Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00494

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00492 and CCNA_00493 are separated by 2 nucleotidesCCNA_00493 and CCNA_00494 are separated by 6 nucleotidesCCNA_00494 and CCNA_00495 are separated by 52 nucleotidesCCNA_00495 and CCNA_00496 overlap by 4 nucleotides CCNA_00492: CCNA_00492 - cysteinyl-tRNA synthetase, at 509,704 to 511,095 _00492 CCNA_00493: CCNA_00493 - putative polyketide cyclase-dehydrase/lipid transport protein, at 511,098 to 511,559 _00493 CCNA_00494: CCNA_00494 - transport protein, at 511,566 to 512,027 _00494 CCNA_00495: CCNA_00495 - putative membrane protein insertion efficiency factor YidD, at 512,080 to 512,334 _00495 CCNA_00496: CCNA_00496 - threonyl-tRNA synthetase, at 512,331 to 514,298 _00496 Position (kb) 511 512 513Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 511.103 kb on - strandat 511.110 kb on + strandat 511.110 kb on + strandat 511.116 kb on - strandat 511.116 kb on - strandat 511.118 kb on - strandat 511.118 kb on - strandat 511.123 kb on + strandat 511.134 kb on - strandat 511.139 kb on + strandat 511.161 kb on - strand, within CCNA_00493at 511.175 kb on + strand, within CCNA_00493at 511.175 kb on + strand, within CCNA_00493at 511.188 kb on - strand, within CCNA_00493at 511.219 kb on + strand, within CCNA_00493at 511.251 kb on - strand, within CCNA_00493at 511.253 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.293 kb on + strand, within CCNA_00493at 511.301 kb on - strand, within CCNA_00493at 511.301 kb on - strand, within CCNA_00493at 511.414 kb on + strand, within CCNA_00493at 511.416 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.424 kb on + strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.432 kb on - strand, within CCNA_00493at 511.456 kb on + strand, within CCNA_00493at 511.472 kb on + strand, within CCNA_00493at 511.483 kb on + strand, within CCNA_00493at 511.517 kb on + strandat 511.517 kb on + strandat 511.517 kb on + strandat 511.525 kb on - strandat 511.525 kb on - strandat 511.526 kb on + strandat 511.585 kb on - strandat 511.585 kb on - strandat 511.981 kb on - strandat 512.003 kb on + strandat 512.037 kb on + strandat 512.037 kb on + strandat 512.053 kb on - strandat 512.055 kb on - strandat 512.077 kb on + strandat 512.088 kb on + strandat 512.099 kb on + strandat 512.105 kb on + strandat 512.135 kb on - strand, within CCNA_00495at 512.145 kb on + strand, within CCNA_00495at 512.145 kb on + strand, within CCNA_00495at 512.157 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.162 kb on + strand, within CCNA_00495at 512.170 kb on - strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.177 kb on + strand, within CCNA_00495at 512.185 kb on - strand, within CCNA_00495at 512.185 kb on - strand, within CCNA_00495at 512.205 kb on + strand, within CCNA_00495at 512.217 kb on + strandat 512.225 kb on - strand, within CCNA_00495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
511,103 - -0.3
511,110 + +0.4
511,110 + +1.2
511,116 - -0.8
511,116 - +1.2
511,118 - -1.6
511,118 - -1.6
511,123 + +1.6
511,134 - +1.8
511,139 + +0.2
511,161 - CCNA_00493 0.14 -0.4
511,175 + CCNA_00493 0.17 +0.9
511,175 + CCNA_00493 0.17 +0.3
511,188 - CCNA_00493 0.19 +2.4
511,219 + CCNA_00493 0.26 +1.0
511,251 - CCNA_00493 0.33 +0.8
511,253 + CCNA_00493 0.34 +1.4
511,293 + CCNA_00493 0.42 +0.2
511,293 + CCNA_00493 0.42 +0.2
511,293 + CCNA_00493 0.42 -0.0
511,293 + CCNA_00493 0.42 -0.7
511,293 + CCNA_00493 0.42 +1.6
511,293 + CCNA_00493 0.42 +0.8
511,293 + CCNA_00493 0.42 -0.6
511,293 + CCNA_00493 0.42 +1.0
511,301 - CCNA_00493 0.44 +0.8
511,301 - CCNA_00493 0.44 -1.3
511,414 + CCNA_00493 0.68 -1.2
511,416 + CCNA_00493 0.69 +1.2
511,424 + CCNA_00493 0.71 -0.6
511,424 + CCNA_00493 0.71 +0.8
511,424 + CCNA_00493 0.71 +1.6
511,424 + CCNA_00493 0.71 +0.7
511,424 + CCNA_00493 0.71 +1.3
511,432 - CCNA_00493 0.72 -0.2
511,432 - CCNA_00493 0.72 +0.4
511,432 - CCNA_00493 0.72 -1.0
511,432 - CCNA_00493 0.72 -1.1
511,432 - CCNA_00493 0.72 -0.2
511,432 - CCNA_00493 0.72 -0.9
511,456 + CCNA_00493 0.77 +0.3
511,472 + CCNA_00493 0.81 +1.0
511,483 + CCNA_00493 0.83 +0.4
511,517 + +1.4
511,517 + -2.0
511,517 + +1.8
511,525 - -0.0
511,525 - +1.2
511,526 + +1.3
511,585 - -0.3
511,585 - +3.4
511,981 - -0.2
512,003 + +3.6
512,037 + +3.7
512,037 + +2.6
512,053 - +1.8
512,055 - +0.4
512,077 + +3.9
512,088 + +3.0
512,099 + +1.3
512,105 + +1.5
512,135 - CCNA_00495 0.22 +2.8
512,145 + CCNA_00495 0.25 +1.3
512,145 + CCNA_00495 0.25 +0.3
512,157 + CCNA_00495 0.30 +0.8
512,162 + CCNA_00495 0.32 +0.2
512,162 + CCNA_00495 0.32 +0.2
512,162 + CCNA_00495 0.32 +1.8
512,170 - CCNA_00495 0.35 +1.8
512,177 + CCNA_00495 0.38 +1.7
512,177 + CCNA_00495 0.38 -0.6
512,177 + CCNA_00495 0.38 +0.9
512,185 - CCNA_00495 0.41 +1.2
512,185 - CCNA_00495 0.41 +2.8
512,205 + CCNA_00495 0.49 -0.9
512,217 + +1.2
512,225 - CCNA_00495 0.57 -0.6

Or see this region's nucleotide sequence