		CCNA_00927	0.76	+0.2
1,004,282	-		CCNA_00927	0.78	+3.6
1,004,292	-		CCNA_00927	0.79	+0.3
1,004,293	-		CCNA_00927	0.80	+1.1
1,004,295	+		CCNA_00927	0.80	+1.6
1,004,302	-		CCNA_00927	0.81	-1.2
1,004,322	+		CCNA_00927	0.84	+0.1
1,004,322	+		CCNA_00927	0.84	-0.2
1,004,322	+		CCNA_00927	0.84	-2.2
1,004,325	-		CCNA_00927	0.85	+1.6
1,004,332	+		CCNA_00927	0.86	+0.6
1,004,340	+		CCNA_00927	0.87	+0.1
1,004,351	+		CCNA_00927	0.89	-0.7
1,004,355	+		CCNA_00927	0.90	-0.7
1,004,404	-				-2.2
1,004,471	-				+3.6
1,004,518	-		CCNA_00928	0.13	-2.1
1,004,522	+		CCNA_00928	0.14	-1.2
1,004,527	+		CCNA_00928	0.15	+0.0
1,004,527	+		CCNA_00928	0.15	-0.5
1,004,527	+		CCNA_00928	0.15	-1.7
1,004,535	-		CCNA_00928	0.16	-1.0
1,004,540	+		CCNA_00928	0.17	-0.7
1,004,540	-		CCNA_00928	0.17	-2.5
1,004,600	+		CCNA_00928	0.25	+0.6
1,004,602	+		CCNA_00928	0.26	+1.6
1,004,602	+		CCNA_00928	0.26	+0.6
1,004,602	+		CCNA_00928	0.26	+0.3
1,004,648	+		CCNA_00928	0.33	-1.0
1,004,648	+		CCNA_00928	0.33	-0.7
1,004,655	-		CCNA_00928	0.34	-0.4
1,004,656	-		CCNA_00928	0.34	+0.0
1,004,672	+		CCNA_00928	0.36	-0.8
1,004,679	-		CCNA_00928	0.37	-0.5
1,004,810	-		CCNA_00928	0.57	-2.3
1,004,820	+		CCNA_00928	0.58	+0.0
1,004,828	-		CCNA_00928	0.59	-0.8
1,004,848	+		CCNA_00928	0.62	+2.6
1,004,859	+		CCNA_00928	0.64	-1.5
1,004,867	+		CCNA_00928	0.65	-1.3
1,004,867	+		CCNA_00928	0.65	-1.3
1,004,922	-		CCNA_00928	0.73	-1.6
1,004,922	-		CCNA_00928	0.73	+0.0
1,005,009	-		CCNA_00928	0.86	-1.4
1,005,043	-				+0.0
1,005,075	+				+1.0
1,005,083	-				-1.1
1,005,085	+				+0.3
1,005,085	+				+1.6
1,005,133	+				-0.5
1,005,133	+				-1.4
1,005,133	+				+1.0
1,005,140	+				+0.6
1,005,177	+				+2.6
1,005,219	-				+0.6
1,005,268	+				-0.7
1,005,283	+				-1.7
1,005,291	-				-1.5
1,005,291	-				+0.2
1,005,291	-				+0.3
1,005,319	+				-1.8
1,005,326	-				+0.6
1,005,356	+		CCNA_00929	0.11	-1.6
1,005,356	+		CCNA_00929	0.11	+0.0
1,005,364	-		CCNA_00929	0.12	-1.2
1,005,379	+		CCNA_00929	0.13	-0.4
1,005,384	+		CCNA_00929	0.14	-0.4
1,005,415	+		CCNA_00929	0.17	-0.2
1,005,415	+		CCNA_00929	0.17	-0.3
1,005,423	-		CCNA_00929	0.18	-1.1
1,005,423	-		CCNA_00929	0.18	+0.6
1,005,423	-		CCNA_00929	0.18	+1.0
1,005,497	+		CCNA_00929	0.25	+0.2
1,005,505	-		CCNA_00929	0.26	-1.5
1,005,536	+		CCNA_00929	0.29	+0.8
1,005,547	+		CCNA_00929	0.30	-1.0
1,005,547	+		CCNA_00929	0.30	-0.2
1,005,547	+		CCNA_00929	0.30	+0.1
1,005,547	+		CCNA_00929	0.30	-0.4
1,005,555	-		CCNA_00929	0.31	-0.7
1,005,561	+		CCNA_00929	0.32	+0.0
1,005,566	+		CCNA_00929	0.32	-1.1
1,005,595	+		CCNA_00929	0.35	+2.6
1,005,596	+		CCNA_00929	0.35	-2.4
1,005,630	-		CCNA_00929	0.38	+1.0
1,005,635	-		CCNA_00929	0.39	-0.5
1,005,664	+		CCNA_00929	0.42	-0.5
1,005,665	+		CCNA_00929	0.42	-0.6
1,005,674	+		CCNA_00929	0.43	-0.2
1,005,682	-		CCNA_00929	0.44	-1.0
1,005,693	+		CCNA_00929	0.45	+0.3
1,005,693	+		CCNA_00929	0.45	-2.4
1,005,693	+		CCNA_00929	0.45	-0.2
1,005,701	-		CCNA_00929	0.46	+1.3
1,005,810	+		CCNA_00929	0.57	+0.6
1,005,817	+		CCNA_00929	0.57	-1.0
1,005,825	-		CCNA_00929	0.58	+0.6
1,005,826	-		CCNA_00929	0.58	+1.6
1,005,842	+		CCNA_00929	0.60	-0.0
1,005,843	+		CCNA_00929	0.60	+0.7
1,005,843	-		CCNA_00929	0.60	-0.2
1,005,873	+		CCNA_00929	0.63	+0.0
1,005,898	+		CCNA_00929	0.65	+0.4
1,005,898	+		CCNA_00929	0.65	+0.1
1,005,906	-		CCNA_00929	0.66	+2.6
1,005,917	+		CCNA_00929	0.67	+0.0
1,005,930	+		CCNA_00929	0.69	+2.0
1,005,971	+		CCNA_00929	0.73	+0.8
1,006,054	+		CCNA_00929	0.81	+1.2
1,006,056	+		CCNA_00929	0.81	-1.3
1,006,056	+		CCNA_00929	0.81	+2.6
1,006,056	+		CCNA_00929	0.81	-0.1
1,006,056	+		CCNA_00929	0.81	+0.1
1,006,056	+		CCNA_00929	0.81	+0.2
1,006,062	+		CCNA_00929	0.82	+1.0
1,006,062	-		CCNA_00929	0.82	-0.7
1,006,064	-		CCNA_00929	0.82	-1.6
1,006,064	-		CCNA_00929	0.82	+0.6
1,006,064	-		CCNA_00929	0.82	+0.6
1,006,100	+		CCNA_00929	0.86	+0.3
1,006,100	-		CCNA_00929	0.86	-0.2