Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00441

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00439 and CCNA_00440 overlap by 1 nucleotidesCCNA_00440 and CCNA_00441 overlap by 4 nucleotidesCCNA_00441 and CCNA_00442 are separated by 69 nucleotides CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518 _00439 CCNA_00440: CCNA_00440 - STAS domain protein, at 447,518 to 447,805 _00440 CCNA_00441: CCNA_00441 - chemotaxis receiver domain protein cheYI, at 447,802 to 448,167 _00441 CCNA_00442: CCNA_00442 - chemotaxis histidine kinase protein cheAI, at 448,237 to 450,525 _00442 Position (kb) 447 448 449Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 446.822 kb on - strand, within CCNA_00439at 446.824 kb on + strand, within CCNA_00439at 446.829 kb on + strand, within CCNA_00439at 446.837 kb on - strand, within CCNA_00439at 446.847 kb on + strand, within CCNA_00439at 446.862 kb on + strand, within CCNA_00439at 446.865 kb on - strand, within CCNA_00439at 446.865 kb on - strand, within CCNA_00439at 446.887 kb on - strand, within CCNA_00439at 446.944 kb on - strand, within CCNA_00439at 446.951 kb on + strand, within CCNA_00439at 446.968 kb on - strand, within CCNA_00439at 446.994 kb on + strand, within CCNA_00439at 446.994 kb on + strand, within CCNA_00439at 446.994 kb on + strand, within CCNA_00439at 447.002 kb on - strand, within CCNA_00439at 447.006 kb on + strand, within CCNA_00439at 447.033 kb on - strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.035 kb on + strand, within CCNA_00439at 447.042 kb on + strand, within CCNA_00439at 447.043 kb on - strand, within CCNA_00439at 447.043 kb on - strand, within CCNA_00439at 447.050 kb on + strand, within CCNA_00439at 447.147 kb on + strand, within CCNA_00439at 447.183 kb on - strand, within CCNA_00439at 447.185 kb on + strand, within CCNA_00439at 447.192 kb on + strand, within CCNA_00439at 447.192 kb on + strand, within CCNA_00439at 447.200 kb on - strand, within CCNA_00439at 447.206 kb on + strand, within CCNA_00439at 447.231 kb on - strand, within CCNA_00439at 447.274 kb on - strand, within CCNA_00439at 447.274 kb on - strand, within CCNA_00439at 447.301 kb on - strand, within CCNA_00439at 447.309 kb on - strand, within CCNA_00439at 447.328 kb on + strandat 447.328 kb on + strandat 447.340 kb on + strandat 447.353 kb on + strandat 447.362 kb on - strandat 447.373 kb on + strandat 447.384 kb on + strandat 447.389 kb on + strandat 447.420 kb on + strandat 447.453 kb on + strandat 447.456 kb on - strandat 447.485 kb on + strandat 447.615 kb on - strand, within CCNA_00440at 447.621 kb on - strand, within CCNA_00440at 447.623 kb on + strand, within CCNA_00440at 447.659 kb on + strand, within CCNA_00440at 447.667 kb on - strand, within CCNA_00440at 447.680 kb on + strand, within CCNA_00440at 447.695 kb on + strand, within CCNA_00440at 447.722 kb on + strand, within CCNA_00440at 447.729 kb on + strand, within CCNA_00440at 447.767 kb on - strand, within CCNA_00440at 447.849 kb on - strand, within CCNA_00441at 447.878 kb on + strand, within CCNA_00441at 447.884 kb on + strand, within CCNA_00441at 447.896 kb on - strand, within CCNA_00441at 447.903 kb on - strand, within CCNA_00441at 447.904 kb on + strand, within CCNA_00441at 447.922 kb on + strand, within CCNA_00441at 447.922 kb on - strand, within CCNA_00441at 447.938 kb on + strand, within CCNA_00441at 447.938 kb on + strand, within CCNA_00441at 447.938 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.983 kb on + strand, within CCNA_00441at 447.993 kb on + strand, within CCNA_00441at 448.017 kb on + strand, within CCNA_00441at 448.037 kb on + strand, within CCNA_00441at 448.097 kb on + strand, within CCNA_00441at 448.142 kb on + strandat 448.162 kb on + strandat 448.162 kb on + strandat 448.162 kb on + strandat 448.181 kb on + strandat 448.181 kb on + strandat 448.181 kb on + strandat 448.181 kb on + strandat 448.183 kb on + strandat 448.189 kb on - strandat 448.189 kb on - strandat 448.212 kb on - strandat 448.220 kb on + strandat 448.228 kb on - strandat 448.244 kb on + strandat 448.244 kb on + strandat 448.253 kb on + strandat 448.254 kb on + strandat 448.254 kb on + strandat 448.260 kb on + strandat 448.299 kb on + strandat 448.307 kb on - strandat 448.312 kb on + strandat 448.320 kb on - strandat 448.340 kb on + strandat 448.362 kb on + strandat 448.365 kb on - strandat 448.365 kb on - strandat 448.370 kb on - strandat 448.414 kb on - strandat 448.455 kb on - strandat 448.457 kb on + strandat 448.482 kb on - strand, within CCNA_00442at 448.536 kb on + strand, within CCNA_00442at 448.544 kb on - strand, within CCNA_00442at 448.544 kb on - strand, within CCNA_00442at 448.544 kb on - strand, within CCNA_00442at 448.561 kb on + strand, within CCNA_00442at 448.582 kb on + strand, within CCNA_00442at 448.597 kb on + strand, within CCNA_00442at 448.685 kb on + strand, within CCNA_00442at 448.685 kb on + strand, within CCNA_00442at 448.690 kb on + strand, within CCNA_00442at 448.695 kb on + strand, within CCNA_00442at 448.698 kb on - strand, within CCNA_00442at 448.724 kb on + strand, within CCNA_00442at 448.763 kb on + strand, within CCNA_00442at 448.784 kb on + strand, within CCNA_00442at 448.785 kb on + strand, within CCNA_00442at 448.789 kb on + strand, within CCNA_00442at 448.789 kb on + strand, within CCNA_00442at 448.806 kb on + strand, within CCNA_00442at 448.806 kb on + strand, within CCNA_00442at 448.806 kb on + strand, within CCNA_00442at 448.806 kb on + strand, within CCNA_00442at 448.806 kb on + strand, within CCNA_00442at 448.806 kb on + strand, within CCNA_00442at 448.814 kb on - strand, within CCNA_00442at 448.814 kb on - strand, within CCNA_00442at 448.814 kb on - strand, within CCNA_00442at 448.814 kb on - strand, within CCNA_00442at 448.814 kb on - strand, within CCNA_00442at 448.832 kb on + strand, within CCNA_00442at 448.899 kb on + strand, within CCNA_00442at 448.907 kb on - strand, within CCNA_00442at 448.920 kb on - strand, within CCNA_00442at 448.968 kb on - strand, within CCNA_00442at 448.983 kb on + strand, within CCNA_00442at 448.983 kb on + strand, within CCNA_00442at 449.003 kb on + strand, within CCNA_00442at 449.020 kb on + strand, within CCNA_00442at 449.050 kb on + strand, within CCNA_00442at 449.075 kb on + strand, within CCNA_00442at 449.077 kb on + strand, within CCNA_00442at 449.077 kb on + strand, within CCNA_00442at 449.103 kb on - strand, within CCNA_00442

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
446,822 - CCNA_00439 0.66 -1.6
446,824 + CCNA_00439 0.66 +3.2
446,829 + CCNA_00439 0.66 +3.1
446,837 - CCNA_00439 0.66 -0.2
446,847 + CCNA_00439 0.67 +1.5
446,862 + CCNA_00439 0.68 +2.4
446,865 - CCNA_00439 0.68 -0.6
446,865 - CCNA_00439 0.68 -0.0
446,887 - CCNA_00439 0.69 +1.0
446,944 - CCNA_00439 0.72 -0.7
446,951 + CCNA_00439 0.72 +2.3
446,968 - CCNA_00439 0.73 -0.6
446,994 + CCNA_00439 0.74 +2.0
446,994 + CCNA_00439 0.74 +3.6
446,994 + CCNA_00439 0.74 +1.7
447,002 - CCNA_00439 0.74 -0.9
447,006 + CCNA_00439 0.75 +1.2
447,033 - CCNA_00439 0.76 +2.5
447,035 + CCNA_00439 0.76 +2.4
