Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00892

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00891 and CCNA_00892 are separated by 486 nucleotidesCCNA_00892 and CCNA_00893 are separated by 159 nucleotides CCNA_00891: CCNA_00891 - transporter, drug/metabolite exporter family, at 968,889 to 969,827 _00891 CCNA_00892: CCNA_00892 - phosphoenolpyruvate-protein phosphotransferase PtsP, at 970,314 to 972,578 _00892 CCNA_00893: CCNA_00893 - helix-turn-helix DNA-binding protein, at 972,738 to 973,802 _00893 Position (kb) 970 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 969.353 kb on + strand, within CCNA_00891at 969.361 kb on - strand, within CCNA_00891at 969.398 kb on + strand, within CCNA_00891at 969.398 kb on + strand, within CCNA_00891at 969.482 kb on - strand, within CCNA_00891at 969.487 kb on - strand, within CCNA_00891at 969.503 kb on - strandat 969.507 kb on - strand, within CCNA_00891at 969.509 kb on + strand, within CCNA_00891at 969.519 kb on + strand, within CCNA_00891at 969.527 kb on - strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.572 kb on + strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.580 kb on - strand, within CCNA_00891at 969.587 kb on - strand, within CCNA_00891at 969.693 kb on + strand, within CCNA_00891at 969.704 kb on + strand, within CCNA_00891at 969.704 kb on + strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.712 kb on - strand, within CCNA_00891at 969.762 kb on + strandat 969.762 kb on + strandat 969.773 kb on + strandat 969.780 kb on + strandat 969.781 kb on - strandat 969.782 kb on + strandat 969.782 kb on + strandat 969.812 kb on + strandat 969.836 kb on + strandat 969.893 kb on + strandat 969.994 kb on + strandat 969.994 kb on + strandat 969.994 kb on + strandat 970.002 kb on - strandat 970.014 kb on - strandat 970.029 kb on + strandat 970.037 kb on + strandat 970.042 kb on + strandat 970.050 kb on - strandat 970.050 kb on - strandat 970.100 kb on + strandat 970.100 kb on + strandat 970.100 kb on - strandat 970.100 kb on - strandat 970.100 kb on - strandat 970.100 kb on - strandat 970.110 kb on - strandat 970.112 kb on + strandat 970.117 kb on + strandat 970.120 kb on - strandat 970.125 kb on - strandat 970.125 kb on - strandat 970.132 kb on + strandat 970.140 kb on - strandat 970.191 kb on - strandat 970.202 kb on - strandat 970.229 kb on + strandat 970.241 kb on + strandat 970.246 kb on + strandat 970.246 kb on + strandat 970.246 kb on + strandat 970.246 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.271 kb on + strandat 970.279 kb on - strandat 970.279 kb on - strandat 970.279 kb on - strandat 970.283 kb on + strandat 970.299 kb on - strandat 970.398 kb on - strandat 970.400 kb on + strandat 970.418 kb on + strandat 970.766 kb on + strand, within CCNA_00892at 970.766 kb on + strand, within CCNA_00892at 970.856 kb on + strand, within CCNA_00892at 970.864 kb on - strand, within CCNA_00892at 971.070 kb on + strand, within CCNA_00892at 971.080 kb on + strand, within CCNA_00892at 971.553 kb on - strand, within CCNA_00892at 971.937 kb on + strand, within CCNA_00892at 972.506 kb on + strandat 972.514 kb on - strandat 972.686 kb on - strandat 972.793 kb on - strandat 972.801 kb on + strandat 972.841 kb on - strandat 972.857 kb on + strand, within CCNA_00893at 973.453 kb on + strand, within CCNA_00893at 973.453 kb on + strand, within CCNA_00893at 973.481 kb on + strand, within CCNA_00893

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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969,353 + CCNA_00891 0.49 -0.3
969,361 - CCNA_00891 0.50 +0.4
969,398 + CCNA_00891 0.54 -0.1
969,398 + CCNA_00891 0.54 +1.1
969,482 - CCNA_00891 0.63 +1.1
969,487 - CCNA_00891 0.64 +1.1
969,503 - +2.7
969,507 - CCNA_00891 0.66 -1.1
969,509 + CCNA_00891 0.66 +0.4
969,519 + CCNA_00891 0.67 -0.1
969,527 - CCNA_00891 0.68 +0.8
969,572 + CCNA_00891 0.73 -1.1
969,572 + CCNA_00891 0.73 -0.3
969,572 + CCNA_00891 0.73 +0.4
969,572 + CCNA_00891 0.73 -0.6
969,572 + CCNA_00891 0.73 -1.8
969,580 - CCNA_00891 0.74 -0.8
969,580 - CCNA_00891 0.74 +1.7
969,580 - CCNA_00891 0.74 -1.7
969,580 - CCNA_00891 0.74 -0.0
969,587 - CCNA_00891 0.74 +0.1
969,693 + CCNA_00891 0.86 -0.1
969,704 + CCNA_00891 0.87 +1.1
969,704 + CCNA_00891 0.87 -0.9
969,712 - CCNA_00891 0.88 +0.4
969,712 - CCNA_00891 0.88 +0.4
969,712 - CCNA_00891 0.88 +0.7
969,712 - CCNA_00891 0.88 +0.2
969,712 - CCNA_00891 0.88 -0.3
969,762 + -0.6
969,762 + -0.1
969,773 + +0.4
969,780 + -0.8
969,781 - -1.9
969,782 + -1.3
969,782 + +0.6
969,812 + -1.4
969,836 + -2.6
969,893 + -0.9
969,994 + -0.9
969,994 + -0.9
969,994 + +1.5
970,002 - -0.6
970,014 - +0.7
970,029 + +1.0
970,037 + -1.6
970,042 + -0.4
970,050 - -1.0
970,050 - -0.8
970,100 + +3.4
970,100 + +3.6
970,100 - -1.3
970,100 - +0.4
970,100 - +0.7
970,100 - +0.4
970,110 - -0.0
970,112 + -0.7
970,117 + +0.1
970,120 - -0.5
970,125 - -1.9
970,125 - +2.7
970,132 + +0.1
970,140 - -0.6
970,191 - -2.4
970,202 - +0.1
970,229 + -1.9
970,241 + -1.5
970,246 + -0.6
970,246 + -1.2
970,246 + -1.3
970,246 + -1.9
970,271 + -3.0
970,271 + +0.1
970,271 + -0.3
970,271 + +0.4
970,271 + -0.8
970,271 + -1.3
970,271 + -0.4
970,279 - +2.1
970,279 - +1.1
970,279 - +1.1
970,283 + +0.7
970,299 - +1.1
970,398 - +0.7
970,400 + +1.7
970,418 + -0.6
970,766 + CCNA_00892 0.20 -0.3
970,766 + CCNA_00892 0.20 +2.3
970,856 + CCNA_00892 0.24 +1.9
970,864 - CCNA_00892 0.24 +1.4
971,070 + CCNA_00892 0.33 +1.1
971,080 + CCNA_00892 0.34 +0.1
971,553 - CCNA_00892 0.55 +0.7
971,937 + CCNA_00892 0.72 +1.7
972,506 + +2.7
972,514 - +2.7
972,686 - +0.7
972,793 - -1.4
972,801 + -0.1
972,841 - +0.4
972,857 + CCNA_00893 0.11 +1.1
973,453 + CCNA_00893 0.67 +0.2
973,453 + CCNA_00893 0.67 +0.2
973,481 + CCNA_00893 0.70 -2.0

Or see this region's nucleotide sequence