Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00561

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00559 and CCNA_00560 are separated by 77 nucleotidesCCNA_00560 and CCNA_00561 overlap by 4 nucleotidesCCNA_00561 and CCNA_00562 overlap by 4 nucleotides CCNA_00559: CCNA_00559 - homoserine O-acetyltransferase, at 574,589 to 575,737 _00559 CCNA_00560: CCNA_00560 - phosphohistidine phosphatase SixA, at 575,815 to 576,327 _00560 CCNA_00561: CCNA_00561 - conserved hypothetical cytosolic protein, at 576,324 to 576,668 _00561 CCNA_00562: CCNA_00562 - dihydroorotate dehydrogenase, at 576,665 to 577,723 _00562 Position (kb) 576 577Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 575.328 kb on + strand, within CCNA_00559at 575.336 kb on - strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.354 kb on + strand, within CCNA_00559at 575.362 kb on - strand, within CCNA_00559at 575.374 kb on + strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.382 kb on - strand, within CCNA_00559at 575.384 kb on - strand, within CCNA_00559at 575.389 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.410 kb on - strand, within CCNA_00559at 575.451 kb on - strand, within CCNA_00559at 575.499 kb on - strand, within CCNA_00559at 575.526 kb on + strand, within CCNA_00559at 575.546 kb on - strand, within CCNA_00559at 575.552 kb on - strand, within CCNA_00559at 575.561 kb on + strand, within CCNA_00559at 575.579 kb on - strand, within CCNA_00559at 575.584 kb on - strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.586 kb on + strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.594 kb on - strand, within CCNA_00559at 575.618 kb on + strand, within CCNA_00559at 575.621 kb on - strand, within CCNA_00559at 575.625 kb on - strandat 575.641 kb on - strandat 575.652 kb on + strandat 575.660 kb on - strandat 575.660 kb on - strandat 575.674 kb on - strandat 575.739 kb on - strandat 575.741 kb on - strandat 575.749 kb on - strandat 575.797 kb on - strandat 575.799 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.801 kb on + strandat 575.807 kb on - strandat 575.807 kb on - strandat 575.809 kb on - strandat 575.818 kb on + strandat 575.835 kb on - strandat 575.841 kb on + strandat 575.847 kb on + strandat 575.847 kb on + strandat 575.860 kb on + strandat 575.860 kb on + strandat 575.868 kb on - strand, within CCNA_00560at 575.868 kb on - strand, within CCNA_00560at 575.898 kb on + strand, within CCNA_00560at 575.900 kb on - strand, within CCNA_00560at 576.001 kb on + strand, within CCNA_00560at 576.027 kb on - strand, within CCNA_00560at 576.031 kb on - strand, within CCNA_00560at 576.048 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.057 kb on + strand, within CCNA_00560at 576.065 kb on - strand, within CCNA_00560at 576.175 kb on + strand, within CCNA_00560at 576.175 kb on + strand, within CCNA_00560at 576.188 kb on - strand, within CCNA_00560at 576.191 kb on + strand, within