Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00426

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00424 and CCNA_00425 are separated by 72 nucleotidesCCNA_00425 and CCNA_00426 are separated by 450 nucleotidesCCNA_00426 and CCNA_00427 are separated by 68 nucleotidesCCNA_00427 and CCNA_00428 overlap by 1 nucleotidesCCNA_00428 and CCNA_00429 are separated by 54 nucleotidesCCNA_00429 and CCNA_00430 are separated by 5 nucleotidesCCNA_00430 and CCNA_00431 are separated by 19 nucleotides CCNA_00424: CCNA_00424 - aldehyde dehydrogenase, at 434,121 to 435,560 _00424 CCNA_00425: CCNA_00425 - hypothetical protein, at 435,633 to 436,094 _00425 CCNA_00426: CCNA_00426 - very-short-patch-repair endonuclease, at 436,545 to 436,889 _00426 CCNA_00427: CCNA_00427 - hypothetical protein, at 436,958 to 437,146 _00427 CCNA_00428: CCNA_00428 - hypothetical protein, at 437,146 to 437,328 _00428 CCNA_00429: CCNA_00429 - hypothetical protein, at 437,383 to 437,550 _00429 CCNA_00430: CCNA_00430 - hypothetical protein, at 437,556 to 437,741 _00430 CCNA_00431: CCNA_00431 - hypothetical protein, at 437,761 to 437,883 _00431 Position (kb) 436 437Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 435.555 kb on + strandat 435.584 kb on + strandat 435.592 kb on - strandat 435.594 kb on + strandat 435.594 kb on + strandat 435.602 kb on - strandat 435.602 kb on - strandat 435.602 kb on - strandat 435.602 kb on - strandat 435.637 kb on - strandat 435.668 kb on - strandat 435.912 kb on + strand, within CCNA_00425at 435.912 kb on + strand, within CCNA_00425at 435.912 kb on + strand, within CCNA_00425at 435.920 kb on - strand, within CCNA_00425at 435.982 kb on + strand, within CCNA_00425at 436.035 kb on + strand, within CCNA_00425at 436.104 kb on + strandat 436.141 kb on + strandat 436.142 kb on - strandat 436.151 kb on + strandat 436.174 kb on - strandat 436.174 kb on - strandat 436.179 kb on - strandat 436.179 kb on - strandat 436.181 kb on + strandat 436.186 kb on + strandat 436.189 kb on - strandat 436.194 kb on - strandat 436.230 kb on + strandat 436.238 kb on - strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.240 kb on + strandat 436.248 kb on - strandat 436.280 kb on + strandat 436.326 kb on + strandat 436.334 kb on - strandat 436.334 kb on - strandat 436.346 kb on - strandat 436.351 kb on + strandat 436.359 kb on - strandat 436.359 kb on - strandat 436.401 kb on + strandat 436.423 kb on + strandat 436.464 kb on + strandat 436.465 kb on - strandat 436.466 kb on - strandat 436.472 kb on - strandat 436.472 kb on - strandat 436.549 kb on - strandat 436.564 kb on + strandat 436.572 kb on - strandat 436.586 kb on + strand, within CCNA_00426at 436.589 kb on - strand, within CCNA_00426at 436.596 kb on - strand, within CCNA_00426at 436.616 kb on + strand, within CCNA_00426at 436.624 kb on - strand, within CCNA_00426at 436.638 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.647 kb on - strand, within CCNA_00426at 436.648 kb on - strand, within CCNA_00426at 436.648 kb on - strand, within CCNA_00426at 436.721 kb on + strand, within CCNA_00426at 436.739 kb on - strand, within CCNA_00426at 436.784 kb on - strand, within CCNA_00426at 436.797 kb on + strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.805 kb on - strand, within CCNA_00426at 436.820 kb on + strand, within CCNA_00426at 436.821 kb on + strand, within CCNA_00426at 436.848 kb on - strand, within CCNA_00426at 436.884 kb on + strandat 436.918 kb on + strandat 436.920 kb on + strandat 436.926 kb on - strandat 