Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00312

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00311 and CCNA_00312 are separated by 55 nucleotidesCCNA_00312 and CCNA_00313 are separated by 84 nucleotides CCNA_00311: CCNA_00311 - Zn-dependent protease family protein, at 324,842 to 326,173 _00311 CCNA_00312: CCNA_00312 - putative membrane spanning protein, at 326,229 to 326,630 _00312 CCNA_00313: CCNA_00313 - peptidase, M14 family, at 326,715 to 328,544 _00313 Position (kb) 326 327Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 325.292 kb on - strand, within CCNA_00311at 325.294 kb on + strand, within CCNA_00311at 325.305 kb on - strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.312 kb on + strand, within CCNA_00311at 325.314 kb on - strand, within CCNA_00311at 325.320 kb on - strand, within CCNA_00311at 325.331 kb on + strand, within CCNA_00311at 325.419 kb on - strand, within CCNA_00311at 325.522 kb on - strand, within CCNA_00311at 325.523 kb on + strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.531 kb on - strand, within CCNA_00311at 325.538 kb on + strand, within CCNA_00311at 325.607 kb on + strand, within CCNA_00311at 325.613 kb on + strand, within CCNA_00311at 325.613 kb on + strand, within CCNA_00311at 325.615 kb on - strand, within CCNA_00311at 325.654 kb on - strand, within CCNA_00311at 325.671 kb on - strand, within CCNA_00311at 325.695 kb on + strand, within CCNA_00311at 325.758 kb on + strand, within CCNA_00311at 325.765 kb on - strand, within CCNA_00311at 325.766 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.780 kb on - strand, within CCNA_00311at 325.807 kb on - strand, within CCNA_00311at 325.829 kb on - strand, within CCNA_00311at 325.838 kb on - strand, within CCNA_00311at 325.848 kb on - strand, within CCNA_00311at 325.935 kb on + strand, within CCNA_00311at 325.945 kb on + strand, within CCNA_00311at 325.970 kb on - strand, within CCNA_00311at 325.984 kb on + strand, within CCNA_00311at 326.025 kb on + strand, within CCNA_00311at 326.031 kb on - strand, within CCNA_00311at 326.040 kb on + strandat 326.040 kb on + strandat 326.040 kb on + strandat 326.050 kb on + strandat 326.050 kb on + strandat 326.058 kb on - strandat 326.127 kb on + strandat 326.185 kb on - strandat 326.193 kb on - strandat 326.201 kb on - strandat 326.201 kb on - strandat 326.201 kb on - strandat 326.262 kb on + strandat 326.269 kb on + strandat 326.270 kb on - strand, within CCNA_00312at 326.276 kb on - strand, within CCNA_00312at 326.276 kb on - strand, within CCNA_00312at 326.277 kb on - strand, within CCNA_00312at 326.328 kb on + strand, within CCNA_00312at 326.336 kb on + strand, within CCNA_00312at 326.344 kb on - strand, within CCNA_00312at 326.364 kb on + strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.377 kb on - strand, within CCNA_00312at 326.378 kb on - strand, within CCNA_00312at 326.415 kb on + strand, within CCNA_00312at 