Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00641 and CCNA_00642 overlap by 31 nucleotides CCNA_00642 and CCNA_00643 are separated by 456 nucleotides CCNA_00643 and CCNA_00644 are separated by 510 nucleotides
CCNA_00641: CCNA_00641 - hypothetical protein, at 692,376 to 692,672
_00641
CCNA_00642: CCNA_00642 - hypothetical protein, at 692,642 to 692,899
_00642
CCNA_00643: CCNA_00643 - hypothetical protein, at 693,356 to 693,502
_00643
CCNA_00644: CCNA_00644 - hypothetical protein, at 694,013 to 695,422
_00644
Position (kb) 693
694 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 692.358 kb on - strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.368 kb on - strand at 692.368 kb on - strand at 692.389 kb on - strand at 692.389 kb on - strand at 692.402 kb on + strand at 692.405 kb on - strand at 692.451 kb on + strand, within CCNA_00641 at 692.463 kb on + strand, within CCNA_00641 at 692.484 kb on + strand, within CCNA_00641 at 692.496 kb on + strand, within CCNA_00641 at 692.501 kb on + strand, within CCNA_00641 at 692.503 kb on - strand, within CCNA_00641 at 692.504 kb on - strand, within CCNA_00641 at 692.512 kb on + strand, within CCNA_00641 at 692.515 kb on + strand, within CCNA_00641 at 692.521 kb on - strand, within CCNA_00641 at 692.535 kb on + strand, within CCNA_00641 at 692.547 kb on + strand, within CCNA_00641 at 692.555 kb on - strand, within CCNA_00641 at 692.568 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.612 kb on + strand, within CCNA_00641 at 692.625 kb on - strand, within CCNA_00641 at 692.669 kb on - strand at 692.691 kb on - strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.713 kb on + strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.793 kb on + strand, within CCNA_00642 at 692.801 kb on - strand, within CCNA_00642 at 692.822 kb on - strand, within CCNA_00642 at 692.827 kb on - strand, within CCNA_00642 at 692.834 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.869 kb on + strand, within CCNA_00642 at 692.875 kb on - strand at 692.929 kb on - strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.020 kb on - strand at 693.027 kb on - strand at 693.066 kb on - strand at 693.066 kb on - strand at 693.076 kb on + strand at 693.086 kb on + strand at 693.094 kb on - strand at 693.107 kb on + strand at 693.132 kb on + strand at 693.135 kb on - strand at 693.180 kb on + strand at 693.180 kb on + strand at 693.180 kb on + strand at 693.188 kb on - strand at 693.188 kb on - strand at 693.188 kb on - strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.215 kb on + strand at 693.227 kb on + strand at 693.230 kb on + strand at 693.233 kb on - strand at 693.239 kb on + strand at 693.239 kb on + strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.253 kb on + strand at 693.279 kb on + strand at 693.294 kb on + strand at 693.306 kb on + strand at 693.306 kb on + strand at 693.306 kb on + strand at 693.311 kb on + strand at 693.311 kb on + strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.332 kb on - strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.356 kb on - strand at 693.395 kb on - strand, within CCNA_00643 at 693.412 kb on + strand, within CCNA_00643 at 693.412 kb on + strand, within CCNA_00643 at 693.417 kb on + strand, within CCNA_00643 at 693.420 kb on - strand, within CCNA_00643 at 693.465 kb on + strand, within CCNA_00643 at 693.476 kb on + strand, within CCNA_00643 at 693.476 kb on + strand, within CCNA_00643 at 693.484 kb on - strand, within CCNA_00643 at 693.495 kb on + strand at 693.546 kb on - strand at 693.579 kb on + strand at 693.580 kb on + strand at 693.580 kb on + strand at 693.589 kb on - strand at 693.648 kb on + strand at 693.680 kb on + strand at 693.681 kb on + strand at 693.729 kb on - strand at 693.744 kb on + strand at 693.744 kb on + strand at 693.747 kb on - strand at 693.757 kb on - strand at 693.783 kb on - strand at 693.808 kb on + strand at 693.848 kb on + strand at 693.856 kb on + strand at 693.858 kb on + strand at 693.858 kb on + strand at 693.890 kb on + strand at 693.913 kb on + strand at 693.913 kb on + strand at 693.921 kb on - strand at 693.931 kb on + strand at 693.931 kb on + strand at 693.931 kb on + strand at 693.939 kb on - strand at 694.034 kb on - strand at 694.048 kb on + strand at 694.049 kb on + strand at 694.069 kb on + strand at 694.069 kb on + strand at 694.069 kb on + strand at 694.077 kb on - strand at 694.090 kb on + strand at 694.094 kb on + strand at 694.177 kb on + strand, within CCNA_00644 at 694.177 kb on + strand, within CCNA_00644 at 694.185 kb on - strand, within CCNA_00644 at 694.185 kb on - strand, within CCNA_00644 at 694.193 kb on + strand, within CCNA_00644 at 694.233 kb on - strand, within CCNA_00644 at 694.245 kb on + strand, within CCNA_00644 at 694.245 kb on + strand, within CCNA_00644 at 694.261 kb on - strand, within CCNA_00644 at 694.264 kb on + strand, within CCNA_00644 at 694.268 kb on - strand, within CCNA_00644 at 694.272 kb on + strand, within CCNA_00644 at 694.282 kb on + strand, within CCNA_00644 at 694.285 kb on - strand, within CCNA_00644 at 694.285 kb on - strand, within CCNA_00644 at 694.298 kb on - strand, within CCNA_00644 at 694.323 kb on - strand, within CCNA_00644 at 694.349 kb on - strand, within CCNA_00644 at 694.357 kb on + strand, within CCNA_00644 at 694.357 kb on + strand, within CCNA_00644 at 694.357 kb on + strand, within CCNA_00644 at 694.365 kb on - strand, within CCNA_00644 at 694.365 kb on - strand, within CCNA_00644 at 694.386 kb on - strand, within CCNA_00644 at 694.407 kb on + strand, within CCNA_00644 at 694.415 kb on - strand, within CCNA_00644 at 694.422 kb on - strand, within CCNA_00644 at 694.422 kb on - strand, within CCNA_00644 at 694.438 kb on - strand, within CCNA_00644 at 694.459 kb on - strand, within CCNA_00644 at 694.501 kb on - strand, within CCNA_00644 at 694.502 kb on - strand, within CCNA_00644
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 692,358 - -1.0 692,360 + +0.9 692,360 + +2.9 692,360 + -0.2 692,368 - -0.6 692,368 - -0.6 692,389 - -0.5 692,389 - +0.6 692,402 + +1.4 692,405 - +3.3 692,451 + CCNA_00641 0.25 -0.1 692,463 + CCNA_00641 0.29 -0.2 692,484 + CCNA_00641 0.36 +0.9 692,496 + CCNA_00641 0.40 +0.4 692,501 + CCNA_00641 0.42 +1.4 692,503 - CCNA_00641 0.43 +1.9 692,504 - CCNA_00641 0.43 +0.3 692,512 + CCNA_00641 0.46 -0.6 692,515 + CCNA_00641 0.47 -0.6 692,521 - CCNA_00641 0.49 +0.9 692,535 + CCNA_00641 0.54 +0.9 692,547 + CCNA_00641 0.58 +1.4 692,555 - CCNA_00641 0.60 -0.5 692,568 - CCNA_00641 0.65 -1.9 692,593 - CCNA_00641 0.73 +0.1 692,593 - CCNA_00641 0.73 -1.2 692,612 + CCNA_00641 0.79 -0.2 692,625 - CCNA_00641 0.84 +0.9 692,669 - -0.2 692,691 - CCNA_00642 0.19 +0.1 692,712 + CCNA_00642 0.27 -0.4 692,712 + CCNA_00642 0.27 -1.7 692,712 + CCNA_00642 0.27 -0.6 692,713 + CCNA_00642 0.28 +0.1 692,721 - CCNA_00642 0.31 -0.5 692,721 - CCNA_00642 0.31 -0.9 692,721 - CCNA_00642 0.31 -0.1 692,721 - CCNA_00642 