Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00491

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00490 and CCNA_00491 are separated by 147 nucleotidesCCNA_00491 and CCNA_00492 are separated by 195 nucleotides CCNA_00490: CCNA_00490 - hypothetical protein, at 507,838 to 508,722 _00490 CCNA_00491: CCNA_00491 - GTP cyclohydrolase I, at 508,870 to 509,508 _00491 CCNA_00492: CCNA_00492 - cysteinyl-tRNA synthetase, at 509,704 to 511,095 _00492 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2 3at 507.888 kb on + strandat 507.888 kb on + strandat 507.896 kb on - strandat 507.950 kb on + strand, within CCNA_00490at 507.950 kb on + strand, within CCNA_00490at 507.958 kb on - strand, within CCNA_00490at 507.960 kb on + strand, within CCNA_00490at 507.960 kb on + strand, within CCNA_00490at 507.960 kb on + strand, within CCNA_00490at 507.960 kb on + strand, within CCNA_00490at 507.960 kb on + strand, within CCNA_00490at 507.968 kb on - strand, within CCNA_00490at 507.968 kb on - strand, within CCNA_00490at 507.968 kb on - strand, within CCNA_00490at 507.983 kb on + strand, within CCNA_00490at 507.987 kb on + strand, within CCNA_00490at 508.007 kb on + strand, within CCNA_00490at 508.010 kb on - strand, within CCNA_00490at 508.015 kb on - strand, within CCNA_00490at 508.017 kb on + strand, within CCNA_00490at 508.017 kb on + strand, within CCNA_00490at 508.017 kb on + strand, within CCNA_00490at 508.017 kb on + strand, within CCNA_00490at 508.017 kb on + strand, within CCNA_00490at 508.025 kb on - strand, within CCNA_00490at 508.025 kb on - strand, within CCNA_00490at 508.025 kb on - strand, within CCNA_00490at 508.025 kb on - strand, within CCNA_00490at 508.025 kb on - strand, within CCNA_00490at 508.045 kb on + strand, within CCNA_00490at 508.110 kb on + strand, within CCNA_00490at 508.160 kb on + strand, within CCNA_00490at 508.160 kb on + strand, within CCNA_00490at 508.167 kb on - strand, within CCNA_00490at 508.168 kb on - strand, within CCNA_00490at 508.168 kb on - strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.170 kb on + strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.178 kb on - strand, within CCNA_00490at 508.206 kb on + strand, within CCNA_00490at 508.206 kb on + strand, within CCNA_00490at 508.214 kb on - strand, within CCNA_00490at 508.214 kb on - strand, within CCNA_00490at 508.246 kb on + strand, within CCNA_00490at 508.247 kb on + strand, within CCNA_00490at 508.247 kb on - strand, within CCNA_00490at 508.252 kb on + strand, within CCNA_00490at 508.257 kb on + strand, within CCNA_00490at 508.271 kb on + strand, within CCNA_00490at 508.271 kb on + strand, within CCNA_00490at 508.292 kb on - strand, within CCNA_00490at 508.292 kb on - strand, within CCNA_00490at 508.296 kb on + strand, within CCNA_00490at 508.326 kb on + strand, within CCNA_00490at 508.331 kb on + strand, within CCNA_00490at 508.334 kb on - strand, within CCNA_00490at 508.334 kb on - strand, within CCNA_00490at 508.336 kb on + strand, within CCNA_00490at 508.336 kb on + strand, within CCNA_00490at 508.341 kb on + strand, within CCNA_00490at 508.341 kb on + strand, within CCNA_00490at 508.349 kb on - strand, within CCNA_00490at 508.351 kb on + strand, within CCNA_00490at 508.351 kb on + strand, within CCNA_00490at 508.351 kb on + strand, within CCNA_00490at 508.378 kb on - strand, within CCNA_00490at 508.380 kb on + strand, within CCNA_00490at 508.383 kb on + strand, within CCNA_00490at 508.383 kb on + strand, within CCNA_00490at 508.408 kb on - strand, within CCNA_00490at 508.429 kb on - strand, within CCNA_00490at 508.440 kb on + strand, within CCNA_00490at 508.457 kb on + strand, within CCNA_00490at 