Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00834

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00833 and CCNA_03942 are separated by 136 nucleotidesCCNA_03942 and CCNA_00834 are separated by 171 nucleotidesCCNA_00834 and CCNA_00835 are separated by 550 nucleotides CCNA_00833: CCNA_00833 - NAD(P)H:quinone oxidoreductase, at 898,620 to 899,219 _00833 CCNA_03942: CCNA_03942 - hypothetical protein, at 899,356 to 899,490 _03942 CCNA_00834: CCNA_00834 - flagellin FljM, at 899,662 to 900,483 _00834 CCNA_00835: CCNA_00835 - flagellin FljN, at 901,034 to 901,855 _00835 Position (kb) 899 900 901Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 898.668 kb on - strandat 898.668 kb on - strandat 898.668 kb on - strandat 898.669 kb on - strandat 898.669 kb on - strandat 898.682 kb on - strand, within CCNA_00833at 898.721 kb on + strand, within CCNA_00833at 898.733 kb on + strand, within CCNA_00833at 898.742 kb on - strand, within CCNA_00833at 898.742 kb on - strand, within CCNA_00833at 898.772 kb on + strand, within CCNA_00833at 898.772 kb on + strand, within CCNA_00833at 898.772 kb on + strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.780 kb on - strand, within CCNA_00833at 898.814 kb on - strand, within CCNA_00833at 898.814 kb on - strand, within CCNA_00833at 898.906 kb on + strand, within CCNA_00833at 898.941 kb on - strand, within CCNA_00833at 898.963 kb on + strand, within CCNA_00833at 898.971 kb on - strand, within CCNA_00833at 898.994 kb on + strand, within CCNA_00833at 899.061 kb on + strand, within CCNA_00833at 899.079 kb on - strand, within CCNA_00833at 899.139 kb on - strand, within CCNA_00833at 899.144 kb on - strand, within CCNA_00833at 899.213 kb on - strandat 899.216 kb on - strandat 899.262 kb on - strandat 899.361 kb on - strandat 899.361 kb on - strandat 899.376 kb on - strand, within CCNA_03942at 899.392 kb on - strand, within CCNA_03942at 899.420 kb on + strand, within CCNA_03942at 899.428 kb on - strand, within CCNA_03942at 899.629 kb on + strandat 899.639 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.665 kb on + strandat 899.673 kb on - strandat 899.673 kb on - strandat 899.673 kb on - strandat 899.675 kb on + strandat 899.678 kb on - strandat 899.683 kb on - strandat 899.737 kb on - strandat 899.752 kb on - strand, within CCNA_00834at 899.755 kb on + strand, within CCNA_00834at 899.978 kb on + strand, within CCNA_00834at 899.988 kb on + strand, within CCNA_00834at 900.007 kb on + strand, within CCNA_00834at 900.059 kb on - strand, within CCNA_00834at 900.065 kb on - strand, within CCNA_00834at 900.065 kb on - strand, within CCNA_00834at 900.089 kb on + strand, within CCNA_00834at 900.089 kb on + strand, within CCNA_00834at 900.127 kb on + strand, within CCNA_00834at 900.147 kb on + strand, within CCNA_00834at 900.148 kb on + strand, within CCNA_00834at 900.150 kb on - strand, within CCNA_00834at 900.155 kb on - strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.156 kb on - strand, within CCNA_00834at 900.236 kb on - strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.322 kb on + strand, within CCNA_00834at 900.332 kb on + strand, within CCNA_00834at 900.332 kb on + strand, within CCNA_00834at 900.568 kb on - strandat 900.587 kb on - strandat 900.599 kb on - strandat 900.605 kb on - strandat 900.615 kb on + strandat 900.623 kb on - strandat 900.625 kb on - strandat 900.648 kb on - strandat 900.664 kb on + strandat 900.682 kb on + strandat 900.682 kb on + strandat 900.682 kb on + strandat 900.682 kb on + strandat 900.687 kb on + strandat 900.687 kb on + strandat 900.688 kb on + strandat 900.690 kb on - strandat 900.690 kb on - strandat 900.690 kb on - strandat 900.695 kb on - strandat 900.695 kb on - strandat 900.695 kb on - strandat 900.704 kb on + strandat 900.733 kb on + strandat 900.751 kb on - strandat 900.762 kb on + strandat 900.770 kb on - strandat 900.785 kb on - strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.790 kb on + strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.798 kb on - strandat 900.811 kb on + strandat 900.819 kb on - strandat 900.851 kb on - strandat 900.990 kb on - strandat 901.012 kb on + strandat 901.012 kb on + strandat 901.013 kb on + strandat 901.020 kb on - strandat 901.020 kb on - strandat 901.037 kb on + strandat 901.045 kb on - strandat 901.045 kb on - strandat 901.045 kb on - strandat 901.109 kb on - strandat 901.114 kb on - strandat 901.124 kb on - strand, within CCNA_00835at 901.124 kb on - strand, within CCNA_00835at 901.162 kb on + strand, within CCNA_00835at 901.162 kb on + strand, within CCNA_00835at 901.162 kb on + strand, within CCNA_00835at 901.360 kb on + strand, within CCNA_00835at 901.360 kb on + strand, within CCNA_00835at 901.405 kb on + strand, within CCNA_00835at 901.410 kb on - strand, within CCNA_00835at 901.424 kb on + strand, within CCNA_00835at 901.461 kb on + strand, within CCNA_00835

