Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00398

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00397 and CCNA_00398 are separated by 126 nucleotidesCCNA_00398 and CCNA_00399 are separated by 154 nucleotides CCNA_00397: CCNA_00397 - acetolactate synthase, at 413,741 to 415,279 _00397 CCNA_00398: CCNA_00398 - hypothetical protein, at 415,406 to 416,764 _00398 CCNA_00399: CCNA_00399 - zinc metallohydrolase, glyoxalase II family, at 416,919 to 418,016 _00399 Position (kb) 415 416 417Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 414.455 kb on + strand, within CCNA_00397at 414.506 kb on - strand, within CCNA_00397at 414.514 kb on + strand, within CCNA_00397at 414.539 kb on + strand, within CCNA_00397at 414.544 kb on - strand, within CCNA_00397at 414.584 kb on - strand, within CCNA_00397at 414.585 kb on + strand, within CCNA_00397at 414.693 kb on + strand, within CCNA_00397at 414.704 kb on + strand, within CCNA_00397at 414.709 kb on + strand, within CCNA_00397at 414.717 kb on - strand, within CCNA_00397at 414.778 kb on + strand, within CCNA_00397at 414.786 kb on - strand, within CCNA_00397at 414.798 kb on - strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.844 kb on + strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.852 kb on - strand, within CCNA_00397at 414.875 kb on + strand, within CCNA_00397at 414.901 kb on + strand, within CCNA_00397at 414.921 kb on + strand, within CCNA_00397at 414.926 kb on + strand, within CCNA_00397at 414.934 kb on - strand, within CCNA_00397at 414.977 kb on + strand, within CCNA_00397at 414.977 kb on + strand, within CCNA_00397at 414.979 kb on + strand, within CCNA_00397at 414.985 kb on - strand, within CCNA_00397at 414.987 kb on - strand, within CCNA_00397at 414.987 kb on - strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.989 kb on + strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 414.997 kb on - strand, within CCNA_00397at 415.039 kb on + strand, within CCNA_00397at 415.071 kb on + strand, within CCNA_00397at 415.071 kb on + strand, within CCNA_00397at 415.071 kb on + strand, within CCNA_00397at 415.076 kb on + strand, within CCNA_00397at 415.079 kb on - strand, within CCNA_00397at 415.084 kb on - strand, within CCNA_00397at 415.084 kb on - strand, within CCNA_00397at 415.124 kb on - strand, within CCNA_00397at 415.172 kb on + strandat 415.181 kb on - strandat 415.225 kb on - strandat 415.231 kb on - strandat 415.231 kb on - strandat 415.241 kb on + strandat 415.253 kb on - strandat 415.261 kb on + strandat 415.307 kb on - strandat 415.330 kb on - strandat 415.399 kb on + strandat 415.403 kb on + strandat 415.410 kb on + strandat 415.411 kb on - strandat 415.452 kb on + strandat 415.452 kb on + strandat 415.460 kb on - strandat 415.460 kb on - strandat 415.460 kb on - strandat 415.464 kb on + strandat 415.477 kb on - strandat 415.495 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.514 kb on + strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.522 kb on - strandat 415.526 kb on + strandat 415.551 kb on + strand, within CCNA_00398at 415.562 kb on + strand, within CCNA_00398at 415.573 kb on + strand, within CCNA_00398at 415.596 kb on + strand, within CCNA_00398at 415.596 kb on + strand, within CCNA_00398at 415.604 kb on - strand, within CCNA_00398at 415.636 kb on - strand, within CCNA_00398at 415.697 kb on - strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.712 kb on + strand, within CCNA_00398at 415.720 kb on - strand, within CCNA_00398at 415.720 kb on - strand, within CCNA_00398at 415.721 kb on - strand, within CCNA_00398at 415.775 kb on - strand, within CCNA_00398at 415.775 kb on - strand, within CCNA_00398at 415.819 kb on + strand, within CCNA_00398at 415.834 kb on - strand, within CCNA_00398at 415.845 kb on + strand, within CCNA_00398at 415.849 kb on - strand, within CCNA_00398at 415.853 kb on - strand, within CCNA_00398at 415.888 kb on - strand, within CCNA_00398at 415.925 kb on - strand, within CCNA_00398at 415.997 kb on + strand, within CCNA_00398at 415.998 kb on + strand, within CCNA_00398at 415.998 kb on + strand, within CCNA_00398at 416.005 kb on - strand, within CCNA_00398at 416.005 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.006 kb on - strand, within CCNA_00398at 416.025 kb on + strand, within CCNA_00398at 416.051 kb on + strand, within CCNA_00398at 416.051 kb on + strand, within CCNA_00398at 416.059 kb on - strand, within CCNA_00398at 416.059 kb on - strand, within CCNA_00398at 416.106 kb on + strand, within CCNA_00398at 416.139 kb on + strand, within CCNA_00398at 416.145 kb on - strand, within CCNA_00398at 416.146 kb on - strand, within CCNA_00398at 416.153 kb on - strand, within CCNA_00398at 416.159 kb on + strand, within CCNA_00398at 416.163 kb on - strand, within CCNA_00398at 416.195 kb on + strand, within CCNA_00398at 416.198 kb on + strand, within CCNA_00398at 416.203 kb on - strand, within CCNA_00398at 416.230 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.237 kb on + strand, within CCNA_00398at 416.245 kb on - strand, within CCNA_00398at 416.245 kb on - strand, within CCNA_00398at 416.247 kb on + strand, within CCNA_00398at 416.255 kb on - strand, within CCNA_00398at 416.299 kb on - strand, within CCNA_00398at 416.360 kb on + strand, within CCNA_00398at 416.395 kb on + strand, within CCNA_00398at 416.397 kb on + strand, within CCNA_00398at 416.405 kb on - strand, within CCNA_00398at 416.405 kb on - strand, within CCNA_00398at 416.405 kb on - strand, within CCNA_00398at 416.410 kb on - strand, within CCNA_00398at 416.443 kb on + strand, within CCNA_00398at 416.451 kb on - strand, within CCNA_00398at 416.453 kb on + strand, within CCNA_00398at 416.453 kb on + strand, within CCNA_00398at 416.454 kb on + strand, within CCNA_00398at 416.454 kb on + strand, within CCNA_00398at 416.459 kb on + strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.461 kb on - strand, within CCNA_00398at 416.472 kb on + strand, within CCNA_00398at 416.474 kb on + strand, within CCNA_00398at 416.480 kb on - strand, within CCNA_00398at 416.506 kb on - strand, within CCNA_00398at 