Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00267 and CCNA_00268 are separated by 257 nucleotides CCNA_00268 and CCNA_00269 are separated by 145 nucleotides CCNA_00269 and CCNA_00270 are separated by 126 nucleotides
CCNA_00267: CCNA_00267 - MutT-like protein, at 280,931 to 281,872
_00267
CCNA_00268: CCNA_00268 - DNA polymerase III subunit gamma/tau, at 282,130 to 283,956
_00268
CCNA_00269: CCNA_00269 - YbaB/EbfC-family DNA-binding protein, at 284,102 to 284,431
_00269
CCNA_00270: CCNA_00270 - Recombination protein recR, at 284,558 to 285,160
_00270
Position (kb) 282
283
284 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 281.132 kb on - strand, within CCNA_00267 at 281.133 kb on - strand, within CCNA_00267 at 281.133 kb on - strand, within CCNA_00267 at 281.136 kb on + strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.143 kb on - strand, within CCNA_00267 at 281.222 kb on - strand, within CCNA_00267 at 281.246 kb on + strand, within CCNA_00267 at 281.261 kb on - strand, within CCNA_00267 at 281.261 kb on - strand, within CCNA_00267 at 281.351 kb on + strand, within CCNA_00267 at 281.378 kb on - strand, within CCNA_00267 at 281.391 kb on - strand, within CCNA_00267 at 281.408 kb on - strand, within CCNA_00267 at 281.416 kb on - strand, within CCNA_00267 at 281.421 kb on - strand, within CCNA_00267 at 281.477 kb on - strand, within CCNA_00267 at 281.532 kb on - strand, within CCNA_00267 at 281.548 kb on - strand, within CCNA_00267 at 281.548 kb on - strand, within CCNA_00267 at 281.614 kb on + strand, within CCNA_00267 at 281.619 kb on + strand, within CCNA_00267 at 281.619 kb on + strand, within CCNA_00267 at 281.622 kb on - strand, within CCNA_00267 at 281.627 kb on - strand, within CCNA_00267 at 281.627 kb on - strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.651 kb on + strand, within CCNA_00267 at 281.658 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.659 kb on - strand, within CCNA_00267 at 281.682 kb on - strand, within CCNA_00267 at 281.684 kb on + strand, within CCNA_00267 at 281.720 kb on - strand, within CCNA_00267 at 281.729 kb on - strand, within CCNA_00267 at 281.729 kb on - strand, within CCNA_00267 at 281.787 kb on - strand at 281.800 kb on + strand at 281.825 kb on + strand at 281.825 kb on + strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.833 kb on - strand at 281.834 kb on - strand at 281.854 kb on - strand at 281.855 kb on - strand at 281.857 kb on - strand at 281.868 kb on + strand at 281.873 kb on + strand at 281.873 kb on + strand at 281.876 kb on + strand at 281.876 kb on + strand at 281.876 kb on - strand at 281.878 kb on + strand at 281.880 kb on + strand at 281.886 kb on - strand at 281.886 kb on - strand at 281.888 kb on - strand at 281.908 kb on + strand at 281.916 kb on - strand at 281.918 kb on - strand at 282.080 kb on + strand at 282.113 kb on + strand at 282.113 kb on + strand at 282.115 kb on + strand at 282.119 kb on - strand at 282.216 kb on + strand at 282.266 kb on - strand at 282.291 kb on + strand at 283.924 kb on + strand at 283.979 kb on - strand at 283.988 kb on + strand at 283.988 kb on + strand at 283.989 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 283.996 kb on - strand at 284.032 kb on + strand at 284.050 kb on + strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.058 kb on - strand at 284.059 kb on - strand at 284.108 kb on - strand at 284.121 kb on + strand at 284.122 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.131 kb on + strand at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.139 kb on - strand, within CCNA_00269 