Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00860

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00859 and CCNA_00860 are separated by 55 nucleotidesCCNA_00860 and CCNA_00861 are separated by 123 nucleotidesCCNA_00861 and CCNA_00862 are separated by 138 nucleotides CCNA_00859: CCNA_00859 - acetyltransferase, GNAT family, at 937,676 to 938,563 _00859 CCNA_00860: CCNA_00860 - holdfast inhibitor protein HfiA, at 938,619 to 938,855 _00860 CCNA_00861: CCNA_00861 - hypothetical protein, at 938,979 to 939,557 _00861 CCNA_00862: CCNA_00862 - Xylonate dehydratase (EC 4.2.1.82) (from data), at 939,696 to 941,471 _00862 Position (kb) 938 939Strain fitness (log2 ratio) -2 -1 0 1 2 3at 937.627 kb on + strandat 937.708 kb on - strandat 937.778 kb on + strand, within CCNA_00859at 937.805 kb on + strand, within CCNA_00859at 937.841 kb on - strand, within CCNA_00859at 937.842 kb on + strand, within CCNA_00859at 937.861 kb on - strand, within CCNA_00859at 937.884 kb on + strand, within CCNA_00859at 937.900 kb on - strand, within CCNA_00859at 937.935 kb on + strand, within CCNA_00859at 937.935 kb on + strand, within CCNA_00859at 937.936 kb on + strand, within CCNA_00859at 937.943 kb on - strand, within CCNA_00859at 937.969 kb on + strand, within CCNA_00859at 937.969 kb on + strand, within CCNA_00859at 937.969 kb on + strandat 938.009 kb on + strand, within CCNA_00859at 938.047 kb on + strand, within CCNA_00859at 938.053 kb on - strand, within CCNA_00859at 938.055 kb on - strand, within CCNA_00859at 938.089 kb on + strand, within CCNA_00859at 938.115 kb on + strand, within CCNA_00859at 938.123 kb on - strand, within CCNA_00859at 938.192 kb on + strand, within CCNA_00859at 938.197 kb on + strand, within CCNA_00859at 938.197 kb on + strand, within CCNA_00859at 938.200 kb on - strand, within CCNA_00859at 938.220 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.264 kb on + strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.272 kb on - strand, within CCNA_00859at 938.287 kb on - strand, within CCNA_00859at 938.294 kb on + strand, within CCNA_00859at 938.301 kb on + strand, within CCNA_00859at 938.301 kb on - strand, within CCNA_00859at 938.309 kb on - strand, within CCNA_00859at 938.311 kb on + strand, within CCNA_00859at 938.330 kb on + strand, within CCNA_00859at 938.330 kb on + strand, within CCNA_00859at 938.340 kb on + strand, within CCNA_00859at 938.345 kb on - strand, within CCNA_00859at 938.348 kb on - strand, within CCNA_00859at 938.348 kb on - strand, within CCNA_00859at 938.355 kb on - strand, within CCNA_00859at 938.377 kb on - strand, within CCNA_00859at 938.402 kb on + strand, within CCNA_00859at 938.404 kb on + strand, within CCNA_00859at 938.410 kb on - strand, within CCNA_00859at 938.416 kb on - strand, within CCNA_00859at 938.427 kb on + strand, within CCNA_00859at 938.428 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.435 kb on - strand, within CCNA_00859at 938.451 kb on + strand, within CCNA_00859at 938.507 kb on - strandat 938.508 kb on - strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.524 kb on + strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.532 kb on - strandat 938.569 kb on - strandat 938.615 kb on + strandat 938.623 kb on - strandat 938.696 kb on - strand, within CCNA_00860at 938.712 kb on + strand, within CCNA_00860at 938.738 kb on + strand, within CCNA_00860at 938.752 kb on - strand, within CCNA_00860at 938.757 kb on - strand, within CCNA_00860at 938.848 kb on + strandat 938.928 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.956 kb on - strandat 938.958 kb on + strandat 938.984 kb on - strandat 938.984 kb on - strandat 938.993 kb on - strandat 938.996 kb on + strandat 939.006 kb on + strandat 939.006 kb on + strandat 939.032 kb on - strandat 939.075 kb on + strand, within CCNA_00861at 939.083 kb on - strand, within CCNA_00861at 939.110 kb on + strand, within CCNA_00861at 939.118 kb on - strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.124 kb on + strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.132 kb on - strand, within CCNA_00861at 939.171 kb on + strand, within CCNA_00861at 939.171 kb on + strandat 939.204 kb on + strand, within CCNA_00861at 939.212 kb