416.506 kb on - strand, within CCNA_00398at 416.556 kb on - strand, within CCNA_00398at 416.562 kb on - strand, within CCNA_00398at 416.600 kb on - strand, within CCNA_00398at 416.638 kb on - strandat 416.649 kb on - strandat 416.658 kb on + strandat 416.666 kb on + strandat 416.666 kb on + strandat 416.675 kb on + strandat 416.705 kb on + strandat 416.714 kb on - strandat 416.728 kb on + strandat 416.757 kb on + strandat 416.765 kb on + strandat 416.765 kb on - strandat 416.800 kb on + strandat 416.824 kb on + strandat 416.824 kb on + strandat 416.832 kb on - strandat 416.850 kb on + strandat 416.893 kb on + strandat 416.901 kb on - strandat 416.901 kb on - strandat 416.901 kb on - strandat 416.911 kb on + strandat 416.974 kb on - strandat 416.984 kb on + strandat 417.017 kb on - strandat 417.037 kb on - strand, within CCNA_00399at 417.046 kb on - strand, within CCNA_00399at 417.066 kb on + strand, within CCNA_00399at 417.090 kb on + strand, within CCNA_00399at 417.119 kb on + strand, within CCNA_00399at 417.119 kb on + strand, within CCNA_00399at 417.119 kb on + strand, within CCNA_00399at 417.120 kb on + strand, within CCNA_00399at 417.127 kb on - strand, within CCNA_00399at 417.127 kb on - strand, within CCNA_00399at 417.152 kb on - strand, within CCNA_00399at 417.157 kb on + strand, within CCNA_00399at 417.175 kb on - strand, within CCNA_00399at 417.226 kb on + strand, within CCNA_00399at 417.278 kb on + strand, within CCNA_00399at 417.309 kb on + strand, within CCNA_00399at 417.317 kb on - strand, within CCNA_00399at 417.333 kb on - strand, within CCNA_00399at 417.343 kb on - strand, within CCNA_00399at 417.377 kb on - strand, within CCNA_00399at 417.449 kb on + strand, within CCNA_00399at 417.525 kb on - strand, within CCNA_00399at 417.534 kb on + strand, within CCNA_00399at 417.534 kb on + strand, within CCNA_00399at 417.542 kb on - strand, within CCNA_00399at 417.561 kb on + strand, within CCNA_00399at 417.561 kb on + strand, within CCNA_00399at 417.569 kb on - strand, within CCNA_00399at 417.569 kb on - strand, within CCNA_00399at 417.586 kb on - strand, within CCNA_00399at 417.646 kb on - strand, within CCNA_00399at 417.672 kb on + strand, within CCNA_00399at 417.689 kb on + strand, within CCNA_00399at 417.695 kb on + strand, within CCNA_00399at 417.703 kb on - strand, within CCNA_00399at 417.756 kb on + strand, within CCNA_00399

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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414,455 + CCNA_00397 0.46 -0.9
414,506 - CCNA_00397 0.50 +0.9
414,514 + CCNA_00397 0.50 +0.7
414,539 + CCNA_00397 0.52 -0.7
414,544 - CCNA_00397 0.52 -0.4
414,584 - CCNA_00397 0.55 +2.3
414,585 + CCNA_00397 0.55 +0.0
414,693 + CCNA_00397 0.62 +0.7
414,704 + CCNA_00397 0.63 -0.6
414,709 + CCNA_00397 0.63 +1.5
414,717 - CCNA_00397 0.63 +0.2
414,778 + CCNA_00397 0.67 +0.3
414,786 - CCNA_00397 0.68 -0.3
414,798 - CCNA_00397 0.69 +1.1
414,844 + CCNA_00397 0.72 +1.3
414,844 + CCNA_00397 0.72 +1.2
414,844 + CCNA_00397 0.72 -1.0
414,844 + CCNA_00397 0.72 +0.2
