Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00522

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00520 and CCNA_00521 are separated by 140 nucleotidesCCNA_00521 and CCNA_00522 overlap by 20 nucleotidesCCNA_00522 and CCNA_00523 are separated by 47 nucleotidesCCNA_00523 and CCNA_00524 overlap by 4 nucleotides CCNA_00520: CCNA_00520 - ribose-phosphate pyrophosphokinase, at 535,198 to 536,136 _00520 CCNA_00521: CCNA_00521 - antitoxin protein, at 536,277 to 536,528 _00521 CCNA_00522: CCNA_00522 - BrnT-related ribonuclease toxin, at 536,509 to 536,805 _00522 CCNA_00523: CCNA_00523 - multicopper polyphenol oxidase, at 536,853 to 537,638 _00523 CCNA_00524: CCNA_00524 - conserved hypothetical cytosolic protein, at 537,635 to 538,759 _00524 Position (kb) 536 537Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 536.151 kb on - strandat 536.151 kb on - strandat 536.156 kb on - strandat 536.156 kb on - strandat 536.158 kb on - strandat 536.161 kb on - strandat 536.203 kb on - strandat 536.251 kb on - strandat 536.252 kb on + strandat 536.253 kb on + strandat 536.261 kb on - strandat 536.262 kb on - strandat 536.272 kb on - strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.292 kb on - strandat 536.385 kb on - strand, within CCNA_00521at 536.385 kb on - strand, within CCNA_00521at 536.435 kb on - strand, within CCNA_00521at 536.526 kb on - strandat 536.526 kb on - strandat 536.531 kb on - strandat 536.541 kb on + strand, within CCNA_00522at 536.551 kb on + strand, within CCNA_00522at 536.580 kb on - strand, within CCNA_00522at 536.591 kb on - strand, within CCNA_00522at 536.593 kb on - strand, within CCNA_00522at 536.604 kb on + strand, within CCNA_00522at 536.631 kb on + strand, within CCNA_00522at 536.637 kb on - strand, within CCNA_00522at 536.662 kb on + strand, within CCNA_00522at 536.720 kb on + strand, within CCNA_00522at 536.728 kb on - strand, within CCNA_00522at 536.790 kb on - strandat 536.858 kb on + strandat 536.858 kb on + strandat 536.858 kb on + strandat 536.866 kb on - strandat 536.866 kb on - strandat 536.866 kb on - strandat 536.866 kb on - strandat 536.866 kb on - strandat 536.904 kb on + strandat 536.955 kb on + strand, within CCNA_00523at 536.996 kb on - strand, within CCNA_00523at 537.003 kb on + strand, within CCNA_00523at 537.003 kb on + strand, within CCNA_00523at 537.008 kb on + strand, within CCNA_00523at 537.011 kb on - strand, within CCNA_00523at 537.023 kb on + strand, within CCNA_00523at 537.023 kb on + strand, within CCNA_00523at 537.031 kb on - strand, within CCNA_00523at 537.031 kb on - strand, within CCNA_00523at 537.069 kb on + strand, within CCNA_00523at 537.069 kb on + strand, within CCNA_00523at 537.069 kb on + strand, within CCNA_00523at 537.074 kb on + strand, within CCNA_00523at 537.077 kb on - strand, within CCNA_00523at 537.082 kb on - strand, within CCNA_00523at 537.082 kb on - strand, within CCNA_00523at 537.096 kb on - strand, within CCNA_00523at 537.115 kb on - strand, within CCNA_00523at 537.116 kb on - strandat 537.136 kb on - strand, within CCNA_00523at 537.196 kb on - strand, within CCNA_00523at 537.198 kb on + strand, within CCNA_00523at 537.212 kb on + strand, within CCNA_00523at 537.217 