326.423 kb on - strand, within CCNA_00312at 326.505 kb on - strand, within CCNA_00312at 326.516 kb on + strand, within CCNA_00312at 326.519 kb on - strand, within CCNA_00312at 326.521 kb on + strand, within CCNA_00312at 326.587 kb on - strand, within CCNA_00312at 326.598 kb on - strandat 326.598 kb on - strandat 326.600 kb on + strandat 326.653 kb on - strandat 326.653 kb on - strandat 326.748 kb on - strandat 326.748 kb on - strandat 326.748 kb on - strandat 326.759 kb on - strandat 326.761 kb on + strandat 326.779 kb on - strandat 326.790 kb on + strandat 326.790 kb on + strandat 326.818 kb on + strandat 326.828 kb on - strandat 326.905 kb on + strand, within CCNA_00313at 326.931 kb on + strand, within CCNA_00313at 326.974 kb on - strand, within CCNA_00313at 326.976 kb on + strand, within CCNA_00313at 327.066 kb on + strand, within CCNA_00313at 327.081 kb on - strand, within CCNA_00313at 327.081 kb on - strand, within CCNA_00313at 327.093 kb on + strand, within CCNA_00313at 327.101 kb on - strand, within CCNA_00313at 327.105 kb on + strand, within CCNA_00313at 327.127 kb on + strand, within CCNA_00313at 327.133 kb on + strand, within CCNA_00313at 327.186 kb on + strand, within CCNA_00313at 327.191 kb on + strand, within CCNA_00313at 327.204 kb on - strand, within CCNA_00313at 327.204 kb on - strand, within CCNA_00313at 327.206 kb on + strand, within CCNA_00313at 327.240 kb on + strand, within CCNA_00313at 327.254 kb on - strand, within CCNA_00313at 327.294 kb on + strand, within CCNA_00313at 327.302 kb on - strand, within CCNA_00313at 327.302 kb on - strand, within CCNA_00313at 327.302 kb on - strand, within CCNA_00313at 327.304 kb on + strand, within CCNA_00313at 327.312 kb on - strand, within CCNA_00313at 327.312 kb on - strand, within CCNA_00313at 327.341 kb on + strand, within CCNA_00313at 327.374 kb on - strand, within CCNA_00313at 327.518 kb on + strand, within CCNA_00313at 327.521 kb on - strand, within CCNA_00313at 327.521 kb on - strand, within CCNA_00313at 327.533 kb on + strand, within CCNA_00313at 327.541 kb on - strand, within CCNA_00313at 327.544 kb on - strand, within CCNA_00313at 327.571 kb on + strand, within CCNA_00313at 327.574 kb on - strand, within CCNA_00313at 327.579 kb on - strand, within CCNA_00313at 327.580 kb on - strand, within CCNA_00313at 327.595 kb on + strand, within CCNA_00313

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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325,292 - CCNA_00311 0.34 +1.0
325,294 + CCNA_00311 0.34 +2.1
325,305 - CCNA_00311 0.35 +0.8
325,312 + CCNA_00311 0.35 -0.8
325,312 + CCNA_00311 0.35 -0.3
325,314 - CCNA_00311 0.35 +1.1
325,320 - CCNA_00311 0.36 +1.4
325,331 + CCNA_00311 0.37 +0.2
325,419 - CCNA_00311 0.43 +0.8
325,522 - CCNA_00311 0.51 -0.1
325,523 + CCNA_00311 0.51 +0.1
325,531 - CCNA_00311 0.52 +0.8
325,531 - CCNA_00311 0.52 +3.1
325,538 + CCNA_00311 0.52 -0.4
325,607 + CCNA_00311 0.57 +1.5
