Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00381

Experiment: PYE with nitrite 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00379 and CCNA_00380 are separated by 238 nucleotidesCCNA_00380 and CCNA_00381 are separated by 47 nucleotidesCCNA_00381 and CCNA_00382 are separated by 121 nucleotides CCNA_00379: CCNA_00379 - thiol:disulfide interchange protein dsbA, at 396,026 to 396,640 _00379 CCNA_00380: CCNA_00380 - conserved hypothetical cytosolic protein, at 396,879 to 397,418 _00380 CCNA_00381: CCNA_00381 - A/G-specific adenine DNA glycosylase, at 397,466 to 398,515 _00381 CCNA_00382: CCNA_00382 - adenine-specific methyltransferase ccrM, at 398,637 to 399,713 _00382 Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 396.621 kb on + strandat 396.642 kb on + strandat 396.685 kb on + strandat 396.820 kb on + strandat 396.820 kb on + strandat 396.823 kb on - strandat 396.828 kb on - strandat 396.828 kb on - strandat 396.828 kb on - strandat 396.846 kb on - strandat 396.856 kb on - strandat 396.865 kb on + strandat 396.884 kb on + strandat 396.894 kb on - strandat 397.396 kb on + strandat 397.462 kb on + strandat 397.470 kb on - strandat 397.488 kb on + strandat 397.501 kb on + strandat 397.507 kb on + strandat 397.526 kb on + strandat 397.531 kb on + strandat 397.531 kb on + strandat 397.539 kb on - strandat 397.539 kb on - strandat 397.558 kb on - strandat 397.560 kb on + strandat 397.597 kb on + strand, within CCNA_00381at 397.618 kb on + strand, within CCNA_00381at 397.620 kb on + strand, within CCNA_00381at 397.626 kb on - strand, within CCNA_00381at 397.635 kb on - strand, within CCNA_00381at 397.641 kb on - strandat 397.663 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.691 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.820 kb on + strand, within CCNA_00381at 397.828 kb on - strand, within CCNA_00381at 397.840 kb on - strand, within CCNA_00381at 397.854 kb on - strand, within CCNA_00381at 397.854 kb on - strand, within CCNA_00381at 397.854 kb on - strand, within CCNA_00381at 397.877 kb on + strand, within CCNA_00381at 397.929 kb on - strand, within CCNA_00381at 397.963 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.073 kb on - strand, within CCNA_00381at 398.073 kb on - strand, within CCNA_00381at 398.073 kb on - strand, within CCNA_00381at 398.091 kb on + strand, within CCNA_00381at 398.096 kb on + strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.140 kb on - strand, within CCNA_00381at 398.140 kb on - strand, within CCNA_00381at 398.186 kb on - strand, within CCNA_00381at 398.370 kb on + strand, within CCNA_00381at 398.378 kb on - strand, within CCNA_00381at 398.385 kb on + strand, within CCNA_00381at 398.397 kb on - strand, within CCNA_00381at 398.429 kb on + strandat 398.442 kb on - strandat 398.453 kb on + strandat 398.453 kb on + strandat 398.461 kb on - strandat 398.461 kb on - strandat 398.462 kb on + strandat 398.462 kb on + strandat 398.462 kb on + strandat 398.470 kb on - strandat 398.470 kb on - strandat 398.509 kb on + strandat 398.517 kb on - strandat 398.519 kb on + strandat 398.591 kb on + strandat 398.599 kb on - strandat 398.635 kb on + strandat 398.641 kb on - strandat 398.641 kb on - strandat 398.643 kb on - strandat 398.648 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
remove