kb on + strand, within CCNA_00523at 537.217 kb on + strand, within CCNA_00523at 537.222 kb on + strand, within CCNA_00523at 537.225 kb on - strand, within CCNA_00523at 537.230 kb on - strand, within CCNA_00523at 537.237 kb on - strand, within CCNA_00523at 537.237 kb on - strand, within CCNA_00523at 537.269 kb on + strand, within CCNA_00523at 537.279 kb on + strand, within CCNA_00523at 537.334 kb on + strand, within CCNA_00523at 537.334 kb on + strand, within CCNA_00523at 537.424 kb on - strand, within CCNA_00523at 537.434 kb on - strand, within CCNA_00523at 537.446 kb on + strand, within CCNA_00523at 537.525 kb on - strand, within CCNA_00523at 537.528 kb on + strand, within CCNA_00523at 537.536 kb on - strandat 537.546 kb on - strand, within CCNA_00523at 537.614 kb on - strandat 537.623 kb on + strandat 537.631 kb on - strandat 537.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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536,151 - +2.0
536,151 - +2.7
536,156 - +2.7
536,156 - +2.8
536,158 - +2.8
536,161 - +3.3
536,203 - +0.8
536,251 - -0.5
536,252 + +1.4
536,253 + -1.4
536,261 - -0.1
536,262 - +0.3
536,272 - +0.2
536,275 + -1.5
536,275 + -0.2
536,275 + -0.6
536,292 - +2.0
536,385 - CCNA_00521 0.43 +1.5
536,385 - CCNA_00521 0.43 +1.8
536,435 - CCNA_00521 0.63 +3.8
536,526 - +0.8
536,526 - +1.1
536,531 - +1.4
536,541 + CCNA_00522 0.11 +1.2
536,551 + CCNA_00522 0.14 -0.0
536,580 - CCNA_00522 0.24 +0.2
536,591 - CCNA_00522 0.28 -0.2
536,593 - CCNA_00522 0.28 +1.7
536,604 + CCNA_00522 0.32 +0.1
536,631 + CCNA_00522 0.41 +1.8
536,637 - CCNA_00522 0.43 +0.7
536,662 + CCNA_00522 0.52 +0.5
536,720 + CCNA_00522 0.71 -0.2
536,728 - CCNA_00522 0.74 +1.8
536,790 - +0.7
536,858 + -0.3
536,858 + +0.1
536,858 + -0.3
536,866 - +1.1
536,866 - -0.4
536,866 - +0.0
536,866 - +0.3
536,866 - +1.4
536,904 + -1.3
536,955 + CCNA_00523 0.13 +0.8
536,996 - CCNA_00523 0.18 +1.1
537,003 + CCNA_00523 0.19 -1.8
537,003 + CCNA_00523 0.19 -0.2
537,008 + CCNA_00523 0.20 +0.0
537,011 - CCNA_00523 0.20 +1.6
537,023 + CCNA_00523 0.22 +0.0
537,023 + CCNA_00523 0.22 -1.5
537,031 - CCNA_00523 0.23 +1.3
537,031 - CCNA_00523 0.23 +1.0
537,069 + CCNA_00523 0.27 -0.2
537,069 + CCNA_00523 0.27 +1.8
537,069 + CCNA_00523 0.27 -1.2
537,074 + CCNA_00523 0.28 +0.0
537,077 - CCNA_00523 0.28 +0.2
537,082 - CCNA_00523 0.29 +1.2
537,082 - CCNA_00523 0.29 -0.6
537,096 - CCNA_00523 0.31 -1.1
537,115 - CCNA_00523 0.33 +1.8
537,116 - +1.8
537,136 - CCNA_00523 0.36 +0.2
537,196 - CCNA_00523 0.44 +2.0
537,198 + CCNA_00523 0.44 -2.1
537,212 + CCNA_00523 0.46 +1.8
537,217 + CCNA_00523 0.46 +1.8
537,217 + CCNA_00523 0.46 +2.3
537,222 + CCNA_00523 0.47 +0.8
537,225 - CCNA_00523 0.47 -1.0
537,230 - CCNA_00523 0.48 -0.6
537,237 - CCNA_00523 0.49 +0.5
537,237 - CCNA_00523 0.49 +0.7
537,269 + CCNA_00523 0.53 +1.2
537,279 + CCNA_00523 0.54 -0.9
537,334 + CCNA_00523 0.61 +0.0
537,334 + CCNA_00523 0.61 +0.5
537,424 - CCNA_00523 0.73 -0.9
537,434 - CCNA_00523 0.74 +0.6
537,446 + CCNA_00523 0.75 +0.0
537,525 - CCNA_00523 0.85 -0.3
537,528 + CCNA_00523 0.86 -0.6
537,536 - +1.8
537,546 - CCNA_00523 0.88 +2.1
537,614 - +4.8
537,623 + -0.3
537,631 - +0.9
537,655 - +1.7

Or see this region's nucleotide sequence