CCNA_00560at 576.244 kb on + strand, within CCNA_00560at 576.263 kb on - strand, within CCNA_00560at 576.270 kb on - strand, within CCNA_00560at 576.288 kb on + strandat 576.288 kb on + strandat 576.340 kb on - strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.342 kb on + strandat 576.350 kb on - strandat 576.350 kb on - strandat 576.357 kb on + strandat 576.357 kb on + strandat 576.375 kb on + strand, within CCNA_00561at 576.375 kb on + strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.383 kb on - strand, within CCNA_00561at 576.431 kb on - strand, within CCNA_00561at 576.455 kb on - strand, within CCNA_00561at 576.455 kb on - strand, within CCNA_00561at 576.470 kb on + strand, within CCNA_00561at 576.478 kb on - strand, within CCNA_00561at 576.528 kb on + strand, within CCNA_00561at 576.536 kb on - strand, within CCNA_00561at 576.536 kb on - strandat 576.536 kb on - strand, within CCNA_00561at 576.580 kb on - strand, within CCNA_00561at 576.600 kb on - strand, within CCNA_00561at 576.615 kb on + strand, within CCNA_00561at 576.669 kb on + strandat 576.695 kb on + strandat 576.695 kb on + strandat 576.703 kb on - strandat 576.703 kb on - strandat 576.703 kb on - strandat 576.727 kb on - strandat 576.742 kb on + strandat 576.747 kb on + strandat 576.750 kb on - strandat 576.761 kb on - strandat 576.761 kb on - strandat 576.761 kb on - strandat 576.783 kb on + strand, within CCNA_00562at 576.810 kb on + strand, within CCNA_00562at 576.818 kb on - strand, within CCNA_00562at 576.841 kb on - strand, within CCNA_00562at 576.890 kb on + strand, within CCNA_00562at 576.905 kb on - strand, within CCNA_00562at 576.915 kb on + strand, within CCNA_00562at 576.983 kb on + strand, within CCNA_00562at 576.998 kb on + strand, within CCNA_00562at 577.006 kb on - strand, within CCNA_00562at 577.006 kb on - strand, within CCNA_00562at 577.054 kb on - strand, within CCNA_00562at 577.072 kb on - strand, within CCNA_00562at 577.087 kb on - strand, within CCNA_00562at 577.097 kb on - strand, within CCNA_00562at 577.148 kb on + strand, within CCNA_00562at 577.188 kb on + strand, within CCNA_00562at 577.188 kb on + strand, within CCNA_00562at 577.196 kb on - strand, within CCNA_00562at 577.196 kb on - strand, within CCNA_00562at 577.205 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.210 kb on + strand, within CCNA_00562at 577.218 kb on - strand, within CCNA_00562at 577.218 kb on - strand, within CCNA_00562at 577.262 kb on + strand, within CCNA_00562at 577.270 kb on - strand, within CCNA_00562at 577.272 kb on - strand, within CCNA_00562at 577.311 kb on + strand, within CCNA_00562at 577.319 kb on - strand, within CCNA_00562at 577.333 kb on + strand, within CCNA_00562at 577.333 kb on + strand, within CCNA_00562at 577.342 kb on - strand, within CCNA_00562at 577.342 kb on - strand, within CCNA_00562at 577.347 kb on - strand, within CCNA_00562at 577.357 kb on + strand, within CCNA_00562at 577.369 