on - strand, within CCNA_00861at 939.240 kb on + strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.248 kb on - strand, within CCNA_00861at 939.282 kb on + strand, within CCNA_00861at 939.309 kb on - strand, within CCNA_00861at 939.323 kb on - strand, within CCNA_00861at 939.374 kb on + strand, within CCNA_00861at 939.396 kb on + strand, within CCNA_00861at 939.463 kb on + strand, within CCNA_00861at 939.465 kb on + strand, within CCNA_00861at 939.496 kb on - strand, within CCNA_00861at 939.509 kb on + strandat 939.509 kb on + strandat 939.517 kb on - strandat 939.573 kb on - strandat 939.685 kb on - strandat 939.758 kb on - strandat 939.766 kb on + strandat 939.774 kb on - strandat 939.779 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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937,627 + +2.3
937,708 - +0.9
937,778 + CCNA_00859 0.11 -0.0
937,805 + CCNA_00859 0.15 +1.7
937,841 - CCNA_00859 0.19 -1.0
937,842 + CCNA_00859 0.19 +1.3
937,861 - CCNA_00859 0.21 +1.1
937,884 + CCNA_00859 0.23 -1.1
937,900 - CCNA_00859 0.25 -0.3
937,935 + CCNA_00859 0.29 +0.0
937,935 + CCNA_00859 0.29 -0.6
937,936 + CCNA_00859 0.29 +0.4
937,943 - CCNA_00859 0.30 +0.6
937,969 + CCNA_00859 0.33 +0.4
937,969 + CCNA_00859 0.33 +0.9
937,969 + +1.7
938,009 + CCNA_00859 0.38 +1.4
938,047 + CCNA_00859 0.42 +3.7
938,053 - CCNA_00859 0.42 -1.1
938,055 - CCNA_00859 0.43 +1.3
938,089 + CCNA_00859 0.47 -0.8
938,115 + CCNA_00859 0.49 -0.3
938,123 - CCNA_00859 0.50 -0.1
938,192 + CCNA_00859 0.58 -0.0
938,197 + CCNA_00859 0.59 -1.8
938,197 + CCNA_00859 0.59 +0.1
938,200 - CCNA_00859 0.59 -2.0
938,220 + CCNA_00859 0.61 -0.3
938,264 + CCNA_00859 0.66 -0.6
938,264 + CCNA_00859 0.66 -0.1
938,264 + CCNA_00859 0.66 -0.6
938,264 + CCNA_00859 0.66 +0.5
938,272 - CCNA_00859 0.67 +1.7
938,272 - CCNA_00859 0.67 +1.1
938,272 - CCNA_00859 0.67 -0.7
938,287 - CCNA_00859 0.69 +0.8
938,294 + CCNA_00859 0.70 -0.5
938,301 + CCNA_00859 0.70 -1.3
938,301 - CCNA_00859 0.70 +0.5
938,309 - CCNA_00859 0.71 -0.6
938,311 + CCNA_00859 0.72 -2.1
938,330 + CCNA_00859 0.74 -0.6
938,330 + CCNA_00859 0.74 -2.1
938,340 + CCNA_00859 0.75 -2.2
938,345 - CCNA_00859 0.75 -0.0
938,348 - CCNA_00859 0.76 +0.1
938,348 - CCNA_00859 0.76 -0.1
938,355 - CCNA_00859 0.76 -0.3
938,377 - CCNA_00859 0.79 -2.2
938,402 + CCNA_00859 0.82 +0.1
938,404 + CCNA_00859 0.82 -1.3
938,410 - CCNA_00859 0.83 +0.4
938,416 - CCNA_00859 0.83 +0.1
938,427 + CCNA_00859 0.85 -1.2
938,428 - CCNA_00859 0.85 +0.7
938,435 - CCNA_00859 0.85 -0.6
938,435 - CCNA_00859 0.85 -0.7
938,435 - CCNA_00859 0.85 -0.1
938,435 - CCNA_00859 0.85 -0.4
938,451 + CCNA_00859 0.87 +0.1
938,507 - +0.1
938,508 - +0.3
938,524 + +1.7
938,524 + +0.4
938,524 + +0.1
938,524 + -0.5
938,524 + +0.7
938,532 - +0.1
938,532 - +1.1
938,532 - -0.3
938,532 - +1.4
938,569 - -1.0
938,615 + +1.7
938,623 - -0.5
938,696 - CCNA_00860 0.32 +2.2
938,712 + CCNA_00860 0.39 -0.9
938,738 + CCNA_00860 0.50 +1.7
938,752 - CCNA_00860 0.56 +0.3
938,757 - CCNA_00860 0.58 +1.8
938,848 + +0.4
938,928 + +1.5
938,948 + -1.1
938,948 + -1.0
938,956 - +1.1
938,958 + +0.4
938,984 - -0.3
938,984 - -0.5
938,993 - -1.9
938,996 + +1.1
939,006 + -2.3
939,006 + -0.1
939,032 - -1.7
939,075 + CCNA_00861 0.17 -1.4
939,083 - CCNA_00861 0.18 +0.3
939,110 + CCNA_00861 0.23 -0.3
939,118 - CCNA_00861 0.24 +0.7
939,124 + CCNA_00861 0.25 -1.0
939,124 + CCNA_00861 0.25 +0.1
939,124 + CCNA_00861 0.25 -1.0
939,124 + CCNA_00861 0.25 -0.5
939,132 - CCNA_00861 0.26 -0.4
939,132 - CCNA_00861 0.26 -0.6
939,132 - CCNA_00861 0.26 -0.3
939,171 + CCNA_00861 0.33 +1.1
939,171 + +0.7
939,204 + CCNA_00861 0.39 -0.6
939,212 - CCNA_00861 0.40 +1.7
939,240 + CCNA_00861 0.45 -0.5
939,248 - CCNA_00861 0.46 -0.1
939,248 - CCNA_00861 0.46 -0.4
939,248 - CCNA_00861 0.46 -0.7
939,248 - CCNA_00861 0.46 +1.7
939,282 + CCNA_00861 0.52 +0.7
939,309 - CCNA_00861 0.57 -0.1
939,323 - CCNA_00861 0.59 -0.1
939,374 + CCNA_00861 0.68 +0.5
939,396 + CCNA_00861 0.72 -1.4
939,463 + CCNA_00861 0.84 -0.8
939,465 + CCNA_00861 0.84 +0.7
939,496 - CCNA_00861 0.89 -0.9
939,509 + +2.7
939,509 + -1.1
939,517 - -0.5
939,573 - -0.9
939,685 - +0.7
939,758 - +0.7
939,766 + +3.3
939,774 - +1.9
939,779 - +2.7

Or see this region's nucleotide sequence