447,035 + CCNA_00439 0.76 +3.0
447,035 + CCNA_00439 0.76 +2.3
447,035 + CCNA_00439 0.76 +2.5
447,042 + CCNA_00439 0.76 +1.0
447,043 - CCNA_00439 0.76 -0.9
447,043 - CCNA_00439 0.76 -1.5
447,050 + CCNA_00439 0.77 +2.7
447,147 + CCNA_00439 0.82 +2.4
447,183 - CCNA_00439 0.83 -1.2
447,185 + CCNA_00439 0.83 +3.2
447,192 + CCNA_00439 0.84 +3.0
447,192 + CCNA_00439 0.84 +2.8
447,200 - CCNA_00439 0.84 -0.8
447,206 + CCNA_00439 0.85 +3.0
447,231 - CCNA_00439 0.86 -0.2
447,274 - CCNA_00439 0.88 +1.6
447,274 - CCNA_00439 0.88 -0.4
447,301 - CCNA_00439 0.89 -0.2
447,309 - CCNA_00439 0.90 -0.2
447,328 + +2.8
447,328 + +2.7
447,340 + +4.0
447,353 + +3.7
447,362 - -0.8
447,373 + +2.7
447,384 + +3.3
447,389 + +2.4
447,420 + +2.0
447,453 + +2.8
447,456 - -1.1
447,485 + +3.2
447,615 - CCNA_00440 0.34 +0.6
447,621 - CCNA_00440 0.36 -1.8
447,623 + CCNA_00440 0.36 +3.3
447,659 + CCNA_00440 0.49 +2.9
447,667 - CCNA_00440 0.52 -1.7
447,680 + CCNA_00440 0.56 +3.4
447,695 + CCNA_00440 0.61 +3.0
447,722 + CCNA_00440 0.71 +2.8
447,729 + CCNA_00440 0.73 +2.1
447,767 - CCNA_00440 0.86 -1.6
447,849 - CCNA_00441 0.13 -0.2
447,878 + CCNA_00441 0.21 +2.6
447,884 + CCNA_00441 0.22 +2.3
447,896 - CCNA_00441 0.26 -1.3
447,903 - CCNA_00441 0.28 -0.2
447,904 + CCNA_00441 0.28 +3.2
447,922 + CCNA_00441 0.33 +2.5
447,922 - CCNA_00441 0.33 +0.0
447,938 + CCNA_00441 0.37 +1.8
447,938 + CCNA_00441 0.37 +2.6
447,938 + CCNA_00441 0.37 +2.5
447,983 + CCNA_00441 0.49 +3.1
447,983 + CCNA_00441 0.49 +2.8
447,983 + CCNA_00441 0.49 +3.1
447,983 + CCNA_00441 0.49 +3.4
447,993 + CCNA_00441 0.52 +2.3
448,017 + CCNA_00441 0.59 +3.3
448,037 + CCNA_00441 0.64 +3.1
448,097 + CCNA_00441 0.81 +1.9
448,142 + +3.1
448,162 + +2.7
448,162 + +2.9
448,162 + +2.7
448,181 + +2.8
448,181 + +2.7
448,181 + +1.4
448,181 + +2.6
448,183 + +2.7
448,189 - -1.1
448,189 - +1.6
448,212 - -1.0
448,220 + +3.0
448,228 - +0.0
448,244 + +3.0
448,244 + +3.2
448,253 + +3.0
448,254 + +2.9
448,254 + +2.9
448,260 + +3.0
448,299 + +2.7
448,307 - +1.6
448,312 + +2.8
448,320 - -0.4
448,340 + +2.6
448,362 + +2.8
448,365 - -0.2
448,365 - -1.9
448,370 - -1.1
448,414 - +2.6
448,455 - -0.7
448,457 + +3.4
448,482 - CCNA_00442 0.11 +0.6
448,536 + CCNA_00442 0.13 +2.8
448,544 - CCNA_00442 0.13 -0.6
448,544 - CCNA_00442 0.13 +1.3
448,544 - CCNA_00442 0.13 -1.2
448,561 + CCNA_00442 0.14 +2.5
448,582 + CCNA_00442 0.15 +2.6
448,597 + CCNA_00442 0.16 +3.0
448,685 + CCNA_00442 0.20 +1.3
448,685 + CCNA_00442 0.20 +2.8
448,690 + CCNA_00442 0.20 +2.3
448,695 + CCNA_00442 0.20 +2.5
448,698 - CCNA_00442 0.20 +0.3
448,724 + CCNA_00442 0.21 +2.9
448,763 + CCNA_00442 0.23 +2.0
448,784 + CCNA_00442 0.24 +2.7
448,785 + CCNA_00442 0.24 +1.3
448,789 + CCNA_00442 0.24 +0.8
448,789 + CCNA_00442 0.24 +2.2
448,806 + CCNA_00442 0.25 +1.1
448,806 + CCNA_00442 0.25 +1.7
448,806 + CCNA_00442 0.25 +1.8
448,806 + CCNA_00442 0.25 +1.8
448,806 + CCNA_00442 0.25 +1.7
448,806 + CCNA_00442 0.25 +2.3
448,814 - CCNA_00442 0.25 -0.7
448,814 - CCNA_00442 0.25 -2.1
448,814 - CCNA_00442 0.25 +0.3
448,814 - CCNA_00442 0.25 +1.6
448,814 - CCNA_00442 0.25 +0.3
448,832 + CCNA_00442 0.26 +1.6
448,899 + CCNA_00442 0.29 +1.4
448,907 - CCNA_00442 0.29 -0.6
448,920 - CCNA_00442 0.30 +1.6
448,968 - CCNA_00442 0.32 -1.3
448,983 + CCNA_00442 0.33 +2.1
448,983 + CCNA_00442 0.33 +1.8
449,003 + CCNA_00442 0.33 +2.6
449,020 + CCNA_00442 0.34 +2.3
449,050 + CCNA_00442 0.36 +2.3
449,075 + CCNA_00442 0.37 +2.3
449,077 + CCNA_00442 0.37 +2.0
449,077 + CCNA_00442 0.37 +2.7
449,103 - CCNA_00442 0.38 +1.0

Or see this region's nucleotide sequence