Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00639 and CCNA_00640 are separated by 145 nucleotides CCNA_00640 and CCNA_00641 are separated by 203 nucleotides CCNA_00641 and CCNA_00642 overlap by 31 nucleotides CCNA_00642 and CCNA_00643 are separated by 456 nucleotides
CCNA_00639: CCNA_00639 - heme:hemopexin-binding protein, at 690,126 to 691,751
_00639
CCNA_00640: CCNA_00640 - hypothetical protein, at 691,897 to 692,172
_00640
CCNA_00641: CCNA_00641 - hypothetical protein, at 692,376 to 692,672
_00641
CCNA_00642: CCNA_00642 - hypothetical protein, at 692,642 to 692,899
_00642
CCNA_00643: CCNA_00643 - hypothetical protein, at 693,356 to 693,502
_00643
Position (kb) 692
693 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 691.655 kb on - strand at 691.662 kb on + strand at 691.692 kb on + strand at 691.700 kb on - strand at 691.700 kb on - strand at 691.702 kb on - strand at 691.702 kb on - strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.704 kb on + strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.712 kb on - strand at 691.718 kb on - strand at 691.733 kb on - strand at 691.759 kb on - strand at 691.772 kb on - strand at 691.973 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.005 kb on + strand, within CCNA_00640 at 692.008 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.013 kb on - strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.038 kb on + strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.046 kb on - strand, within CCNA_00640 at 692.060 kb on - strand, within CCNA_00640 at 692.064 kb on + strand, within CCNA_00640 at 692.067 kb on - strand, within CCNA_00640 at 692.073 kb on - strand, within CCNA_00640 at 692.102 kb on + strand, within CCNA_00640 at 692.102 kb on + strand, within CCNA_00640 at 692.110 kb on - strand, within CCNA_00640 at 692.111 kb on - strand, within CCNA_00640 at 692.113 kb on + strand, within CCNA_00640 at 692.135 kb on + strand, within CCNA_00640 at 692.141 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.143 kb on - strand, within CCNA_00640 at 692.145 kb on + strand at 692.145 kb on + strand at 692.145 kb on + strand at 692.150 kb on + strand at 692.150 kb on + strand at 692.150 kb on + strand at 692.153 kb on - strand at 692.153 kb on - strand at 692.160 kb on - strand at 692.195 kb on + strand at 692.195 kb on + strand at 692.200 kb on + strand at 692.200 kb on + strand at 692.208 kb on - strand at 692.210 kb on + strand at 692.215 kb on + strand at 692.225 kb on - strand at 692.255 kb on + strand at 692.263 kb on - strand at 692.341 kb on + strand at 692.341 kb on + strand at 692.341 kb on + strand at 692.349 kb on - strand at 692.349 kb on - strand at 692.349 kb on - strand at 692.358 kb on - strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.360 kb on + strand at 692.368 kb on - strand at 692.368 kb on - strand at 692.389 kb on - strand at 692.389 kb on - strand at 692.402 kb on + strand at 692.405 kb on - strand at 692.451 kb on + strand, within CCNA_00641 at 692.463 kb on + strand, within CCNA_00641 at 692.484 kb on + strand, within CCNA_00641 at 692.496 kb on + strand, within CCNA_00641 