Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00353

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00352 and CCNA_00353 are separated by 124 nucleotidesCCNA_00353 and CCNA_00354 are separated by 70 nucleotidesCCNA_00354 and CCNA_00355 are separated by 170 nucleotides CCNA_00352: CCNA_00352 - integral membrane protein, at 368,358 to 369,155 _00352 CCNA_00353: CCNA_00353 - O-antigen acetylase, at 369,280 to 370,374 _00353 CCNA_00354: CCNA_00354 - NlpC/P60 CHAP domain amidase protein, at 370,445 to 371,152 _00354 CCNA_00355: CCNA_00355 - hypothetical protein with pentapeptide repeats, at 371,323 to 372,567 _00355 Position (kb) 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 368.292 kb on - strandat 368.328 kb on + strandat 368.357 kb on + strandat 368.409 kb on - strandat 368.409 kb on - strandat 368.421 kb on - strandat 368.422 kb on - strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.433 kb on + strandat 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.441 kb on - strand, within CCNA_00352at 368.448 kb on + strand, within CCNA_00352at 368.449 kb on + strand, within CCNA_00352at 368.451 kb on - strand, within CCNA_00352at 368.456 kb on - strand, within CCNA_00352at 368.456 kb on - strand, within CCNA_00352at 368.457 kb on - strand, within CCNA_00352at 368.487 kb on + strand, within CCNA_00352at 368.500 kb on - strand, within CCNA_00352at 368.527 kb on + strand, within CCNA_00352at 368.559 kb on + strand, within CCNA_00352at 368.585 kb on + strandat 368.631 kb on + strand, within CCNA_00352at 368.638 kb on + strand, within CCNA_00352at 368.697 kb on - strand, within CCNA_00352at 368.721 kb on + strand, within CCNA_00352at 368.737 kb on + strand, within CCNA_00352at 368.737 kb on + strand, within CCNA_00352at 368.744 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.745 kb on - strand, within CCNA_00352at 368.756 kb on + strand, within CCNA_00352at 368.772 kb on + strand, within CCNA_00352at 368.845 kb on - strand, within CCNA_00352at 368.848 kb on + strand, within CCNA_00352at 368.848 kb on + strand, within CCNA_00352at 368.895 kb on - strand, within CCNA_00352at 368.912 kb on + strand, within CCNA_00352at 368.921 kb on - strand, within CCNA_00352at 368.921 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.979 kb on - strand, within CCNA_00352at 368.989 kb on - strand, within CCNA_00352at 368.989 kb on - strand, within CCNA_00352at 369.016 kb on - strand, within CCNA_00352at 369.022 kb on + strand, within CCNA_00352at 369.030 kb on - strand, within CCNA_00352at 369.030 kb on - strand, within CCNA_00352at 369.052 kb on - strand, within CCNA_00352at 369.080 kb on - strandat 369.080 kb on - strandat 369.115 kb on - strandat 369.125 kb on + strandat 369.166 kb on - strandat 369.168 kb on + strandat 369.179 kb on - strandat 369.196 kb on + strandat 369.204 kb on + strandat 369.286 kb on + strandat 369.296 kb on + strandat 369.304 kb on - strandat 369.340 kb on - strandat 369.348 kb on + strandat 369.377 kb on + strandat 369.385 kb on + strandat 369.403 kb on - strand, within CCNA_00353at 369.440 kb on + strand, within CCNA_00353at 369.471 kb on + strand, within CCNA_00353at 369.481 