Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00666

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00665 and CCNA_00666 overlap by 4 nucleotidesCCNA_00666 and CCNA_00667 are separated by 61 nucleotides CCNA_00665: CCNA_00665 - GAF-family sensor histidine kinase, at 721,949 to 723,094 _00665 CCNA_00666: CCNA_00666 - response regulator receiver domain protein, at 723,091 to 723,444 _00666 CCNA_00667: CCNA_00667 - lipopolysaccharide biosynthesis protein, at 723,506 to 724,690 _00667 Position (kb) 723 724Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 722.129 kb on + strand, within CCNA_00665at 722.132 kb on - strand, within CCNA_00665at 722.134 kb on + strand, within CCNA_00665at 722.170 kb on - strand, within CCNA_00665at 722.176 kb on + strand, within CCNA_00665at 722.177 kb on + strand, within CCNA_00665at 722.200 kb on + strandat 722.208 kb on - strand, within CCNA_00665at 722.208 kb on - strand, within CCNA_00665at 722.244 kb on + strand, within CCNA_00665at 722.244 kb on + strand, within CCNA_00665at 722.252 kb on - strand, within CCNA_00665at 722.252 kb on - strand, within CCNA_00665at 722.272 kb on + strand, within CCNA_00665at 722.295 kb on + strand, within CCNA_00665at 722.359 kb on + strand, within CCNA_00665at 722.406 kb on - strand, within CCNA_00665at 722.407 kb on + strand, within CCNA_00665at 722.407 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.435 kb on + strand, within CCNA_00665at 722.437 kb on - strand, within CCNA_00665at 722.437 kb on - strand, within CCNA_00665at 722.437 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.443 kb on - strand, within CCNA_00665at 722.475 kb on + strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.513 kb on - strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.556 kb on + strand, within CCNA_00665at 722.574 kb on - strand, within CCNA_00665at 722.600 kb on - strandat 722.618 kb on - strand, within CCNA_00665at 722.618 kb on - strand, within CCNA_00665at 722.633 kb on + strand, within CCNA_00665at 722.659 kb on + strand, within CCNA_00665at 722.682 kb on + strand, within CCNA_00665at 722.699 kb on + strand, within CCNA_00665at 722.738 kb on + strand, within CCNA_00665at 722.745 kb on - strand, within CCNA_00665at 722.785 kb on + strand, within CCNA_00665at 722.791 kb on - strand, within CCNA_00665at 722.796 kb on + strand, within CCNA_00665at 722.841 kb on - strand, within CCNA_00665at 722.841 kb on - strand, within CCNA_00665at 722.843 kb on + strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.851 kb on - strand, within CCNA_00665at 722.881 kb on + strand, within CCNA_00665at 722.903 kb on + strand, within CCNA_00665at 722.918 kb on + strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.923 kb on + strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.931 kb on - strand, within CCNA_00665at 722.936 kb on - strand, within CCNA_00665at 722.961 kb on + strand, within CCNA_00665at 722.967 kb on + strand, within CCNA_00665at 722.967 kb on + strand, within CCNA_00665at 723.019 kb on + strandat 723.019 kb on + strandat 723.025 kb on - strandat 723.041 kb on - strandat 723.090 kb on + strandat 723.090 kb on + strandat 723.098 kb on - strandat 723.134 kb on - strand, within CCNA_00666at 723.144 kb on + strand, within CCNA_00666at 723.145 kb on + strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.153 kb on - strand, within CCNA_00666at 723.163 kb on + strand, within CCNA_00666at 723.163 kb on + strand, within CCNA_00666at 723.169 kb on - strand, within CCNA_00666at 723.170 kb on + strand, within CCNA_00666at 723.173 kb on - strand, within CCNA_00666at 723.178 kb on - strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.208 