508.457 kb on + strand, within CCNA_00490at 508.457 kb on + strand, within CCNA_00490at 508.462 kb on + strand, within CCNA_00490at 508.463 kb on + strand, within CCNA_00490at 508.465 kb on - strand, within CCNA_00490at 508.465 kb on - strand, within CCNA_00490at 508.465 kb on - strand, within CCNA_00490at 508.476 kb on + strand, within CCNA_00490at 508.484 kb on - strand, within CCNA_00490at 508.484 kb on - strand, within CCNA_00490at 508.499 kb on - strand, within CCNA_00490at 508.499 kb on - strand, within CCNA_00490at 508.499 kb on - strand, within CCNA_00490at 508.501 kb on + strand, within CCNA_00490at 508.513 kb on + strand, within CCNA_00490at 508.544 kb on + strand, within CCNA_00490at 508.561 kb on - strand, within CCNA_00490at 508.562 kb on - strand, within CCNA_00490at 508.563 kb on - strand, within CCNA_00490at 508.563 kb on - strand, within CCNA_00490at 508.563 kb on - strand, within CCNA_00490at 508.563 kb on - strand, within CCNA_00490at 508.565 kb on + strand, within CCNA_00490at 508.565 kb on + strand, within CCNA_00490at 508.565 kb on + strand, within CCNA_00490at 508.568 kb on - strand, within CCNA_00490at 508.573 kb on - strand, within CCNA_00490at 508.607 kb on - strand, within CCNA_00490at 508.640 kb on + strandat 508.657 kb on - strandat 508.672 kb on + strandat 508.677 kb on + strandat 508.677 kb on + strandat 508.677 kb on + strandat 508.677 kb on + strandat 508.677 kb on + strandat 508.680 kb on - strandat 508.680 kb on - strandat 508.680 kb on - strandat 508.685 kb on - strandat 508.685 kb on - strandat 508.685 kb on - strandat 508.685 kb on - strandat 508.687 kb on - strandat 508.712 kb on - strandat 508.717 kb on + strandat 508.717 kb on + strandat 508.724 kb on - strandat 508.725 kb on - strandat 508.729 kb on + strandat 508.729 kb on + strandat 508.729 kb on + strandat 508.737 kb on - strandat 508.737 kb on - strandat 508.737 kb on - strandat 508.762 kb on - strandat 508.771 kb on + strandat 508.771 kb on + strandat 508.771 kb on + strandat 508.771 kb on + strandat 508.779 kb on - strandat 508.779 kb on - strandat 508.779 kb on - strandat 508.791 kb on - strandat 508.791 kb on - strandat 508.798 kb on - strandat 508.808 kb on + strandat 508.816 kb on - strandat 508.831 kb on - strandat 508.834 kb on + strandat 508.842 kb on - strandat 508.867 kb on - strandat 508.879 kb on + strandat 509.557 kb on + strandat 509.652 kb on - strandat 509.652 kb on - strandat 509.655 kb on - strandat 509.668 kb on + strandat 509.668 kb on + strandat 509.668 kb on + strandat 509.676 kb on + strandat 509.676 kb on + strandat 509.709 kb on - strandat 509.709 kb on - strandat 509.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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507,888 + -1.1
507,888 + +1.2
507,896 - +2.8
507,950 + CCNA_00490 0.13 +1.8
507,950 + CCNA_00490 0.13 +0.1
507,958 - CCNA_00490 0.14 +0.2
507,960 + CCNA_00490 0.14 -0.4
507,960 + CCNA_00490 0.14 -1.3
507,960 + CCNA_00490 0.14 -2.5
507,960 + CCNA_00490 0.14 +0.4
507,960 + CCNA_00490 0.14 +0.2
507,968 - CCNA_00490 0.15 -0.7
507,968 - CCNA_00490 0.15 +1.8
507,968 - CCNA_00490 0.15 +1.2
507,983 + CCNA_00490 0.16 -0.0
507,987 + CCNA_00490 0.17 -1.0
508,007 + CCNA_00490 0.19 +1.8
508,010 - CCNA_00490 0.19 +2.8
508,015 - CCNA_00490 0.20 -0.7
508,017 + CCNA_00490 0.20 +0.2
508,017 + CCNA_00490 0.20 -0.2
508,017 + CCNA_00490 0.20 -0.2
508,017 + CCNA_00490 0.20 +2.8
508,017 + CCNA_00490 0.20 -0.2
508,025 - CCNA_00490 0.21 -0.6
508,025 - CCNA_00490 0.21 +1.2
508,025 - CCNA_00490 0.21 +0.2
508,025 - CCNA_00490 0.21 +0.8
508,025 - CCNA_00490 0.21 -1.3
508,045 + CCNA_00490 0.23 -0.2
508,110 + CCNA_00490 0.31 -0.9
