Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00698

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00696 and CCNA_00698 are separated by 513 nucleotidesCCNA_00698 and CCNA_00699 are separated by 265 nucleotides CCNA_00696: CCNA_00696 - O6-methylguanine-DNA methyltransferase, at 756,229 to 756,804 _00696 CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815 _00698 CCNA_00699: CCNA_00699 - LSU ribosomal protein L28P, at 758,081 to 758,380 _00699 Position (kb) 757 758Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 756.318 kb on + strand, within CCNA_00696at 756.323 kb on - strand, within CCNA_00696at 756.326 kb on - strand, within CCNA_00696at 756.329 kb on + strand, within CCNA_00696at 756.337 kb on - strand, within CCNA_00696at 756.344 kb on + strand, within CCNA_00696at 756.363 kb on + strand, within CCNA_00696at 756.371 kb on + strand, within CCNA_00696at 756.371 kb on - strand, within CCNA_00696at 756.376 kb on + strand, within CCNA_00696at 756.384 kb on - strand, within CCNA_00696at 756.432 kb on + strand, within CCNA_00696at 756.451 kb on + strand, within CCNA_00696at 756.456 kb on + strand, within CCNA_00696at 756.471 kb on + strand, within CCNA_00696at 756.471 kb on + strand, within CCNA_00696at 756.491 kb on + strand, within CCNA_00696at 756.505 kb on - strand, within CCNA_00696at 756.519 kb on - strand, within CCNA_00696at 756.522 kb on + strand, within CCNA_00696at 756.524 kb on - strand, within CCNA_00696at 756.541 kb on + strand, within CCNA_00696at 756.541 kb on + strand, within CCNA_00696at 756.541 kb on + strand, within CCNA_00696at 756.547 kb on + strand, within CCNA_00696at 756.551 kb on + strand, within CCNA_00696at 756.571 kb on - strand, within CCNA_00696at 756.652 kb on - strand, within CCNA_00696at 756.671 kb on + strand, within CCNA_00696at 756.700 kb on + strand, within CCNA_00696at 756.708 kb on - strand, within CCNA_00696at 756.728 kb on - strand, within CCNA_00696at 756.741 kb on + strand, within CCNA_00696at 756.741 kb on + strand, within CCNA_00696at 756.741 kb on + strand, within CCNA_00696at 756.741 kb on + strand, within CCNA_00696at 756.749 kb on - strandat 756.749 kb on - strandat 756.749 kb on - strandat 756.766 kb on + strandat 756.770 kb on - strandat 756.774 kb on - strandat 756.806 kb on + strandat 756.813 kb on + strandat 756.813 kb on + strandat 756.821 kb on - strandat 756.821 kb on - strandat 756.828 kb on - strandat 756.828 kb on - strandat 756.833 kb on + strandat 756.841 kb on - strandat 756.872 kb on - strandat 756.872 kb on - strandat 756.872 kb on - strandat 756.872 kb on - strandat 756.872 kb on - strandat 756.874 kb on - strandat 757.023 kb on + strandat 757.023 kb on + strandat 757.025 kb on + strandat 757.052 kb on + strandat 757.052 kb on + strandat 757.060 kb on - strandat 757.071 kb on - strandat 757.091 kb on + strandat 757.092 kb on - strandat 757.148 kb on - strandat 757.376 kb on + strand, within CCNA_00698at 757.376 kb on + strand, within CCNA_00698at 757.376 kb on + strand, within CCNA_00698at 757.376 kb on + strand, within CCNA_00698at 757.384 kb on - strand, within CCNA_00698at 757.403 kb on + strand, within CCNA_00698at 757.437 kb on - strand, within CCNA_00698at 757.442 kb on + strand, within CCNA_00698at 757.449 kb on + strand, within CCNA_00698at 757.467 kb on - strand, within CCNA_00698at 757.467 kb on - strand, within CCNA_00698at 757.476 kb on + strand, within CCNA_00698at 757.515 kb on - strand, within CCNA_00698at 757.516 kb on + strand, within CCNA_00698at 757.524 kb on - strand, within CCNA_00698at 757.527 kb on + strand, within CCNA_00698at 757.552 kb on - strand, within CCNA_00698at 757.566 kb on - strand, within CCNA_00698at 757.571 kb on + strand, within CCNA_00698at 757.571 kb on + strand, within CCNA_00698at 757.579 kb on - strand, within CCNA_00698at 757.587 kb on - strand, within CCNA_00698at 757.596 kb on + strand, within CCNA_00698at 757.596 kb on + strand, within CCNA_00698at 757.626 kb on + strand, within CCNA_00698at 757.645 kb on + strand, within CCNA_00698at 757.653 kb on - strandat 757.663 kb on + strand, within CCNA_00698at 757.724 kb on + strand, within CCNA_00698at 757.732 kb on - strand, within CCNA_00698at 757.736 kb on + strand, within CCNA_00698at 757.746 kb on + strand, within CCNA_00698at 757.754 kb on - strandat 757.780 kb on + strandat 757.780 kb on + strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.788 kb on - strandat 757.826 kb on + strandat 757.830 kb on - strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.838 kb on + strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.846 kb on - strandat 757.866 kb on + strandat 757.875 kb on - strandat 757.885 kb on - strandat 757.889 kb on - strandat 757.923 kb on + strandat 757.932 kb on - strandat 757.932 kb on - strandat 757.937 kb on - strandat 757.939 kb on + strandat 757.947 kb on - strandat 758.341 kb on + strand, within CCNA_00699at 758.341 kb on + strand, within CCNA_00699at 758.353 kb on + strandat 758.353 kb on + strandat 758.375 kb on + strandat 758.525 kb on + strandat 758.541 kb on - strandat 758.541 kb on - strandat 758.567 kb on - strandat 758.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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756,318 + CCNA_00696 0.15 +2.6
756,323 - CCNA_00696 0.16 +1.7
756,326 - CCNA_00696 0.17 -0.5
756,329 + CCNA_00696 0.17 -1.1
756,337 - CCNA_00696 0.19 +3.0
756,344 + CCNA_00696 0.20 -0.9
756,363 + CCNA_00696 0.23 -0.7
756,371 + CCNA_00696 0.25 +1.7
756,371 - CCNA_00696 0.25 -1.2
756,376 + CCNA_00696 0.26 +0.1
756,384 - CCNA_00696 0.27 -1.4
756,432 + CCNA_00696 0.35 -0.2
756,451 + CCNA_00696 0.39 -0.9
756,456 + CCNA_00696 0.39 -0.4
756,471 + CCNA_00696 0.42 -0.3
756,471 + CCNA_00696 0.42 +0.7
756,491 + CCNA_00696 0.45 +0.6
756,505 - CCNA_00696 0.48 +1.4
756,519 - CCNA_00696 0.50 +1.4
756,522 + CCNA_00696 0.51 -0.5
756,524 - CCNA_00696 0.51 -0.6
756,541 + CCNA_00696 0.54 -2.0
756,541 + CCNA_00696 0.54 -0.3
756,541 + CCNA_00696 0.54 -0.2
756,547 + CCNA_00696 0.55 -0.6
756,551 + CCNA_00696 0.56 +0.9
756,571 - CCNA_00696 0.59 +3.4
756,652 - CCNA_00696 0.73 -1.0
756,671 + CCNA_00696 0.77 +0.1
756,700 + CCNA_00696 0.82 -0.4
756,708 - CCNA_00696 0.83 -0.6
756,728 - CCNA_00696 0.87 -1.0
756,741 + CCNA_00696 0.89 -1.3
756,741 + CCNA_00696 0.89 -0.5
756,741 + CCNA_00696 0.89 +0.9
756,741 + CCNA_00696 0.89 +0.2
756,749 - -1.3
756,749 - -0.2
756,749 - -0.3
756,766 + +2.2
756,770 - -0.3
756,774 - +0.4
756,806 + -1.6
756,813 + +1.4
756,813 + +2.0
756,821 - -1.0
756,821 - +1.0
756,828 - -1.4
756,828 - +1.7
756,833 + -0.6
756,841 - +2.0
756,872 - +1.4
756,872 - +2.0
756,872 - +0.7
756,872 - +1.4
756,872 - +1.0
756,874 - +2.0
757,023 + -2.2
757,023 + +0.2
757,025 + -0.0
757,052 + +2.0
757,052 + -0.2
757,060 - +0.5
757,071 - +0.7
757,091 + -0.4
757,092 - -0.3
757,148 - +0.5
757,376 + CCNA_00698 0.12 -0.7
757,376 + CCNA_00698 0.12 -1.9
757,376 + CCNA_00698 0.12 -0.8
757,376 + CCNA_00698 0.12 +1.0
757,384 - CCNA_00698 0.13 -1.6
757,403 + CCNA_00698 0.17 +0.5
757,437 - CCNA_00698 0.24 +1.0
757,442 + CCNA_00698 0.25 -1.4
757,449 + CCNA_00698 0.26 +1.0
757,467 - CCNA_00698 0.30 -2.1
757,467 - CCNA_00698 0.30 -2.0
757,476 + CCNA_00698 0.32 +1.4
757,515 - CCNA_00698 0.40 -1.9
757,516 + CCNA_00698 0.40 -0.3
757,524 - CCNA_00698 0.41 -1.3
757,527 + CCNA_00698 0.42 -1.0
757,552 - CCNA_00698 0.47 -0.6
757,566 - CCNA_00698 0.50 -0.5
757,571 + CCNA_00698 0.51 +1.4
757,571 + CCNA_00698 0.51 -2.6
757,579 - CCNA_00698 0.52 +2.0
757,587 - CCNA_00698 0.54 -0.0
757,596 + CCNA_00698 0.56 +1.4
757,596 + CCNA_00698 0.56 -0.8
757,626 + CCNA_00698 0.62 +3.0
757,645 + CCNA_00698 0.66 +1.7
757,653 - +3.0
757,663 + CCNA_00698 0.69 -1.1
757,724 + CCNA_00698 0.82 -0.7
757,732 - CCNA_00698 0.83 -0.2
757,736 + CCNA_00698 0.84 +3.0
757,746 + CCNA_00698 0.86 +1.4
757,754 - +1.4
757,780 + -0.2
757,780 + +0.7
757,788 - +2.0
757,788 - -0.3
757,788 - -0.3
757,788 - -0.3
757,788 - -0.9
757,788 - -0.2
757,788 - -0.2
757,788 - -1.2
757,788 - +2.0
757,826 + +0.2
757,830 - -0.3
757,838 + -2.0
757,838 + +0.4
757,838 + +1.0
757,838 + -0.8
757,838 + -1.4
757,838 + +2.0
757,846 - +3.0
757,846 - -0.6
757,846 - -0.2
757,866 + +1.6
757,875 - -2.2
757,885 - -0.5
757,889 - -0.2
757,923 + +0.4
757,932 - +0.4
757,932 - -0.2
757,937 - -0.6
757,939 + +3.0
757,947 - +0.7
758,341 + CCNA_00699 0.87 +4.7
758,341 + CCNA_00699 0.87 +4.5
758,353 + +3.5
758,353 + +4.2
758,375 + +5.2
758,525 + +0.9
758,541 - -1.2
758,541 - +3.0
758,567 - +0.7
758,601 - +0.6

Or see this region's nucleotide sequence