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.525 kb on + strand, within CCNA_00353at 369.532 kb on + strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.533 kb on - strand, within CCNA_00353at 369.552 kb on + strand, within CCNA_00353at 369.594 kb on + strand, within CCNA_00353at 369.618 kb on + strand, within CCNA_00353at 369.621 kb on - strand, within CCNA_00353at 369.626 kb on - strand, within CCNA_00353at 369.626 kb on - strand, within CCNA_00353at 369.652 kb on + strand, within CCNA_00353at 369.659 kb on + strand, within CCNA_00353at 369.667 kb on - strand, within CCNA_00353at 369.682 kb on + strand, within CCNA_00353at 369.682 kb on + strand, within CCNA_00353at 369.690 kb on - strand, within CCNA_00353at 369.690 kb on - strand, within CCNA_00353at 369.701 kb on + strand, within CCNA_00353at 369.712 kb on + strand, within CCNA_00353at 369.727 kb on + strand, within CCNA_00353at 369.735 kb on - strand, within CCNA_00353at 369.742 kb on + strand, within CCNA_00353at 369.742 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.790 kb on + strand, within CCNA_00353at 369.798 kb on - strand, within CCNA_00353at 369.800 kb on + strand, within CCNA_00353at 369.808 kb on - strand, within CCNA_00353at 369.808 kb on - strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.819 kb on + strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.827 kb on - strand, within CCNA_00353at 369.829 kb on - strand, within CCNA_00353at 369.888 kb on + strand, within CCNA_00353at 369.900 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.907 kb on + strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.915 kb on - strand, within CCNA_00353at 369.937 kb on - strand, within CCNA_00353at 369.941 kb on - strand, within CCNA_00353at 369.982 kb on + strand, within CCNA_00353at 369.982 kb on + strand, within CCNA_00353at 370.017 kb on - strand, within CCNA_00353at 370.022 kb on - strand, within CCNA_00353at 370.027 kb on + strand, within CCNA_00353at 370.027 kb on + strand, within CCNA_00353at 370.045 kb on + strand, within CCNA_00353at 370.053 kb on - strand, within CCNA_00353at 370.071 kb on + strand, within CCNA_00353at 370.079 kb on - strand, within CCNA_00353at 370.080 kb on + strand, within CCNA_00353at 370.080 kb on + strand, within CCNA_00353at 370.404 kb on + strandat 370.411 kb on + strandat 370.412 kb on - strandat 370.419 kb on - strandat 370.431 kb on + strandat 370.437 kb on - strandat 370.444 kb on - strandat 370.466 kb on + strandat 370.495 kb on + strandat 370.505 kb on + strandat 370.600 kb on - strand, within CCNA_00354at 370.610 kb on - strand, within CCNA_00354at 370.640 kb on + strand, within CCNA_00354at 370.640 kb on + strand, within CCNA_00354at 370.665 kb on + strand, within CCNA_00354at 370.666 kb on - strand, within CCNA_00354at 370.674 kb on - strand, within CCNA_00354at 370.684 kb on + strand, within CCNA_00354at 370.684 kb on + strand, within CCNA_00354at 370.725 kb on - strand, within CCNA_00354at 370.739 kb on - strand, within CCNA_00354at 370.805 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.840 kb on + strand, within CCNA_00354at 370.846 kb on + strand, within CCNA_00354at 