at 692.501 kb on + strand, within CCNA_00641 at 692.503 kb on - strand, within CCNA_00641 at 692.504 kb on - strand, within CCNA_00641 at 692.512 kb on + strand, within CCNA_00641 at 692.515 kb on + strand, within CCNA_00641 at 692.521 kb on - strand, within CCNA_00641 at 692.535 kb on + strand, within CCNA_00641 at 692.547 kb on + strand, within CCNA_00641 at 692.555 kb on - strand, within CCNA_00641 at 692.568 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.593 kb on - strand, within CCNA_00641 at 692.612 kb on + strand, within CCNA_00641 at 692.625 kb on - strand, within CCNA_00641 at 692.669 kb on - strand at 692.691 kb on - strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.712 kb on + strand, within CCNA_00642 at 692.713 kb on + strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.721 kb on - strand, within CCNA_00642 at 692.793 kb on + strand, within CCNA_00642 at 692.801 kb on - strand, within CCNA_00642 at 692.822 kb on - strand, within CCNA_00642 at 692.827 kb on - strand, within CCNA_00642 at 692.834 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.867 kb on + strand, within CCNA_00642 at 692.869 kb on + strand, within CCNA_00642 at 692.875 kb on - strand at 692.929 kb on - strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.001 kb on + strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.009 kb on - strand at 693.020 kb on - strand at 693.027 kb on - strand at 693.066 kb on - strand at 693.066 kb on - strand at 693.076 kb on + strand at 693.086 kb on + strand at 693.094 kb on - strand at 693.107 kb on + strand at 693.132 kb on + strand at 693.135 kb on - strand at 693.180 kb on + strand at 693.180 kb on + strand at 693.180 kb on + strand at 693.188 kb on - strand at 693.188 kb on - strand at 693.188 kb on - strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.203 kb on + strand at 693.215 kb on + strand at 693.227 kb on + strand at 693.230 kb on + strand at 693.233 kb on - strand at 693.239 kb on + strand at 693.239 kb on + strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.247 kb on - strand at 693.253 kb on + strand at 693.279 kb on + strand at 693.294 kb on + strand at 693.306 kb on + strand at 693.306 kb on + strand at 693.306 kb on + strand at 693.311 kb on + strand at 693.311 kb on + strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.314 kb on - strand at 693.332 kb on - strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.338 kb on + strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.346 kb on - strand at 693.356 kb on - strand at 693.395 kb on - strand, within CCNA_00643 at 693.412 kb on + strand, within CCNA_00643 at 693.412 kb on + strand, within CCNA_00643 at 693.417 kb on + strand, within CCNA_00643 at 693.420 kb on - strand, within CCNA_00643 at 693.465 kb on + strand, within CCNA_00643 at 693.476 kb on + strand, within CCNA_00643 at 693.476 kb on + strand, within CCNA_00643 at 693.484 kb on - strand, within CCNA_00643 at 693.495 kb on + strand at 693.546 kb on - strand at 693.579 kb on + strand at 693.580 kb on + strand at 693.580 kb on + strand at 693.589 kb on - strand at 693.648 kb on + strand at 