414,844 + CCNA_00397 0.72 +2.2
414,844 + CCNA_00397 0.72 -0.6
414,844 + CCNA_00397 0.72 -0.4
414,844 + CCNA_00397 0.72 +0.2
414,844 + CCNA_00397 0.72 -0.4
414,844 + CCNA_00397 0.72 -1.4
414,844 + CCNA_00397 0.72 +1.1
414,852 - CCNA_00397 0.72 -0.2
414,852 - CCNA_00397 0.72 -0.5
414,852 - CCNA_00397 0.72 -0.5
414,852 - CCNA_00397 0.72 -0.3
414,852 - CCNA_00397 0.72 +0.2
414,875 + CCNA_00397 0.74 +0.8
414,901 + CCNA_00397 0.75 +0.7
414,921 + CCNA_00397 0.77 +0.2
414,926 + CCNA_00397 0.77 -0.3
414,934 - CCNA_00397 0.78 -0.1
414,977 + CCNA_00397 0.80 +0.2
414,977 + CCNA_00397 0.80 -2.3
414,979 + CCNA_00397 0.80 -0.7
414,985 - CCNA_00397 0.81 -2.0
414,987 - CCNA_00397 0.81 +2.7
414,987 - CCNA_00397 0.81 +2.7
414,989 + CCNA_00397 0.81 +2.0
414,989 + CCNA_00397 0.81 -1.3
414,989 + CCNA_00397 0.81 -1.2
414,989 + CCNA_00397 0.81 -0.3
414,989 + CCNA_00397 0.81 -0.7
414,989 + CCNA_00397 0.81 -1.6
414,997 - CCNA_00397 0.82 -0.1
414,997 - CCNA_00397 0.82 +1.1
414,997 - CCNA_00397 0.82 -2.1
414,997 - CCNA_00397 0.82 +1.5
414,997 - CCNA_00397 0.82 +0.2
415,039 + CCNA_00397 0.84 -0.2
415,071 + CCNA_00397 0.86 -0.9
415,071 + CCNA_00397 0.86 +0.3
415,071 + CCNA_00397 0.86 -0.2
415,076 + CCNA_00397 0.87 +1.5
415,079 - CCNA_00397 0.87 +0.2
415,084 - CCNA_00397 0.87 -0.1
415,084 - CCNA_00397 0.87 -0.1
415,124 - CCNA_00397 0.90 +1.1
415,172 + +0.1
415,181 - +0.9
415,225 - -0.6
415,231 - -2.5
415,231 - -0.3
415,241 + +1.9
415,253 - +1.3
415,261 + +0.6
415,307 - -0.5
415,330 - -1.0
415,399 + +0.3
415,403 + -1.0
415,410 + +0.5
415,411 - +3.2
415,452 + -1.0
415,452 + +0.5
415,460 - +3.8
415,460 - +3.1
415,460 - +3.6
415,464 + +0.2
415,477 - +4.5
415,495 + +0.9
415,514 + -1.3
415,514 + -2.3
415,514 + -0.3
415,514 + +0.9
415,514 + -1.5
415,514 + +0.9
415,514 + -0.5
415,522 - +3.9
415,522 - +3.6
415,522 - +4.4
415,522 - +3.9
415,522 - +4.1
415,522 - +3.0
415,522 - +3.9
415,522 - +4.0
415,526 + +0.9
415,551 + CCNA_00398 0.11 -1.1
415,562 + CCNA_00398 0.11 -2.0
415,573 + CCNA_00398 0.12 +1.5
415,596 + CCNA_00398 0.14 +0.1
415,596 + CCNA_00398 0.14 -0.5
415,604 - CCNA_00398 0.15 +3.9
415,636 - CCNA_00398 0.17 +3.5
415,697 - CCNA_00398 0.21 +3.3
415,712 + CCNA_00398 0.23 -0.1
415,712 + CCNA_00398 0.23 +0.9
415,712 + CCNA_00398 0.23 -2.0
415,712 + CCNA_00398 0.23 -0.7
415,712 + CCNA_00398 0.23 -1.9
415,720 - CCNA_00398 0.23 +3.2
415,720 - CCNA_00398 0.23 +4.0
415,721 - CCNA_00398 0.23 +4.0
415,775 - CCNA_00398 0.27 +3.4
415,775 - CCNA_00398 0.27 +3.8
415,819 + CCNA_00398 0.30 +0.5
415,834 - CCNA_00398 0.31 +1.5
415,845 + CCNA_00398 0.32 -1.3
415,849 - CCNA_00398 0.33 +2.2
415,853 - CCNA_00398 0.33 +3.0
415,888 - CCNA_00398 0.35 +2.9
415,925 - CCNA_00398 0.38 +1.8
415,997 + CCNA_00398 0.43 -1.0
415,998 + CCNA_00398 0.44 -1.5
415,998 + CCNA_00398 0.44 -0.7
416,005 - CCNA_00398 0.44 +3.0
416,005 - CCNA_00398 0.44 +2.6
416,006 - CCNA_00398 0.44 +3.6
416,006 - CCNA_00398 0.44 +1.6
416,006 - CCNA_00398 0.44 +2.1
416,025 + CCNA_00398 0.46 -1.5
416,051 + CCNA_00398 0.47 +0.3
416,051 + CCNA_00398 0.47 +0.9
416,059 - CCNA_00398 0.48 +3.2