436.943 kb on + strandat 436.950 kb on - strandat 436.999 kb on + strand, within CCNA_00427at 436.999 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.059 kb on + strand, within CCNA_00427at 437.066 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.067 kb on - strand, within CCNA_00427at 437.082 kb on + strand, within CCNA_00427at 437.121 kb on + strand, within CCNA_00427at 437.128 kb on + strandat 437.129 kb on - strandat 437.129 kb on - strandat 437.136 kb on - strandat 437.184 kb on + strand, within CCNA_00428at 437.189 kb on + strand, within CCNA_00428at 437.197 kb on - strand, within CCNA_00428at 437.205 kb on + strand, within CCNA_00428at 437.205 kb on + strand, within CCNA_00428at 437.215 kb on + strand, within CCNA_00428at 437.232 kb on + strand, within CCNA_00428at 437.240 kb on - strand, within CCNA_00428at 437.242 kb on - strand, within CCNA_00428at 437.242 kb on - strand, within CCNA_00428at 437.246 kb on + strand, within CCNA_00428at 437.247 kb on - strand, within CCNA_00428at 437.256 kb on + strand, within CCNA_00428at 437.256 kb on + strand, within CCNA_00428at 437.264 kb on - strand, within CCNA_00428at 437.271 kb on + strand, within CCNA_00428at 437.271 kb on + strand, within CCNA_00428at 437.278 kb on + strand, within CCNA_00428at 437.279 kb on - strand, within CCNA_00428at 437.279 kb on - strand, within CCNA_00428at 437.298 kb on - strand, within CCNA_00428at 437.303 kb on + strand, within CCNA_00428at 437.303 kb on + strand, within CCNA_00428at 437.311 kb on - strandat 437.311 kb on - strandat 437.377 kb on + strandat 437.415 kb on - strand, within CCNA_00429at 437.457 kb on + strand, within CCNA_00429at 437.458 kb on + strand, within CCNA_00429at 437.491 kb on + strand, within CCNA_00429at 437.499 kb on - strand, within CCNA_00429at 437.582 kb on + strand, within CCNA_00430at 437.582 kb on + strandat 437.606 kb on + strand, within CCNA_00430at 437.606 kb on + strand, within CCNA_00430at 437.614 kb on - strand, within CCNA_00430at 437.614 kb on - strand, within CCNA_00430at 437.685 kb on + strand, within CCNA_00430at 437.700 kb on - strand, within CCNA_00430at 437.723 kb on - strandat 437.723 kb on - strandat 437.723 kb on - strandat 437.723 kb on - strandat 437.723 kb on - strandat 437.728 kb on - strandat 437.765 kb on + strandat 437.777 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.779 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.789 kb on + strand, within CCNA_00431at 437.807 kb on + strand, within CCNA_00431at 437.860 kb on - strand, within CCNA_00431at 437.860 kb on - strand, within CCNA_00431at 437.860 kb on - strandat 437.860 kb on - strand, within CCNA_00431at 437.865 kb on - strand, within CCNA_00431

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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435,555 + +0.3
435,584 + +1.6
435,592 - -1.6
435,594 + +1.2
435,594 + +1.6
435,602 - +0.9
435,602 - +3.5
435,602 - +1.4
435,602 - +1.5
435,637 - +2.5
435,668 - -0.1
435,912 + CCNA_00425 0.60 -0.2
435,912 + CCNA_00425 0.60 +0.2
435,912 + CCNA_00425 0.60 -2.0
435,920 - CCNA_00425 0.62 +0.5
435,982 + CCNA_00425 0.76 -3.7
436,035 + CCNA_00425 0.87 -0.8
436,104 + +1.5
436,141 + +0.1
436,142 - -0.5
436,151 + -0.8
436,174 - -0.6
436,174 - -1.6
436,179 - +0.8
436,179 - +1.0
436,181 + +0.2
436,186 + -0.8
436,189 - -0.3
436,194 - +0.9
436,230 + -0.3
436,238 - -0.8
436,240 + -0.5
436,240 + +1.1
436,240 + -0.6
436,240 + +0.7
436,248 - -0.5
436,280 + +0.3
436,326 + +0.8
436,334 - -0.6
436,334 - +0.5
436,346 - -3.0