693.680 kb on + strand at 693.681 kb on + strand at 693.729 kb on - strand at 693.744 kb on + strand at 693.744 kb on + strand at 693.747 kb on - strand at 693.757 kb on - strand at 693.783 kb on - strand at 693.808 kb on + strand at 693.848 kb on + strand at 693.856 kb on + strand at 693.858 kb on + strand at 693.858 kb on + strand at 693.890 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 691,655 - +0.4 691,662 + -0.7 691,692 + -1.5 691,700 - -1.2 691,700 - +1.4 691,702 - +1.9 691,702 - +0.6 691,704 + +0.1 691,704 + -1.0 691,704 + -1.2 691,704 + -1.0 691,704 + +2.5 691,704 + +2.9 691,712 - +0.1 691,712 - -1.8 691,712 - +0.6 691,712 - +0.4 691,712 - +1.4 691,712 - +0.9 691,712 - +0.9 691,712 - +0.9 691,712 - +0.6 691,712 - +0.4 691,718 - +0.6 691,733 - +0.3 691,759 - +0.9 691,772 - +1.9 691,973 + CCNA_00640 0.28 +0.4 692,005 + CCNA_00640 0.39 +0.9 692,005 + CCNA_00640 0.39 -0.4 692,005 + CCNA_00640 0.39 -2.2 692,005 + CCNA_00640 0.39 +0.4 692,005 + CCNA_00640 0.39 +0.1 692,008 - CCNA_00640 0.40 -0.1 692,013 - CCNA_00640 0.42 +0.1 692,013 - CCNA_00640 0.42 -0.1 692,013 - CCNA_00640 0.42 +1.4 692,013 - CCNA_00640 0.42 +0.9 692,038 + CCNA_00640 0.51 +0.9 692,038 + CCNA_00640 0.51 +0.1 692,038 + CCNA_00640 0.51 +0.4 692,038 + CCNA_00640 0.51 +0.4 692,038 + CCNA_00640 0.51 +0.6 692,038 + CCNA_00640 0.51 -2.4 692,038 + CCNA_00640 0.51 -1.3 692,038 + CCNA_00640 0.51 +0.1 692,038 + CCNA_00640 0.51 +1.4 692,038 + CCNA_00640 0.51 -1.3 692,038 + CCNA_00640 0.51 +0.1 692,038 + CCNA_00640 0.51 +0.9 692,038 + CCNA_00640 0.51 -0.2 692,038 + CCNA_00640 0.51 +0.6 692,046 - CCNA_00640 0.54 +1.9 692,046 - CCNA_00640 0.54 +0.6 692,046 - CCNA_00640 0.54 +0.1 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 -0.5 692,046 - CCNA_00640 0.54 +1.4 692,046 - +1.4 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 -0.1 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 -0.6 692,046 - CCNA_00640 0.54 +1.6 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 +0.6 692,046 - CCNA_00640 0.54 -1.1 692,046 - CCNA_00640 0.54 +0.4 692,046 - CCNA_00640 0.54 -1.9 692,046 - CCNA_00640 0.54 +1.4 692,046 - CCNA_00640 0.54 +0.9 692,046 - CCNA_00640 0.54 -1.3 692,046 - CCNA_00640 0.54 +1.9 692,060 - CCNA_00640 0.59 +0.4 692,064 + CCNA_00640 0.61 +0.4 692,067 - CCNA_00640 0.62 -0.1 692,073 - CCNA_00640 0.64 +1.9 692,102 + CCNA_00640 0.74 -1.9 692,102 + CCNA_00640 0.74 -0.2 692,110 - CCNA_00640 0.77 +0.9 692,111 - CCNA_00640 0.78 +0.4 692,113 + CCNA_00640 0.78 -1.2 692,135 + CCNA_00640 0.86 -0.5 692,141 - CCNA_00640 0.88 +0.4 692,143 - CCNA_00640 0.89 +2.8 692,143 - CCNA_00640 0.89 +3.1 692,143 - CCNA_00640 0.89 +2.6 692,143 - CCNA_00640 0.89 +3.0 692,145 + -1.0 692,145 + +2.9 692,145 + +0.9 692,150 + +0.9 692,150 + -1.3 692,150 + -0.6 692,153 - +0.8 692,153 - +0.4 692,160 - +0.9 692,195 + -1.2 692,195 + +0.9 692,200 + +0.9 692,200 + -0.4 692,208 - +1.9 692,210 + +2.9 692,215 + +0.9 692,225 - -0.5 692,255 + +0.9 692,263 - -0.3 692,341 + -0.1 692,341 + +0.6 692,341 + +0.1 692,349 - -1.3 692,349 - -1.3 692,349 - -1.3 692,358 - -1.0 692,360 + +0.9 692,360 + +2.9 692,360 + -0.2 692,368 - -0.6 692,368 - -0.6 692,389 - -0.5 692,389 - +0.6 692,402 + +1.4 692,405 - +3.3 692,451 + CCNA_00641 0.25 -0.1 692,463 + CCNA_00641 0.29 -0.2 692,484 + CCNA_00641 0.36 +0.9 692,496 + CCNA_00641 0.40 +0.4 692,501 + CCNA_00641 0.42 +1.4 692,503 - CCNA_00641 0.43 +1.9 692,504 - CCNA_00641 0.43 +0.3 692,512 + CCNA_00641 0.46 -0.6 692,515 + CCNA_00641 0.47 -0.6 692,521 - CCNA_00641 0.49 +0.9 692,535 + CCNA_00641 0.54 +0.9 692,547 + CCNA_00641 0.58 +1.4 692,555 - CCNA_00641 0.60 -0.5 692,568 - CCNA_00641 0.65 -1.9 692,593 - CCNA_00641 0.73 +0.1 692,593 - CCNA_00641 0.73 -1.2 692,612 + CCNA_00641 0.79 -0.2 692,625 - CCNA_00641 0.84 +0.9 692,669 - -0.2 692,691 - CCNA_00642 0.19 +0.1 692,712 + CCNA_00642 0.27 -0.4 692,712 + CCNA_00642 0.27 -1.7 692,712 + CCNA_00642 0.27 -0.6 692,713 + CCNA_00642 0.28 +0.1 692,721 - CCNA_00642 0.31 -0.5 692,721 - CCNA_00642 0.31 -0.9 692,721 - CCNA_00642 0.31 -0.1 692,721 - CCNA_00642 0.31 -2.5 692,721 - CCNA_00642 0.31 -0.1 692,721 - CCNA_00642 0.31 +0.4 692,721 - CCNA_00642 0.31 +0.7 692,793 + CCNA_00642 0.59 -1.9 692,801 - CCNA_00642 0.62 +0.1 692,822 - CCNA_00642 0.70 -1.9 692,827 - CCNA_00642 0.72 -0.6 692,834 + CCNA_00642 0.74 -1.2 692,867 + CCNA_00642 0.87 -1.1 692,867 + CCNA_00642 0.87 +0.9 692,869 + CCNA_00642 0.88 -1.1 692,875 - -1.8 692,929 - +1.9 693,001 + +0.9 693,001 + +1.4 693,001 + +0.4 693,001 + +0.4 693,001 + +0.9 693,001 + +0.3 693,009 - +0.6 693,009 - +0.1 693,009 - -0.6 693,009 - +0.4 693,020 - -0.2 693,027 - -0.9 693,066 - +0.1 693,066 - +2.9 693,076 + +1.9 693,086 + +0.0 693,094 - -0.5 693,107 + +1.6 693,132 + -0.2 693,135 - +1.4 693,180 + +0.8 693,180 + -0.9 693,180 + +0.3 693,188 - -0.1 693,188 - -2.2 693,188 - -0.2 693,203 + +0.5 693,203 + +1.0 693,203 + +0.9 693,203 + +1.5 693,203 + +0.5 693,203 + +2.2 693,203 + +1.9 693,203 + +2.3 693,203 + +2.9 693,203 + +1.0 693,203 + +2.2 693,215 + -1.3 693,227 + +1.4 693,230 + +0.1 693,233 - +2.9 693,239 + +0.4 693,239 + +1.9 693,247 - +0.0 693,247 - +0.9 693,247 - +2.9 693,247 - -1.6 693,247 - +0.6 693,253 + +0.6 693,279 + -1.0 693,294 + +0.2 693,306 + +1.9 693,306 + +1.9 693,306 + +0.4 693,311 + -0.3 693,311 + +1.4 693,314 - -0.0 693,314 - -1.2 693,314 - -0.4 693,314 - -0.6 693,332 - -1.2 693,338 + +0.9 693,338 + -1.0 693,338 + -0.7 693,338 + -1.2 693,338 + -0.2 693,338 + +1.1 693,338 + +0.1 693,338 + -1.4 693,338 + -0.5 693,338 + +2.9 693,346 - +1.4 693,346 - +1.9 693,346 - +0.8 693,346 - -0.5 693,346 - -0.6 693,346 - -1.5 693,346 - -0.9 693,346 - -1.0 693,346 - +1.2 693,346 - -0.4 693,356 - +0.4 693,395 - CCNA_00643 0.27 +0.6 693,412 + CCNA_00643 0.38 +0.1 693,412 + CCNA_00643 0.38 -0.1 693,417 + CCNA_00643 0.41 -2.0 693,420 - CCNA_00643 0.44 +1.4 693,465 + CCNA_00643 0.74 +0.4 693,476 + CCNA_00643 0.82 -0.8 693,476 + CCNA_00643 0.82 -1.0 693,484 - CCNA_00643 0.87 +2.9 693,495 + -0.2 693,546 - -0.2 693,579 + -0.1 693,580 + +0.9 693,580 + -2.2 693,589 - +2.9 693,648 + -0.2 693,680 + +1.4 693,681 + -1.0 693,729 - +0.4 693,744 + -0.2 693,744 + -1.3 693,747 - +0.2 693,757 - -1.5 693,783 - +1.4 693,808 + -2.0 693,848 + +1.1 693,856 + +0.3 693,858 + +1.7 693,858 + +0.6 693,890 + +0.6
Or see this region's nucleotide sequence