396,621 + -0.0
396,642 + -0.3
396,685 + -0.5
396,820 + -1.0
396,820 + -0.7
396,823 - +0.3
396,828 - +0.1
396,828 - -0.5
396,828 - -0.9
396,846 - +1.0
396,856 - +3.3
396,865 + -0.8
396,884 + +1.3
396,894 - -1.2
397,396 + -1.7
397,462 + -1.4
397,470 - -3.0
397,488 + +0.9
397,501 + -2.2
397,507 + -1.2
397,526 + -1.0
397,531 + -1.2
397,531 + +2.5
397,539 - -1.5
397,539 - -1.0
397,558 - +0.9
397,560 + -0.9
397,597 + CCNA_00381 0.12 -0.5
397,618 + CCNA_00381 0.14 -0.8
397,620 + CCNA_00381 0.15 +1.5
397,626 - CCNA_00381 0.15 -1.2
397,635 - CCNA_00381 0.16 -1.6
397,641 - +2.5
397,663 + CCNA_00381 0.19 +0.3
397,676 + CCNA_00381 0.20 -1.2
397,676 + CCNA_00381 0.20 -2.4
397,676 + CCNA_00381 0.20 -2.1
397,676 + CCNA_00381 0.20 -3.1
397,676 + CCNA_00381 0.20 +0.5
397,676 + CCNA_00381 0.20 -1.8
397,676 + CCNA_00381 0.20 -1.2
397,676 + CCNA_00381 0.20 -1.4
397,676 + CCNA_00381 0.20 -2.6
397,676 + CCNA_00381 0.20 -0.7
397,676 + CCNA_00381 0.20 -0.7
397,684 - CCNA_00381 0.21 -0.3
397,684 - CCNA_00381 0.21 -1.0
397,684 - CCNA_00381 0.21 -0.8
397,684 - CCNA_00381 0.21 +1.5
397,684 - CCNA_00381 0.21 +0.5
397,684 - CCNA_00381 0.21 +2.5
397,684 - CCNA_00381 0.21 -0.8
397,684 - CCNA_00381 0.21 -0.1
397,691 + CCNA_00381 0.21 -2.4
397,757 + CCNA_00381 0.28 -0.5
397,757 + CCNA_00381 0.28 -1.3
397,757 + CCNA_00381 0.28 +0.1
397,757 + CCNA_00381 0.28 -1.1
397,757 + CCNA_00381 0.28 +1.2
397,757 + CCNA_00381 0.28 -0.8
397,757 + CCNA_00381 0.28 -1.7
397,757 + CCNA_00381 0.28 +1.2
397,757 + CCNA_00381 0.28 -2.0
397,757 + CCNA_00381 0.28 +0.7
397,757 + CCNA_00381 0.28 -1.0
397,765 - CCNA_00381 0.28 -0.5
397,765 - CCNA_00381 0.28 +3.1
397,765 - CCNA_00381 0.28 -2.2
397,765 - CCNA_00381 0.28 -3.0
397,765 - CCNA_00381 0.28 +0.9
397,765 - CCNA_00381 0.28 -0.5
397,765 - CCNA_00381 0.28 -0.7
397,765 - CCNA_00381 0.28 -3.6
397,765 - CCNA_00381 0.28 +0.3
397,765 - CCNA_00381 0.28 -1.8
397,765 - CCNA_00381 0.28 -0.5
397,765 - CCNA_00381 0.28 +0.5
397,765 - CCNA_00381 0.28 -1.6
397,765 - CCNA_00381 0.28 +2.5
397,765 - CCNA_00381 0.28 +0.5
397,765 - CCNA_00381 0.28 -0.3
397,765 - CCNA_00381 0.28 -2.3
397,765 - CCNA_00381 0.28 -1.4
397,765 - CCNA_00381 0.28 +0.5
397,820 + CCNA_00381 0.34 -0.7
397,828 - CCNA_00381 0.34 -1.7
397,840 - CCNA_00381 0.36 +1.5
397,854 - CCNA_00381 0.37 -0.3
397,854 - CCNA_00381 0.37 +0.2
397,854 - CCNA_00381 0.37 +0.5
397,877 + CCNA_00381 0.39 -0.3
397,929 - CCNA_00381 0.44 -0.1
397,963 + CCNA_00381 0.47 -0.3
398,065 + CCNA_00381 0.57 -1.6
398,065 + CCNA_00381 0.57 +0.9
398,065 + CCNA_00381 0.57 +0.2
398,073 - CCNA_00381 0.58 +0.5
398,073 - CCNA_00381 0.58 -1.0
398,073 - CCNA_00381 0.58 +1.1
398,091 + CCNA_00381 0.60 +0.9
398,096 + CCNA_00381 0.60 -2.0
398,132 + CCNA_00381 0.63 -1.6
398,132 + CCNA_00381 0.63 -0.7
398,140 - CCNA_00381 0.64 +0.2
398,140 - CCNA_00381 0.64 +0.9
398,186 - CCNA_00381 0.69 -0.8
398,370 + CCNA_00381 0.86 +2.5
398,378 - CCNA_00381 0.87 -1.2
398,385 + CCNA_00381 0.88 +2.5
398,397 - CCNA_00381 0.89 +0.9
398,429 + -0.1
398,442 - -1.9
398,453 + -1.6
398,453 + -0.1
398,461 - +0.1
398,461 - +1.1
398,462 + -1.4
398,462 + +0.5
398,462 + -0.7
398,470 - -1.2
398,470 - +3.2
398,509 + -1.8
398,517 - +0.7
398,519 + +0.2
398,591 + -2.4
398,599 - +1.6
398,635 + +0.9
398,641 - +1.5
398,641 - +0.9
398,643 - +1.5
398,648 - +3.2

Or see this region's nucleotide sequence