416,059 - CCNA_00398 0.48 +2.1
416,106 + CCNA_00398 0.52 -0.1
416,139 + CCNA_00398 0.54 +0.5
416,145 - CCNA_00398 0.54 +1.4
416,146 - CCNA_00398 0.54 +1.4
416,153 - CCNA_00398 0.55 +1.6
416,159 + CCNA_00398 0.55 -1.6
416,163 - CCNA_00398 0.56 +1.7
416,195 + CCNA_00398 0.58 -0.3
416,198 + CCNA_00398 0.58 -0.2
416,203 - CCNA_00398 0.59 +1.5
416,230 + CCNA_00398 0.61 -1.0
416,237 + CCNA_00398 0.61 +0.7
416,237 + CCNA_00398 0.61 +0.5
416,237 + CCNA_00398 0.61 +0.9
416,245 - CCNA_00398 0.62 +2.8
416,245 - CCNA_00398 0.62 +1.3
416,247 + CCNA_00398 0.62 +1.0
416,255 - CCNA_00398 0.62 +0.8
416,299 - CCNA_00398 0.66 +1.6
416,360 + CCNA_00398 0.70 +1.7
416,395 + CCNA_00398 0.73 +1.5
416,397 + CCNA_00398 0.73 -0.5
416,405 - CCNA_00398 0.74 +2.7
416,405 - CCNA_00398 0.74 +3.1
416,405 - CCNA_00398 0.74 +2.9
416,410 - CCNA_00398 0.74 +1.0
416,443 + CCNA_00398 0.76 -1.0
416,451 - CCNA_00398 0.77 +1.1
416,453 + CCNA_00398 0.77 -0.5
416,453 + CCNA_00398 0.77 -1.1
416,454 + CCNA_00398 0.77 -0.3
416,454 + CCNA_00398 0.77 +0.9
416,459 + CCNA_00398 0.77 +2.5
416,461 - CCNA_00398 0.78 +2.7
416,461 - CCNA_00398 0.78 +2.6
416,461 - CCNA_00398 0.78 +2.8
416,461 - CCNA_00398 0.78 +1.5
416,461 - CCNA_00398 0.78 +1.8
416,461 - CCNA_00398 0.78 +2.4
416,461 - CCNA_00398 0.78 +3.1
416,472 + CCNA_00398 0.78 -1.0
416,474 + CCNA_00398 0.79 +0.5
416,480 - CCNA_00398 0.79 +1.7
416,506 - CCNA_00398 0.81 +2.3
416,506 - CCNA_00398 0.81 +2.0
416,556 - CCNA_00398 0.85 +2.5
416,562 - CCNA_00398 0.85 +1.8
416,600 - CCNA_00398 0.88 +1.6
416,638 - +2.2
416,649 - +2.6
416,658 + -0.2
416,666 + +0.5
416,666 + +2.5
416,675 + +1.5
416,705 + -0.3
416,714 - +2.0
416,728 + -1.2
416,757 + -0.1
416,765 + -1.1
416,765 - -2.2
416,800 + +0.9
416,824 + -0.3
416,824 + -0.5
416,832 - -1.1
416,850 + +0.5
416,893 + +0.3
416,901 - +1.5
416,901 - -0.6
416,901 - -1.4
416,911 + -0.2
416,974 - -0.1
416,984 + -1.8
417,017 - -1.3
417,037 - CCNA_00399 0.11 -1.1
417,046 - CCNA_00399 0.12 -0.3
417,066 + CCNA_00399 0.13 +0.4
417,090 + CCNA_00399 0.16 -1.2
417,119 + CCNA_00399 0.18 -1.7
417,119 + CCNA_00399 0.18 -1.6
417,119 + CCNA_00399 0.18 -0.3
417,120 + CCNA_00399 0.18 -0.5
417,127 - CCNA_00399 0.19 +0.9
417,127 - CCNA_00399 0.19 +0.9
417,152 - CCNA_00399 0.21 +0.9
417,157 + CCNA_00399 0.22 +1.3
417,175 - CCNA_00399 0.23 -0.3
417,226 + CCNA_00399 0.28 -0.0
417,278 + CCNA_00399 0.33 -2.3
417,309 + CCNA_00399 0.36 -1.5
417,317 - CCNA_00399 0.36 +1.5
417,333 - CCNA_00399 0.38 -1.3
417,343 - CCNA_00399 0.39 -1.0
417,377 - CCNA_00399 0.42 +2.5
417,449 + CCNA_00399 0.48 -0.8
417,525 - CCNA_00399 0.55 -2.4
417,534 + CCNA_00399 0.56 -1.0
417,534 + CCNA_00399 0.56 +0.2
417,542 - CCNA_00399 0.57 -1.2
417,561 + CCNA_00399 0.58 +1.5
417,561 + CCNA_00399 0.58 -1.4
417,569 - CCNA_00399 0.59 -0.1
417,569 - CCNA_00399 0.59 +0.2
417,586 - CCNA_00399 0.61 +0.5
417,646 - CCNA_00399 0.66 +0.7
417,672 + CCNA_00399 0.69 -0.5
417,689 + CCNA_00399 0.70 -2.2
417,695 + CCNA_00399 0.71 +2.5
417,703 - CCNA_00399 0.71 +2.5
417,756 + CCNA_00399 0.76 -1.2

Or see this region's nucleotide sequence