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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898,668 - -1.7
898,668 - +1.2
898,668 - -0.2
898,669 - -0.2
898,669 - -0.7
898,682 - CCNA_00833 0.10 +0.8
898,721 + CCNA_00833 0.17 -0.6
898,733 + CCNA_00833 0.19 -0.1
898,742 - CCNA_00833 0.20 +0.6
898,742 - CCNA_00833 0.20 +0.8
898,772 + CCNA_00833 0.25 -0.1
898,772 + CCNA_00833 0.25 -0.1
898,772 + CCNA_00833 0.25 +1.8
898,780 - CCNA_00833 0.27 -0.4
898,780 - CCNA_00833 0.27 -1.3
898,780 - CCNA_00833 0.27 +1.2
898,780 - CCNA_00833 0.27 +0.8
898,814 - CCNA_00833 0.32 -1.1
898,814 - CCNA_00833 0.32 +2.8
898,906 + CCNA_00833 0.48 -1.7
898,941 - CCNA_00833 0.54 +0.8
898,963 + CCNA_00833 0.57 +2.2
898,971 - CCNA_00833 0.58 +1.2
898,994 + CCNA_00833 0.62 -0.6
899,061 + CCNA_00833 0.73 +0.4
899,079 - CCNA_00833 0.77 -0.2
899,139 - CCNA_00833 0.86 +0.8
899,144 - CCNA_00833 0.87 -0.8
899,213 - +0.8
899,216 - -0.1
899,262 - -1.1
899,361 - +1.2
899,361 - -0.9
899,376 - CCNA_03942 0.15 -0.2
899,392 - CCNA_03942 0.27 +0.4
899,420 + CCNA_03942 0.47 -1.1
899,428 - CCNA_03942 0.53 +0.4
899,629 + +0.4
899,639 + -1.2
899,665 + +2.2
899,665 + +2.8
899,665 + +0.0
899,665 + -0.1
899,673 - -0.4
899,673 - +0.2
899,673 - +0.8
899,675 + +0.8
899,678 - +0.8
899,683 - +1.2
899,737 - -0.8
899,752 - CCNA_00834 0.11 +1.3
899,755 + CCNA_00834 0.11 +0.2
899,978 + CCNA_00834 0.38 +1.3
899,988 + CCNA_00834 0.40 +1.2
900,007 + CCNA_00834 0.42 +2.7
900,059 - CCNA_00834 0.48 -0.2
900,065 - CCNA_00834 0.49 -0.2
900,065 - CCNA_00834 0.49 -1.2
900,089 + CCNA_00834 0.52 +2.1
900,089 + CCNA_00834 0.52 +2.4
900,127 + CCNA_00834 0.57 +3.4
900,147 + CCNA_00834 0.59 +3.2
900,148 + CCNA_00834 0.59 +3.6
900,150 - CCNA_00834 0.59 -1.3
900,155 - CCNA_00834 0.60 +1.4
900,156 - CCNA_00834 0.60 -0.7
900,156 - CCNA_00834 0.60 -1.2
900,156 - CCNA_00834 0.60 -0.6
900,236 - CCNA_00834 0.70 -0.4
900,322 + CCNA_00834 0.80 +3.7
900,322 + CCNA_00834 0.80 +3.3
900,322 + CCNA_00834 0.80 +3.7
900,322 + CCNA_00834 0.80 +4.1
900,322 + CCNA_00834 0.80 +3.6
900,322 + CCNA_00834 0.80 +3.1
900,322 + CCNA_00834 0.80 +3.7
900,322 + CCNA_00834 0.80 +3.8
900,322 + CCNA_00834 0.80 +3.5
900,332 + CCNA_00834 0.82 +3.9
900,332 + CCNA_00834 0.82 +4.0
900,568 - -0.6
900,587 - +1.8
900,599 - +2.8
900,605 - -2.2
900,615 + -0.1
900,623 - +1.2
900,625 - -0.8
900,648 - -2.5
900,664 + +2.2
900,682 + -0.7
900,682 + -1.5
900,682 + -0.9
900,682 + +0.8
900,687 + +0.8
900,687 + -1.1
900,688 + -0.2
900,690 - +1.5
900,690 - -1.6
900,690 - -2.0
900,695 - -1.2
900,695 - +0.2
900,695 - +1.2
900,704 + +2.8
900,733 + -0.2
900,751 - +3.1
900,762 + -0.6
900,770 - +1.1
900,785 - +0.8
900,790 + -0.7
900,790 + -0.3
900,790 + -1.0
900,790 + +0.1
900,790 + -1.0
900,790 + -0.3
900,790 + -1.2
900,790 + -1.5
900,790 + +1.1
900,798 - -1.1
900,798 - -2.3
900,798 - +0.1
900,798 - -0.8
900,798 - +0.1
900,798 - +0.1
900,811 + +1.7
900,819 - -0.3
900,851 - +0.1
900,990 - +1.1
901,012 + -0.3
901,012 + -0.4
901,013 + +2.0
901,020 - -1.7
901,020 - +2.7
901,037 + +1.1
901,045 - +0.1
901,045 - +0.1
901,045 - -0.6
901,109 - +0.4
901,114 - +1.5
901,124 - CCNA_00835 0.11 +0.4
901,124 - CCNA_00835 0.11 -1.4
901,162 + CCNA_00835 0.16 -0.5
901,162 + CCNA_00835 0.16 +0.4
901,162 + CCNA_00835 0.16 -0.1
901,360 + CCNA_00835 0.40 +0.1
901,360 + CCNA_00835 0.40 +1.6
901,405 + CCNA_00835 0.45 -0.6
901,410 - CCNA_00835 0.46 -1.0
901,424 + CCNA_00835 0.47 +1.0
901,461 + CCNA_00835 0.52 +0.1

Or see this region's nucleotide sequence