kb on + strand, within CCNA_00666at 723.211 kb on - strand, within CCNA_00666at 723.216 kb on - strand, within CCNA_00666at 723.235 kb on - strand, within CCNA_00666at 723.250 kb on + strand, within CCNA_00666at 723.258 kb on + strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.258 kb on - strand, within CCNA_00666at 723.293 kb on + strand, within CCNA_00666at 723.327 kb on - strand, within CCNA_00666at 723.361 kb on + strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.369 kb on - strand, within CCNA_00666at 723.381 kb on - strand, within CCNA_00666at 723.384 kb on + strand, within CCNA_00666at 723.411 kb on + strandat 723.419 kb on - strandat 723.466 kb on - strandat 723.476 kb on - strandat 723.478 kb on + strandat 723.486 kb on - strandat 723.486 kb on - strandat 723.584 kb on + strandat 723.631 kb on - strand, within CCNA_00667at 723.635 kb on - strand, within CCNA_00667at 723.635 kb on - strand, within CCNA_00667at 723.671 kb on + strand, within CCNA_00667at 723.691 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.755 kb on - strand, within CCNA_00667at 723.768 kb on + strand, within CCNA_00667at 723.781 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.788 kb on - strand, within CCNA_00667at 723.792 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.797 kb on + strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.805 kb on - strand, within CCNA_00667at 723.879 kb on - strand, within CCNA_00667at 723.889 kb on + strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.897 kb on - strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.950 kb on + strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.958 kb on - strand, within CCNA_00667at 723.994 kb on - strand, within CCNA_00667at 724.016 kb on + strand, within CCNA_00667at 724.035 kb on + strand, within CCNA_00667at 724.126 kb on + strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.134 kb on - strand, within CCNA_00667at 724.150 kb on - strand, within CCNA_00667at 724.202 kb on - strand, within CCNA_00667at 724.231 kb on + strand, within CCNA_00667at 724.255 kb on + strand, within CCNA_00667at 724.255 kb on + strandat 724.255 kb on + strand, within CCNA_00667at 724.260 kb on + strand, within CCNA_00667at 724.268 kb on - strand, within CCNA_00667at 724.324 kb on - strand, within CCNA_00667at 724.381 kb on + strand, within CCNA_00667at 724.386 kb on - strand, within CCNA_00667at 724.427 kb on - strand, within CCNA_00667at 724.427 kb on - strand, within CCNA_00667at 724.432 kb on - strand, within CCNA_00667

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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722,129 + CCNA_00665 0.16 +0.1
722,132 - CCNA_00665 0.16 +0.1
722,134 + CCNA_00665 0.16 +0.6
722,170 - CCNA_00665 0.19 -0.9
722,176 + CCNA_00665 0.20 -0.9
722,177 + CCNA_00665 0.20 +0.2
722,200 + +2.4
722,208 - CCNA_00665 0.23 +0.1
722,208 - CCNA_00665 0.23 +0.6
722,244 + CCNA_00665 0.26 -0.9
722,244 + CCNA_00665 0.26 +1.4
722,252 - CCNA_00665 0.26 -1.4
722,252 - CCNA_00665 0.26 -1.0
722,272 + CCNA_00665 0.28 +0.7
722,295 + CCNA_00665 0.30 -1.0
722,359 + CCNA_00665 0.36 +0.4
722,406 - CCNA_00665 0.40 +1.0
722,407 + CCNA_00665 0.40 -0.0
722,407 + CCNA_00665 0.40 -0.6
722,435 + CCNA_00665 0.42 -1.0
722,435 + CCNA_00665 0.42 -0.6
722,435 + CCNA_00665 0.42 +1.2
722,435 + CCNA_00665 0.42 +0.4
722,435 + CCNA_00665 0.42 -1.2
722,435 + CCNA_00665 0.42 +0.6
722,437 - CCNA_00665 0.43 +0.4
722,437 - CCNA_00665 0.43 -0.2
722,437 - CCNA_00665 0.43 -0.2
722,443 - CCNA_00665 0.43 +4.0
722,443 - CCNA_00665 0.43 +0.4
722,443 - CCNA_00665 0.43 -1.0
722,475 + CCNA_00665 0.46 +0.5
722,513 - CCNA_00665 0.49 +1.0
722,513 - CCNA_00665 0.49 +1.0