kb on + strand, within CCNA_00562at 577.370 kb on - strand, within CCNA_00562at 577.385 kb on - strand, within CCNA_00562at 577.405 kb on - strand, within CCNA_00562at 577.439 kb on - strand, within CCNA_00562at 577.474 kb on + strand, within CCNA_00562at 577.526 kb on + strand, within CCNA_00562at 577.571 kb on + strand, within CCNA_00562at 577.598 kb on + strand, within CCNA_00562at 577.603 kb on + strand, within CCNA_00562at 577.603 kb on + strand, within CCNA_00562at 577.606 kb on - strand, within CCNA_00562at 577.608 kb on + strand, within CCNA_00562at 577.613 kb on + strand, within CCNA_00562at 577.616 kb on - strand, within CCNA_00562at 577.618 kb on + strandat 577.626 kb on - strandat 577.629 kb on + strandat 577.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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575,328 + CCNA_00559 0.64 +2.9
575,336 - CCNA_00559 0.65 +1.4
575,354 + CCNA_00559 0.67 +2.3
575,354 + CCNA_00559 0.67 +0.1
575,362 - CCNA_00559 0.67 +2.4
575,374 + CCNA_00559 0.68 +0.9
575,382 - CCNA_00559 0.69 +0.5
575,382 - CCNA_00559 0.69 +0.7
575,384 - CCNA_00559 0.69 +0.2
575,389 - CCNA_00559 0.70 -1.8
575,410 - CCNA_00559 0.71 +1.1
575,410 - CCNA_00559 0.71 +2.1
575,410 - CCNA_00559 0.71 +1.4
575,451 - CCNA_00559 0.75 +0.1
575,499 - CCNA_00559 0.79 +0.2
575,526 + CCNA_00559 0.82 +0.1
575,546 - CCNA_00559 0.83 -0.5
575,552 - CCNA_00559 0.84 -0.1
575,561 + CCNA_00559 0.85 -0.3
575,579 - CCNA_00559 0.86 +1.2
575,584 - CCNA_00559 0.87 -1.1
575,586 + CCNA_00559 0.87 -0.3
575,586 + CCNA_00559 0.87 +1.3
575,586 + CCNA_00559 0.87 +0.1
575,586 + CCNA_00559 0.87 -0.7
575,586 + CCNA_00559 0.87 -1.3
575,586 + CCNA_00559 0.87 +0.1
575,586 + CCNA_00559 0.87 -1.0
575,586 + CCNA_00559 0.87 +0.5
575,586 + CCNA_00559 0.87 +0.9
575,586 + CCNA_00559 0.87 +0.7
575,594 - CCNA_00559 0.87 +2.7
575,594 - CCNA_00559 0.87 +1.7
575,594 - CCNA_00559 0.87 +0.6
575,594 - CCNA_00559 0.87 +0.4
575,594 - CCNA_00559 0.87 +1.0
575,594 - CCNA_00559 0.87 +0.2
575,594 - CCNA_00559 0.87 +0.1
575,594 - CCNA_00559 0.87 -1.5
575,594 - CCNA_00559 0.87 -1.5
575,618 + CCNA_00559 0.90 -1.0
575,621 - CCNA_00559 0.90 +0.1
575,625 - +2.9
575,641 - +1.4
575,652 + +1.9
575,660 - +3.5
575,660 - +3.5
575,674 - +1.0
575,739 - -1.9
575,741 - +0.1
575,749 - -1.4
575,797 - +2.9
575,799 + -0.5
575,801 + -0.9
575,801 + -0.6
575,801 + +1.1
575,801 + -1.3
575,801 + -1.0
575,801 + -1.0
575,807 - -0.9
575,807 - +1.3
575,809 - -0.8
575,818 + +1.3
575,835 - +0.4
575,841 + -0.3
575,847 + +2.3
575,847 + +1.1
575,860 + +1.9
575,860 + -1.1
575,868 - CCNA_00560 0.10 -1.3
575,868 - CCNA_00560 0.10 +0.1
575,898 + CCNA_00560 0.16 -0.6
575,900 - CCNA_00560 0.17 +0.9
576,001 + CCNA_00560 0.36 +1.5
576,027 - CCNA_00560 0.41 +0.9
576,031 - CCNA_00560 0.42 +0.5
576,048 + CCNA_00560 0.45 +1.2
576,057 + CCNA_00560 0.47 +1.4
576,057 + CCNA_00560 0.47 -0.3
576,057 + CCNA_00560 0.47 +1.9
576,057 + CCNA_00560 0.47 +0.7
576,065 - CCNA_00560 0.49 +1.9