508,160 + CCNA_00490 0.36 -0.4
508,160 + CCNA_00490 0.36 +0.2
508,167 - CCNA_00490 0.37 +0.8
508,168 - CCNA_00490 0.37 +1.8
508,168 - CCNA_00490 0.37 -1.0
508,170 + CCNA_00490 0.38 +0.4
508,170 + CCNA_00490 0.38 -0.9
508,170 + CCNA_00490 0.38 -1.6
508,170 + CCNA_00490 0.38 -0.4
508,170 + CCNA_00490 0.38 -0.5
508,170 + CCNA_00490 0.38 +1.0
508,170 + CCNA_00490 0.38 -0.8
508,170 + CCNA_00490 0.38 +1.8
508,170 + CCNA_00490 0.38 +0.8
508,170 + CCNA_00490 0.38 +2.8
508,170 + CCNA_00490 0.38 -1.0
508,170 + CCNA_00490 0.38 -0.4
508,178 - CCNA_00490 0.38 -0.0
508,178 - CCNA_00490 0.38 -1.5
508,178 - CCNA_00490 0.38 +1.8
508,178 - CCNA_00490 0.38 -0.2
508,178 - CCNA_00490 0.38 +0.8
508,178 - CCNA_00490 0.38 -0.7
508,178 - CCNA_00490 0.38 +0.8
508,178 - CCNA_00490 0.38 +0.2
508,178 - CCNA_00490 0.38 +2.8
508,178 - CCNA_00490 0.38 -0.6
508,178 - CCNA_00490 0.38 +0.8
508,206 + CCNA_00490 0.42 -0.6
508,206 + CCNA_00490 0.42 -1.9
508,214 - CCNA_00490 0.42 +1.8
508,214 - CCNA_00490 0.42 +0.8
508,246 + CCNA_00490 0.46 -1.8
508,247 + CCNA_00490 0.46 +1.4
508,247 - CCNA_00490 0.46 -0.6
508,252 + CCNA_00490 0.47 +1.2
508,257 + CCNA_00490 0.47 -0.0
508,271 + CCNA_00490 0.49 -0.0
508,271 + CCNA_00490 0.49 +0.2
508,292 - CCNA_00490 0.51 +1.8
508,292 - CCNA_00490 0.51 +2.8
508,296 + CCNA_00490 0.52 -0.0
508,326 + CCNA_00490 0.55 -2.0
508,331 + CCNA_00490 0.56 -1.1
508,334 - CCNA_00490 0.56 +1.8
508,334 - CCNA_00490 0.56 -0.0
508,336 + CCNA_00490 0.56 +0.8
508,336 + CCNA_00490 0.56 -0.2
508,341 + CCNA_00490 0.57 +0.8
508,341 + CCNA_00490 0.57 +1.2
508,349 - CCNA_00490 0.58 +0.2
508,351 + CCNA_00490 0.58 -0.5
508,351 + CCNA_00490 0.58 -0.2
508,351 + CCNA_00490 0.58 +0.3
508,378 - CCNA_00490 0.61 +1.8
508,380 + CCNA_00490 0.61 -0.6
508,383 + CCNA_00490 0.62 -0.8
508,383 + CCNA_00490 0.62 +2.0
508,408 - CCNA_00490 0.64 -0.7
508,429 - CCNA_00490 0.67 +1.8
508,440 + CCNA_00490 0.68 +1.5
508,457 + CCNA_00490 0.70 -1.3
508,457 + CCNA_00490 0.70 +0.8
508,457 + CCNA_00490 0.70 -0.6
508,462 + CCNA_00490 0.71 +1.8
508,463 + CCNA_00490 0.71 -0.0
508,465 - CCNA_00490 0.71 +1.2
508,465 - CCNA_00490 0.71 +1.2
508,465 - CCNA_00490 0.71 +0.1
508,476 + CCNA_00490 0.72 +1.0
508,484 - CCNA_00490 0.73 -0.6
508,484 - CCNA_00490 0.73 -0.7
508,499 - CCNA_00490 0.75 +1.0
508,499 - CCNA_00490 0.75 +1.2
508,499 - CCNA_00490 0.75 -1.9
508,501 + CCNA_00490 0.75 +0.3
508,513 + CCNA_00490 0.76 -0.4
508,544 + CCNA_00490 0.80 +1.3
508,561 - CCNA_00490 0.82 -0.8
508,562 - CCNA_00490 0.82 +0.8
508,563 - CCNA_00490 0.82 -1.2
508,563 - CCNA_00490 0.82 -0.2
508,563 - CCNA_00490 0.82 -1.0
508,563 - CCNA_00490 0.82 -0.4
508,565 + CCNA_00490 0.82 -0.5
508,565 + CCNA_00490 0.82 +0.5
508,565 + CCNA_00490 0.82 -0.9
508,568 - CCNA_00490 0.82 +0.2
508,573 - CCNA_00490 0.83 +0.4
508,607 - CCNA_00490 0.87 -0.4
508,640 + -1.2
508,657 - -0.4
508,672 + +0.0
508,677 + -1.1
508,677 + -0.5
508,677 + +1.2
508,677 + +0.6
508,677 + +0.4
508,680 - +1.8
508,680 - +1.2
508,680 - +0.8
508,685 - +0.2
508,685 - +1.8
508,685 - +1.2
508,685 - +0.2
508,687 - +0.8
508,712 - -0.4
508,717 + +1.2
508,717 + +1.1
508,724 - +2.8
508,725 - +0.4
508,729 + -0.0
508,729 + +0.6
508,729 + -0.2
508,737 - +1.2
508,737 - +2.0
508,737 - -0.5
508,762 - +0.4
508,771 + +0.4
508,771 + -0.1
508,771 + +0.4
508,771 + +0.9
508,779 - +2.4
508,779 - +1.8
508,779 - +0.1
508,791 - -0.2
508,791 - +0.3
508,798 - -0.2
508,808 + -0.2
508,816 - +0.8
508,831 - +1.4
508,834 + +0.4
508,842 - +2.0
508,867 - +1.3
508,879 + +1.2
509,557 + +1.2
509,652 - -0.7
509,652 - -1.6
509,655 - +0.6
509,668 + +0.8
509,668 + +0.4
509,668 + +1.4
509,676 + -1.0
509,676 + +0.6
509,709 - +1.2
509,709 - +0.8
509,709 - +0.2

Or see this region's nucleotide sequence