722,513 - CCNA_00665 0.49 +2.0
722,556 + CCNA_00665 0.53 +0.6
722,556 + CCNA_00665 0.53 -0.1
722,574 - CCNA_00665 0.55 -1.0
722,600 - +1.4
722,618 - CCNA_00665 0.58 +0.4
722,618 - CCNA_00665 0.58 -1.7
722,633 + CCNA_00665 0.60 +1.4
722,659 + CCNA_00665 0.62 -0.6
722,682 + CCNA_00665 0.64 -0.3
722,699 + CCNA_00665 0.65 -0.5
722,738 + CCNA_00665 0.69 -1.4
722,745 - CCNA_00665 0.69 -0.6
722,785 + CCNA_00665 0.73 +0.2
722,791 - CCNA_00665 0.73 +1.2
722,796 + CCNA_00665 0.74 -1.8
722,841 - CCNA_00665 0.78 +2.0
722,841 - CCNA_00665 0.78 -0.0
722,843 + CCNA_00665 0.78 +2.6
722,851 - CCNA_00665 0.79 -0.2
722,851 - CCNA_00665 0.79 +3.0
722,851 - CCNA_00665 0.79 -0.9
722,881 + CCNA_00665 0.81 +1.4
722,903 + CCNA_00665 0.83 +2.0
722,918 + CCNA_00665 0.85 -0.6
722,923 + CCNA_00665 0.85 +0.1
722,923 + CCNA_00665 0.85 +0.6
722,931 - CCNA_00665 0.86 -2.1
722,931 - CCNA_00665 0.86 -1.2
722,936 - CCNA_00665 0.86 -0.8
722,961 + CCNA_00665 0.88 +1.2
722,967 + CCNA_00665 0.89 +1.6
722,967 + CCNA_00665 0.89 +0.9
723,019 + +0.4
723,019 + +3.4
723,025 - +0.4
723,041 - +0.2
723,090 + +1.2
723,090 + +0.4
723,098 - +2.0
723,134 - CCNA_00666 0.12 -1.0
723,144 + CCNA_00666 0.15 +1.4
723,145 + CCNA_00666 0.15 +0.3
723,153 - CCNA_00666 0.18 -0.0
723,153 - CCNA_00666 0.18 +0.4
723,153 - CCNA_00666 0.18 -0.7
723,163 + CCNA_00666 0.20 +0.1
723,163 + CCNA_00666 0.20 -0.2
723,169 - CCNA_00666 0.22 -1.2
723,170 + CCNA_00666 0.22 +3.0
723,173 - CCNA_00666 0.23 -0.6
723,178 - CCNA_00666 0.25 +1.0
723,208 + CCNA_00666 0.33 +0.3
723,208 + CCNA_00666 0.33 +0.1
723,211 - CCNA_00666 0.34 -0.4
723,216 - CCNA_00666 0.35 +1.4
723,235 - CCNA_00666 0.41 -1.0
723,250 + CCNA_00666 0.45 -0.0
723,258 + CCNA_00666 0.47 +1.3
723,258 - CCNA_00666 0.47 +3.7
723,258 - CCNA_00666 0.47 +3.6
723,258 - CCNA_00666 0.47 +4.0
723,293 + CCNA_00666 0.57 -0.0
723,327 - CCNA_00666 0.67 +1.4
723,361 + CCNA_00666 0.76 -0.4
723,369 - CCNA_00666 0.79 +0.6
723,369 - CCNA_00666 0.79 -0.0
723,369 - CCNA_00666 0.79 -0.5
723,369 - CCNA_00666 0.79 +1.0
723,381 - CCNA_00666 0.82 +3.0
723,384 + CCNA_00666 0.83 -1.0
723,411 + -1.4
723,419 - -0.0
723,466 - -0.0
723,476 - -0.4
723,478 + -1.4
723,486 - -0.5
723,486 - +0.7
723,584 + +2.0
723,631 - CCNA_00667 0.11 -1.1
723,635 - CCNA_00667 0.11 -0.4
723,635 - CCNA_00667 0.11 -0.0
723,671 + CCNA_00667 0.14 +1.4
723,691 - CCNA_00667 0.16 +0.1
723,755 - CCNA_00667 0.21 +0.1
723,755 - CCNA_00667 0.21 -0.2
723,768 + CCNA_00667 0.22 +1.0
723,781 - CCNA_00667 0.23 -1.0
723,788 - CCNA_00667 0.24 +2.0
723,788 - CCNA_00667 0.24 -1.0
723,792 + CCNA_00667 0.24 -0.0
723,797 + CCNA_00667 0.25 -0.9
723,797 + CCNA_00667 0.25 +0.1
723,805 - CCNA_00667 0.25 -0.2
723,805 - CCNA_00667 0.25 -1.0
723,805 - CCNA_00667 0.25 -0.4
723,879 - CCNA_00667 0.31 -0.4
723,889 + CCNA_00667 0.32 -0.6
723,897 - CCNA_00667 0.33 -1.4
723,897 - CCNA_00667 0.33 +1.7
723,950 + CCNA_00667 0.37 +2.0
723,950 + CCNA_00667 0.37 +2.0
723,950 + CCNA_00667 0.37 -0.6
723,958 - CCNA_00667 0.38 -0.0
723,958 - CCNA_00667 0.38 -0.2
723,958 - CCNA_00667 0.38 -1.4
723,994 - CCNA_00667 0.41 -0.5
724,016 + CCNA_00667 0.43 +2.0
724,035 + CCNA_00667 0.45 +0.8
724,126 + CCNA_00667 0.52 +3.0
724,134 - CCNA_00667 0.53 +3.0
724,134 - CCNA_00667 0.53 -0.6
724,150 - CCNA_00667 0.54 +0.2
724,202 - CCNA_00667 0.59 -2.3
724,231 + CCNA_00667 0.61 -0.4
724,255 + CCNA_00667 0.63 -1.6
724,255 + +2.0
724,255 + CCNA_00667 0.63 -0.6
724,260 + CCNA_00667 0.64 +1.4
724,268 - CCNA_00667 0.64 +1.1
724,324 - CCNA_00667 0.69 -1.4
724,381 + CCNA_00667 0.74 +0.4
724,386 - CCNA_00667 0.74 -0.2
724,427 - CCNA_00667 0.78 -0.0
724,427 - CCNA_00667 0.78 +2.0
724,432 - CCNA_00667 0.78 -0.7

Or see this region's nucleotide sequence