0.31 -2.5 692,721 - CCNA_00642 0.31 -0.1 692,721 - CCNA_00642 0.31 +0.4 692,721 - CCNA_00642 0.31 +0.7 692,793 + CCNA_00642 0.59 -1.9 692,801 - CCNA_00642 0.62 +0.1 692,822 - CCNA_00642 0.70 -1.9 692,827 - CCNA_00642 0.72 -0.6 692,834 + CCNA_00642 0.74 -1.2 692,867 + CCNA_00642 0.87 -1.1 692,867 + CCNA_00642 0.87 +0.9 692,869 + CCNA_00642 0.88 -1.1 692,875 - -1.8 692,929 - +1.9 693,001 + +0.9 693,001 + +1.4 693,001 + +0.4 693,001 + +0.4 693,001 + +0.9 693,001 + +0.3 693,009 - +0.6 693,009 - +0.1 693,009 - -0.6 693,009 - +0.4 693,020 - -0.2 693,027 - -0.9 693,066 - +0.1 693,066 - +2.9 693,076 + +1.9 693,086 + +0.0 693,094 - -0.5 693,107 + +1.6 693,132 + -0.2 693,135 - +1.4 693,180 + +0.8 693,180 + -0.9 693,180 + +0.3 693,188 - -0.1 693,188 - -2.2 693,188 - -0.2 693,203 + +0.5 693,203 + +1.0 693,203 + +0.9 693,203 + +1.5 693,203 + +0.5 693,203 + +2.2 693,203 + +1.9 693,203 + +2.3 693,203 + +2.9 693,203 + +1.0 693,203 + +2.2 693,215 + -1.3 693,227 + +1.4 693,230 + +0.1 693,233 - +2.9 693,239 + +0.4 693,239 + +1.9 693,247 - +0.0 693,247 - +0.9 693,247 - +2.9 693,247 - -1.6 693,247 - +0.6 693,253 + +0.6 693,279 + -1.0 693,294 + +0.2 693,306 + +1.9 693,306 + +1.9 693,306 + +0.4 693,311 + -0.3 693,311 + +1.4 693,314 - -0.0 693,314 - -1.2 693,314 - -0.4 693,314 - -0.6 693,332 - -1.2 693,338 + +0.9 693,338 + -1.0 693,338 + -0.7 693,338 + -1.2 693,338 + -0.2 693,338 + +1.1 693,338 + +0.1 693,338 + -1.4 693,338 + -0.5 693,338 + +2.9 693,346 - +1.4 693,346 - +1.9 693,346 - +0.8 693,346 - -0.5 693,346 - -0.6 693,346 - -1.5 693,346 - -0.9 693,346 - -1.0 693,346 - +1.2 693,346 - -0.4 693,356 - +0.4 693,395 - CCNA_00643 0.27 +0.6 693,412 + CCNA_00643 0.38 +0.1 693,412 + CCNA_00643 0.38 -0.1 693,417 + CCNA_00643 0.41 -2.0 693,420 - CCNA_00643 0.44 +1.4 693,465 + CCNA_00643 0.74 +0.4 693,476 + CCNA_00643 0.82 -0.8 693,476 + CCNA_00643 0.82 -1.0 693,484 - CCNA_00643 0.87 +2.9 693,495 + -0.2 693,546 - -0.2 693,579 + -0.1 693,580 + +0.9 693,580 + -2.2 693,589 - +2.9 693,648 + -0.2 693,680 + +1.4 693,681 + -1.0 693,729 - +0.4 693,744 + -0.2 693,744 + -1.3 693,747 - +0.2 693,757 - -1.5 693,783 - +1.4 693,808 + -2.0 693,848 + +1.1 693,856 + +0.3 693,858 + +1.7 693,858 + +0.6 693,890 + +0.6 693,913 + -0.3 693,913 + -0.2 693,921 - -1.1 693,931 + -0.8 693,931 + -1.2 693,931 + +0.9 693,939 - +0.4 694,034 - +1.9 694,048 + -1.2 694,049 + +0.1 694,069 + +1.1 694,069 + +0.8 694,069 + +1.9 694,077 - +1.9 694,090 + -0.5 694,094 + -0.6 694,177 + CCNA_00644 0.12 +1.9 694,177 + CCNA_00644 0.12 -0.2 694,185 - CCNA_00644 0.12 -0.2 694,185 - CCNA_00644 0.12 -1.0 694,193 + CCNA_00644 0.13 -1.6 694,233 - CCNA_00644 0.16 +3.5 694,245 + CCNA_00644 0.16 +0.4 694,245 + CCNA_00644 0.16 -1.2 694,261 - CCNA_00644 0.18 -1.4 694,264 + CCNA_00644 0.18 +4.5 694,268 - CCNA_00644 0.18 -1.7 694,272 + CCNA_00644 0.18 -0.1 694,282 + CCNA_00644 0.19 +1.6 694,285 - CCNA_00644 0.19 -0.6 694,285 - CCNA_00644 0.19 -0.4 694,298 - CCNA_00644 0.20 +1.1 694,323 - CCNA_00644 0.22 +0.4 694,349 - CCNA_00644 0.24 +0.4 694,357 + CCNA_00644 0.24 -0.9 694,357 + CCNA_00644 0.24 -0.7 694,357 + CCNA_00644 0.24 -1.1 694,365 - CCNA_00644 0.25 +0.4 694,365 - CCNA_00644 0.25 -1.3 694,386 - CCNA_00644 0.26 -0.2 694,407 + CCNA_00644 0.28 +2.9 694,415 - CCNA_00644 0.29 +0.6 694,422 - CCNA_00644 0.29 +3.5 694,422 - CCNA_00644 0.29 +3.4 694,438 - CCNA_00644 0.30 -0.8 694,459 - CCNA_00644 0.32 -0.2 694,501 - CCNA_00644 0.35 -0.5 694,502 - CCNA_00644 0.35 -1.9
Or see this region's nucleotide sequence