436,351 + +0.2
436,359 - +2.3
436,359 - -1.0
436,401 + -0.9
436,423 + +1.8
436,464 + +0.5
436,465 - +0.2
436,466 - -2.2
436,472 - -1.2
436,472 - -0.4
436,549 - +1.3
436,564 + -0.2
436,572 - -0.2
436,586 + CCNA_00426 0.12 -0.5
436,589 - CCNA_00426 0.13 -3.3
436,596 - CCNA_00426 0.15 -0.5
436,616 + CCNA_00426 0.21 -1.4
436,624 - CCNA_00426 0.23 +0.5
436,638 - CCNA_00426 0.27 +0.2
436,647 - CCNA_00426 0.30 -0.3
436,647 - CCNA_00426 0.30 -0.7
436,648 - CCNA_00426 0.30 -0.5
436,648 - CCNA_00426 0.30 +2.5
436,721 + CCNA_00426 0.51 -1.0
436,739 - CCNA_00426 0.56 -2.1
436,784 - CCNA_00426 0.69 -1.7
436,797 + CCNA_00426 0.73 +0.3
436,805 - CCNA_00426 0.75 -0.8
436,805 - CCNA_00426 0.75 +0.2
436,805 - CCNA_00426 0.75 +1.5
436,805 - CCNA_00426 0.75 -1.1
436,820 + CCNA_00426 0.80 -1.5
436,821 + CCNA_00426 0.80 +2.5
436,848 - CCNA_00426 0.88 +0.2
436,884 + -0.1
436,918 + +1.5
436,920 + +0.2
436,926 - +1.5
436,943 + -0.2
436,950 - +0.9
436,999 + CCNA_00427 0.22 -1.5
436,999 + CCNA_00427 0.22 +0.3
437,059 + CCNA_00427 0.53 -0.5
437,059 + CCNA_00427 0.53 +1.2
437,059 + CCNA_00427 0.53 +0.7
437,059 + CCNA_00427 0.53 +0.9
437,059 + CCNA_00427 0.53 -0.7
437,066 - CCNA_00427 0.57 +0.5
437,067 - CCNA_00427 0.58 +0.1
437,067 - CCNA_00427 0.58 +1.5
437,067 - CCNA_00427 0.58 -1.1
437,067 - CCNA_00427 0.58 -0.7
437,082 + CCNA_00427 0.66 +0.2
437,121 + CCNA_00427 0.86 -1.5
437,128 + -1.8
437,129 - +2.5
437,129 - -1.6
437,136 - +3.1
437,184 + CCNA_00428 0.21 -1.2
437,189 + CCNA_00428 0.23 -0.9
437,197 - CCNA_00428 0.28 -0.7
437,205 + CCNA_00428 0.32 +0.2
437,205 + CCNA_00428 0.32 +2.5
437,215 + CCNA_00428 0.38 -0.7
437,232 + CCNA_00428 0.47 -1.3
437,240 - CCNA_00428 0.51 +0.9
437,242 - CCNA_00428 0.52 +0.5
437,242 - CCNA_00428 0.52 +0.9
437,246 + CCNA_00428 0.55 -0.3
437,247 - CCNA_00428 0.55 -1.1
437,256 + CCNA_00428 0.60 -0.2
437,256 + CCNA_00428 0.60 +0.7
437,264 - CCNA_00428 0.64 +0.9
437,271 + CCNA_00428 0.68 +0.8
437,271 + CCNA_00428 0.68 -1.4
437,278 + CCNA_00428 0.72 +1.9
437,279 - CCNA_00428 0.73 +1.5
437,279 - CCNA_00428 0.73 +0.5
437,298 - CCNA_00428 0.83 +0.8
437,303 + CCNA_00428 0.86 +0.5
437,303 + CCNA_00428 0.86 -0.1
437,311 - -0.3
437,311 - -2.0
437,377 + -1.0
437,415 - CCNA_00429 0.19 +0.5
437,457 + CCNA_00429 0.44 +1.5
437,458 + CCNA_00429 0.45 +1.1
437,491 + CCNA_00429 0.64 -1.3
437,499 - CCNA_00429 0.69 -1.0
437,582 + CCNA_00430 0.14 +0.7
437,582 + +0.9
437,606 + CCNA_00430 0.27 -0.2
437,606 + CCNA_00430 0.27 -0.9
437,614 - CCNA_00430 0.31 -0.1
437,614 - CCNA_00430 0.31 -1.3
437,685 + CCNA_00430 0.69 +0.6
437,700 - CCNA_00430 0.77 +0.5
437,723 - -1.3
437,723 - -0.7
437,723 - +0.2
437,723 - +0.5
437,723 - -0.7
437,728 - -1.7
437,765 + +0.1
437,777 + CCNA_00431 0.13 -0.8
437,779 + CCNA_00431 0.15 -0.7
437,779 + CCNA_00431 0.15 +0.3
437,779 + CCNA_00431 0.15 -0.7
437,779 + CCNA_00431 0.15 -2.7
437,779 + CCNA_00431 0.15 -0.9
437,779 + CCNA_00431 0.15 -0.7
437,779 + CCNA_00431 0.15 +0.6
437,779 + CCNA_00431 0.15 -0.9
437,779 + CCNA_00431 0.15 -2.2
437,779 + CCNA_00431 0.15 +0.9
437,779 + CCNA_00431 0.15 +0.5
437,789 + CCNA_00431 0.23 +0.8
437,789 + CCNA_00431 0.23 -0.9
437,789 + CCNA_00431 0.23 -1.4
437,789 + CCNA_00431 0.23 -0.8
437,789 + CCNA_00431 0.23 -1.6
437,789 + CCNA_00431 0.23 +0.1
437,789 + CCNA_00431 0.23 +1.5
437,789 + CCNA_00431 0.23 +0.7
437,807 + CCNA_00431 0.37 +0.9
437,860 - CCNA_00431 0.80 -0.3
437,860 - CCNA_00431 0.80 -0.3
437,860 - +2.5
437,860 - CCNA_00431 0.80 +0.1
437,865 - CCNA_00431 0.85 -1.1

Or see this region's nucleotide sequence