576,175 + CCNA_00560 0.70 +0.5
576,175 + CCNA_00560 0.70 +1.9
576,188 - CCNA_00560 0.73 -1.2
576,191 + CCNA_00560 0.73 -0.9
576,244 + CCNA_00560 0.84 -0.1
576,263 - CCNA_00560 0.87 -0.8
576,270 - CCNA_00560 0.89 -0.6
576,288 + +1.5
576,288 + +1.0
576,340 - +2.9
576,342 + -0.4
576,342 + +0.2
576,342 + +0.7
576,342 + +0.3
576,350 - -1.1
576,350 - +2.4
576,357 + -0.1
576,357 + +2.3
576,375 + CCNA_00561 0.15 +0.4
576,375 + CCNA_00561 0.15 +2.0
576,383 - CCNA_00561 0.17 -1.0
576,383 - CCNA_00561 0.17 +0.9
576,383 - CCNA_00561 0.17 -0.9
576,383 - CCNA_00561 0.17 +1.9
576,431 - CCNA_00561 0.31 +2.9
576,455 - CCNA_00561 0.38 +1.3
576,455 - CCNA_00561 0.38 +0.9
576,470 + CCNA_00561 0.42 +1.2
576,478 - CCNA_00561 0.45 +0.3
576,528 + CCNA_00561 0.59 -0.0
576,536 - CCNA_00561 0.61 -1.5
576,536 - +1.3
576,536 - CCNA_00561 0.61 -0.4
576,580 - CCNA_00561 0.74 +0.3
576,600 - CCNA_00561 0.80 -1.6
576,615 + CCNA_00561 0.84 +0.9
576,669 + -0.7
576,695 + +3.2
576,695 + +1.8
576,703 - +0.3
576,703 - +0.8
576,703 - -0.2
576,727 - +0.9
576,742 + +2.6
576,747 + +0.3
576,750 - -0.2
576,761 - +0.5
576,761 - -0.1
576,761 - -1.0
576,783 + CCNA_00562 0.11 +0.6
576,810 + CCNA_00562 0.14 +2.1
576,818 - CCNA_00562 0.14 +2.7
576,841 - CCNA_00562 0.17 +0.5
576,890 + CCNA_00562 0.21 +1.1
576,905 - CCNA_00562 0.23 +0.1
576,915 + CCNA_00562 0.24 +2.9
576,983 + CCNA_00562 0.30 +1.9
576,998 + CCNA_00562 0.31 +2.1
577,006 - CCNA_00562 0.32 +1.1
577,006 - CCNA_00562 0.32 +0.1
577,054 - CCNA_00562 0.37 -0.1
577,072 - CCNA_00562 0.38 +0.5
577,087 - CCNA_00562 0.40 +0.3
577,097 - CCNA_00562 0.41 -0.7
577,148 + CCNA_00562 0.46 +2.8
577,188 + CCNA_00562 0.49 +2.4
577,188 + CCNA_00562 0.49 +2.1
577,196 - CCNA_00562 0.50 +1.4
577,196 - CCNA_00562 0.50 +1.9
577,205 + CCNA_00562 0.51 +1.2
577,210 + CCNA_00562 0.51 +2.6
577,210 + CCNA_00562 0.51 +3.9
577,210 + CCNA_00562 0.51 +2.1
577,210 + CCNA_00562 0.51 +1.6
577,210 + CCNA_00562 0.51 +2.4
577,210 + CCNA_00562 0.51 +4.2
577,218 - CCNA_00562 0.52 -0.1
577,218 - CCNA_00562 0.52 +0.9
577,262 + CCNA_00562 0.56 +3.0
577,270 - CCNA_00562 0.57 +1.9
577,272 - CCNA_00562 0.57 -0.3
577,311 + CCNA_00562 0.61 +2.0
577,319 - CCNA_00562 0.62 +2.3
577,333 + CCNA_00562 0.63 +1.9
577,333 + CCNA_00562 0.63 +3.1
577,342 - CCNA_00562 0.64 -1.1
577,342 - CCNA_00562 0.64 +0.5
577,347 - CCNA_00562 0.64 -0.6
577,357 + CCNA_00562 0.65 +3.1
577,369 + CCNA_00562 0.66 +2.3
577,370 - CCNA_00562 0.67 +1.1
577,385 - CCNA_00562 0.68 +1.3
577,405 - CCNA_00562 0.70 +0.5
577,439 - CCNA_00562 0.73 +0.1
577,474 + CCNA_00562 0.76 +1.9
577,526 + CCNA_00562 0.81 +2.1
577,571 + CCNA_00562 0.86 -0.5
577,598 + CCNA_00562 0.88 +1.9
577,603 + CCNA_00562 0.89 +1.0
577,603 + CCNA_00562 0.89 +3.3
577,606 - CCNA_00562 0.89 -0.6
577,608 + CCNA_00562 0.89 +2.3
577,613 + CCNA_00562 0.90 +3.1
577,616 - CCNA_00562 0.90 +1.5
577,618 + +1.8
577,626 - +1.4
577,629 + +1.7
577,634 + +2.7

Or see this region's nucleotide sequence