370.859 kb on - strand, within CCNA_00354at 370.881 kb on + strand, within CCNA_00354at 370.961 kb on + strand, within CCNA_00354at 370.961 kb on + strand, within CCNA_00354at 370.971 kb on + strand, within CCNA_00354at 370.983 kb on - strand, within CCNA_00354at 371.012 kb on + strand, within CCNA_00354at 371.030 kb on + strand, within CCNA_00354at 371.098 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.146 kb on + strandat 371.154 kb on - strandat 371.159 kb on - strandat 371.167 kb on + strandat 371.234 kb on + strandat 371.277 kb on + strandat 371.292 kb on - strandat 371.338 kb on - strandat 371.363 kb on - strandat 371.370 kb on + strandat 371.372 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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368,292 - +0.2
368,328 + -1.4
368,357 + -0.7
368,409 - +3.1
368,409 - +2.8
368,421 - +3.1
368,422 - +2.2
368,433 + -1.5
368,433 + -0.5
368,433 + -0.3
368,433 + -1.5
368,433 + -1.3
368,441 - CCNA_00352 0.10 +3.3
368,441 - CCNA_00352 0.10 +3.7
368,441 - CCNA_00352 0.10 +2.7
368,441 - CCNA_00352 0.10 +3.3
368,441 - CCNA_00352 0.10 +2.7
368,441 - CCNA_00352 0.10 +3.4
368,441 - CCNA_00352 0.10 +3.1
368,441 - CCNA_00352 0.10 +2.6
368,441 - CCNA_00352 0.10 +3.3
368,441 - CCNA_00352 0.10 +3.7
368,448 + CCNA_00352 0.11 -0.1
368,449 + CCNA_00352 0.11 -2.4
368,451 - CCNA_00352 0.12 +2.5
368,456 - CCNA_00352 0.12 +1.9
368,456 - CCNA_00352 0.12 +2.2
368,457 - CCNA_00352 0.12 +2.5
368,487 + CCNA_00352 0.16 +1.9
368,500 - CCNA_00352 0.18 +2.9
368,527 + CCNA_00352 0.21 +0.5
368,559 + CCNA_00352 0.25 -0.5
368,585 + +2.5
368,631 + CCNA_00352 0.34 -0.7
368,638 + CCNA_00352 0.35 -0.1
368,697 - CCNA_00352 0.42 +2.3
368,721 + CCNA_00352 0.45 +0.2
368,737 + CCNA_00352 0.47 +0.5
368,737 + CCNA_00352 0.47 -0.1
368,744 - CCNA_00352 0.48 +1.7
368,745 - CCNA_00352 0.48 +1.9
368,745 - CCNA_00352 0.48 +2.2
368,745 - CCNA_00352 0.48 +1.9
368,745 - CCNA_00352 0.48 +2.4
368,756 + CCNA_00352 0.50 -1.4
368,772 + CCNA_00352 0.52 -1.6
368,845 - CCNA_00352 0.61 +0.9
368,848 + CCNA_00352 0.61 +1.5
368,848 + CCNA_00352 0.61 -0.7
368,895 - CCNA_00352 0.67 +0.1
368,912 + CCNA_00352 0.69 +1.5
368,921 - CCNA_00352 0.71 +0.1
368,921 - CCNA_00352 0.71 -0.7
368,979 - CCNA_00352 0.78 +0.2
368,979 - CCNA_00352 0.78 +1.5
368,979 - CCNA_00352 0.78 +1.1
368,989 - CCNA_00352 0.79 +2.1
368,989 - CCNA_00352 0.79 +3.2
369,016 - CCNA_00352 0.82 +2.5
369,022 + CCNA_00352 0.83 -1.2
369,030 - CCNA_00352 0.84 +3.7
369,030 - CCNA_00352 0.84 +1.9
369,052 - CCNA_00352 0.87 +1.9
369,080 - +0.3
369,080 - +1.7
369,115 - +1.0
369,125 + -1.3
369,166 - +1.2
369,168 + +0.2
369,179 - +1.9
369,196 + -0.2
369,204 + -0.0
369,286 + -1.7
369,296 + -1.1
369,304 - +1.5
369,340 - +1.5
369,348 + -0.1
369,377 + +0.5
369,385 + +1.0
369,403 - CCNA_00353 0.11 +0.3
369,440 + CCNA_00353 0.15 -0.8
369,471 + CCNA_00353 0.17 -0.1
369,481 + CCNA_00353 0.18 -2.0
369,525 + CCNA_00353 0.22 -0.5
369,525 + CCNA_00353 0.22 -1.4
369,525 + CCNA_00353 0.22 -0.0
369,525 + CCNA_00353 0.22 -1.1
369,525 + CCNA_00353 0.22 -1.0
369,525 + CCNA_00353 0.22 -0.4
369,532 + CCNA_00353 0.23 +0.4
369,533 - CCNA_00353 0.23 -0.1
369,533 - CCNA_00353 0.23 -0.1