325,613 + CCNA_00311 0.58 -2.0
325,613 + CCNA_00311 0.58 -0.1
325,615 - CCNA_00311 0.58 +0.4
325,654 - CCNA_00311 0.61 +0.7
325,671 - CCNA_00311 0.62 -1.4
325,695 + CCNA_00311 0.64 +0.9
325,758 + CCNA_00311 0.69 -0.5
325,765 - CCNA_00311 0.69 +1.1
325,766 - CCNA_00311 0.69 +1.8
325,780 - CCNA_00311 0.70 +1.0
325,780 - CCNA_00311 0.70 +0.6
325,807 - CCNA_00311 0.72 +1.5
325,829 - CCNA_00311 0.74 +1.6
325,838 - CCNA_00311 0.75 +4.2
325,848 - CCNA_00311 0.76 +0.4
325,935 + CCNA_00311 0.82 -0.9
325,945 + CCNA_00311 0.83 -1.9
325,970 - CCNA_00311 0.85 -0.2
325,984 + CCNA_00311 0.86 +1.5
326,025 + CCNA_00311 0.89 +1.2
326,031 - CCNA_00311 0.89 +0.9
326,040 + +2.5
326,040 + +1.5
326,040 + +0.5
326,050 + -0.1
326,050 + +1.9
326,058 - +1.1
326,127 + +1.5
326,185 - +2.4
326,193 - +1.1
326,201 - +1.5
326,201 - +2.2
326,201 - +1.4
326,262 + +0.2
326,269 + -1.6
326,270 - CCNA_00312 0.10 +2.0
326,276 - CCNA_00312 0.12 +1.7
326,276 - CCNA_00312 0.12 +1.8
326,277 - CCNA_00312 0.12 +1.4
326,328 + CCNA_00312 0.25 -0.4
326,336 + CCNA_00312 0.27 -1.2
326,344 - CCNA_00312 0.29 +2.2
326,364 + CCNA_00312 0.34 +0.0
326,377 - CCNA_00312 0.37 +2.0
326,377 - CCNA_00312 0.37 +2.1
326,377 - CCNA_00312 0.37 +2.4
326,378 - CCNA_00312 0.37 +2.0
326,415 + CCNA_00312 0.46 -1.2
326,423 - CCNA_00312 0.48 +1.0
326,505 - CCNA_00312 0.69 +1.8
326,516 + CCNA_00312 0.71 +1.3
326,519 - CCNA_00312 0.72 +0.2
326,521 + CCNA_00312 0.73 +2.5
326,587 - CCNA_00312 0.89 -1.3
326,598 - +0.5
326,598 - +1.0
326,600 + -0.5
326,653 - +1.0
326,653 - +0.3
326,748 - +0.3
326,748 - +0.1
326,748 - +1.5
326,759 - -0.1
326,761 + -1.1
326,779 - +0.6
326,790 + +0.4
326,790 + -1.9
326,818 + -1.6
326,828 - -0.8
326,905 + CCNA_00313 0.10 +0.9
326,931 + CCNA_00313 0.12 -1.2
326,974 - CCNA_00313 0.14 +0.3
326,976 + CCNA_00313 0.14 +2.5
327,066 + CCNA_00313 0.19 +1.9
327,081 - CCNA_00313 0.20 -0.0
327,081 - CCNA_00313 0.20 +0.4
327,093 + CCNA_00313 0.21 -1.4
327,101 - CCNA_00313 0.21 -1.3
327,105 + CCNA_00313 0.21 +1.5
327,127 + CCNA_00313 0.23 -0.3
327,133 + CCNA_00313 0.23 -0.1
327,186 + CCNA_00313 0.26 +1.0
327,191 + CCNA_00313 0.26 -0.1
327,204 - CCNA_00313 0.27 +0.3
327,204 - CCNA_00313 0.27 +1.5
327,206 + CCNA_00313 0.27 -0.2
327,240 + CCNA_00313 0.29 -1.2
327,254 - CCNA_00313 0.29 +0.0
327,294 + CCNA_00313 0.32 +0.2
327,302 - CCNA_00313 0.32 +0.1
327,302 - CCNA_00313 0.32 +0.9
327,302 - CCNA_00313 0.32 -1.7
327,304 + CCNA_00313 0.32 +1.5
327,312 - CCNA_00313 0.33 +0.6
327,312 - CCNA_00313 0.33 +0.9
327,341 + CCNA_00313 0.34 -0.3
327,374 - CCNA_00313 0.36 -0.2
327,518 + CCNA_00313 0.44 -0.6
327,521 - CCNA_00313 0.44 +0.9
327,521 - CCNA_00313 0.44 -1.2
327,533 + CCNA_00313 0.45 +2.5
327,541 - CCNA_00313 0.45 +0.5
327,544 - CCNA_00313 0.45 -0.8
327,571 + CCNA_00313 0.47 -1.5
327,574 - CCNA_00313 0.47 -1.9
327,579 - CCNA_00313 0.47 -1.2
327,580 - CCNA_00313 0.47 +0.9
327,595 + CCNA_00313 0.48 +0.5

Or see this region's nucleotide sequence