369,533 - CCNA_00353 0.23 -2.0
369,533 - CCNA_00353 0.23 -1.3
369,533 - CCNA_00353 0.23 -0.9
369,552 + CCNA_00353 0.25 -0.7
369,594 + CCNA_00353 0.29 +0.9
369,618 + CCNA_00353 0.31 +0.3
369,621 - CCNA_00353 0.31 -0.7
369,626 - CCNA_00353 0.32 +0.9
369,626 - CCNA_00353 0.32 -2.5
369,652 + CCNA_00353 0.34 -0.6
369,659 + CCNA_00353 0.35 +2.5
369,667 - CCNA_00353 0.35 -2.1
369,682 + CCNA_00353 0.37 +0.1
369,682 + CCNA_00353 0.37 -1.5
369,690 - CCNA_00353 0.37 -1.0
369,690 - CCNA_00353 0.37 -0.3
369,701 + CCNA_00353 0.38 -0.8
369,712 + CCNA_00353 0.39 -0.6
369,727 + CCNA_00353 0.41 -1.8
369,735 - CCNA_00353 0.42 +1.5
369,742 + CCNA_00353 0.42 -0.5
369,742 + CCNA_00353 0.42 -2.0
369,790 + CCNA_00353 0.47 -0.5
369,790 + CCNA_00353 0.47 -1.7
369,790 + CCNA_00353 0.47 -0.9
369,790 + CCNA_00353 0.47 -1.3
369,798 - CCNA_00353 0.47 +1.5
369,800 + CCNA_00353 0.47 +1.3
369,808 - CCNA_00353 0.48 -0.2
369,808 - CCNA_00353 0.48 +2.5
369,819 + CCNA_00353 0.49 -0.5
369,819 + CCNA_00353 0.49 +0.0
369,819 + CCNA_00353 0.49 -0.2
369,827 - CCNA_00353 0.50 -0.3
369,827 - CCNA_00353 0.50 +0.5
369,827 - CCNA_00353 0.50 +0.9
369,827 - CCNA_00353 0.50 -1.8
369,829 - CCNA_00353 0.50 -1.0
369,888 + CCNA_00353 0.56 -1.5
369,900 + CCNA_00353 0.57 -2.0
369,907 + CCNA_00353 0.57 -0.1
369,907 + CCNA_00353 0.57 +1.2
369,907 + CCNA_00353 0.57 -0.2
369,907 + CCNA_00353 0.57 +0.3
369,907 + CCNA_00353 0.57 -1.3
369,907 + CCNA_00353 0.57 +0.9
369,915 - CCNA_00353 0.58 +0.5
369,915 - CCNA_00353 0.58 +2.5
369,915 - CCNA_00353 0.58 -0.1
369,937 - CCNA_00353 0.60 +1.5
369,941 - CCNA_00353 0.60 +1.5
369,982 + CCNA_00353 0.64 -2.3
369,982 + CCNA_00353 0.64 -0.1
370,017 - CCNA_00353 0.67 -0.3
370,022 - CCNA_00353 0.68 -0.1
370,027 + CCNA_00353 0.68 -0.6
370,027 + CCNA_00353 0.68 -1.9
370,045 + CCNA_00353 0.70 -2.8
370,053 - CCNA_00353 0.71 +1.9
370,071 + CCNA_00353 0.72 -0.3
370,079 - CCNA_00353 0.73 -1.4
370,080 + CCNA_00353 0.73 +0.9
370,080 + CCNA_00353 0.73 -0.3
370,404 + +3.4
370,411 + +3.3
370,412 - +0.3
370,419 - +0.2
370,431 + +5.5
370,437 - +0.9
370,444 - -1.1
370,466 + +3.9
370,495 + +3.6
370,505 + +3.3
370,600 - CCNA_00354 0.22 -1.3
370,610 - CCNA_00354 0.23 +1.5
370,640 + CCNA_00354 0.28 +3.6
370,640 + CCNA_00354 0.28 +3.5
370,665 + CCNA_00354 0.31 +3.5
370,666 - CCNA_00354 0.31 -0.8
370,674 - CCNA_00354 0.32 -1.0
370,684 + CCNA_00354 0.34 +3.7
370,684 + CCNA_00354 0.34 +3.6
370,725 - CCNA_00354 0.40 +0.5
370,739 - CCNA_00354 0.42 -0.1
370,805 + CCNA_00354 0.51 +3.8
370,840 + CCNA_00354 0.56 +3.9
370,840 + CCNA_00354 0.56 +3.2
370,840 + CCNA_00354 0.56 +3.2
370,840 + CCNA_00354 0.56 +3.1
370,840 + CCNA_00354 0.56 +3.7
370,846 + CCNA_00354 0.57 +3.5
370,859 - CCNA_00354 0.58 -0.3
370,881 + CCNA_00354 0.62 +3.4
370,961 + CCNA_00354 0.73 +2.8
370,961 + CCNA_00354 0.73 +2.6
370,971 + CCNA_00354 0.74 -0.5
370,983 - CCNA_00354 0.76 -2.3
371,012 + CCNA_00354 0.80 +2.8
371,030 + CCNA_00354 0.83 +2.5
371,098 + +3.1
371,146 + +3.1
371,146 + +2.5
371,146 + +3.1
371,146 + +1.7
371,154 - +0.2
371,159 - -0.1
371,167 + +1.8
371,234 + +2.5
371,277 + -0.4
371,292 - -2.5
371,338 - -0.5
371,363 - +3.0
371,370 + -1.6
371,372 - -0.1

Or see this region's nucleotide sequence