at 284.140 kb on - strand, within CCNA_00269 at 284.182 kb on + strand, within CCNA_00269 at 284.182 kb on + strand, within CCNA_00269 at 284.185 kb on - strand, within CCNA_00269 at 284.220 kb on + strand, within CCNA_00269 at 284.220 kb on + strand, within CCNA_00269 at 284.228 kb on + strand, within CCNA_00269 at 284.228 kb on - strand, within CCNA_00269 at 284.238 kb on + strand, within CCNA_00269 at 284.239 kb on + strand, within CCNA_00269 at 284.240 kb on + strand, within CCNA_00269 at 284.260 kb on + strand, within CCNA_00269 at 284.290 kb on + strand, within CCNA_00269 at 284.291 kb on + strand, within CCNA_00269 at 284.309 kb on - strand, within CCNA_00269 at 284.311 kb on + strand, within CCNA_00269 at 284.314 kb on - strand, within CCNA_00269 at 284.319 kb on - strand, within CCNA_00269 at 284.338 kb on + strand, within CCNA_00269 at 284.349 kb on + strand, within CCNA_00269 at 284.359 kb on + strand, within CCNA_00269 at 284.359 kb on + strand, within CCNA_00269 at 284.377 kb on - strand, within CCNA_00269 at 284.425 kb on + strand at 284.448 kb on + strand at 284.462 kb on - strand at 284.462 kb on - strand at 284.464 kb on + strand at 284.464 kb on + strand at 284.464 kb on + strand at 284.465 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.470 kb on + strand at 284.472 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.478 kb on - strand at 284.482 kb on + strand at 284.482 kb on + strand at 284.485 kb on - strand at 284.490 kb on - strand at 284.505 kb on + strand at 284.505 kb on + strand at 284.505 kb on + strand at 284.513 kb on - strand at 284.513 kb on - strand at 284.514 kb on - strand at 284.524 kb on - strand at 284.538 kb on + strand at 284.554 kb on + strand at 284.569 kb on + strand at 284.569 kb on + strand at 284.613 kb on - strand at 284.648 kb on + strand, within CCNA_00270 at 284.648 kb on + strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.656 kb on - strand, within CCNA_00270 at 284.695 kb on - strand, within CCNA_00270 at 284.716 kb on + strand, within CCNA_00270 at 284.716 kb on + strand, within CCNA_00270 at 284.724 kb on - strand, within CCNA_00270 at 284.724 kb on - strand, within CCNA_00270 at 284.806 kb on + strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.841 kb on - strand, within CCNA_00270 at 284.842 kb on - strand, within CCNA_00270 at 284.842 kb on - strand, within CCNA_00270 at 284.846 kb on - strand, within CCNA_00270 at 284.846 kb on - strand, within CCNA_00270 at 284.884 kb on + strand, within CCNA_00270 at 284.905 kb on + strand, within CCNA_00270 at 284.910 kb on + strand, within CCNA_00270
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 281,132 - CCNA_00267 0.21 +0.6 281,133 - CCNA_00267 0.21 +2.1 281,133 - CCNA_00267 0.21 +1.0 281,136 + CCNA_00267 0.22 -0.6 281,143 - CCNA_00267 0.23 +1.7 281,143 - CCNA_00267 0.23 +1.4 281,143 - CCNA_00267 0.23 +1.3 281,143 - CCNA_00267 0.23 +0.9 281,222 - CCNA_00267 0.31 +0.5 281,246 + CCNA_00267 0.33 -1.2 281,261 - CCNA_00267 0.35 +1.2 281,261 - CCNA_00267 0.35 -1.9 281,351 + CCNA_00267 0.45 -0.3 281,378 - CCNA_00267 0.47 +1.1 281,391 - CCNA_00267 0.49 +1.8 281,408 - CCNA_00267 0.51 -0.4 281,416 - CCNA_00267 0.51 +1.1 281,421 - CCNA_00267 0.52 -0.3 281,477 - CCNA_00267 0.58 +1.1 281,532 - CCNA_00267 0.64 +0.0 281,548 - CCNA_00267 0.65 +0.8 281,548 - CCNA_00267 0.65 +1.0 281,614 + CCNA_00267 0.73 -1.2 281,619 + CCNA_00267 0.73 +1.5 281,619 + CCNA_00267 0.73 +0.2 281,622 - CCNA_00267 0.73 +0.7 281,627 - CCNA_00267 0.74 -0.1 281,627 - CCNA_00267 0.74 +0.1 281,651 + CCNA_00267 0.76 +1.5 281,651 + CCNA_00267 0.76 -0.8 281,651 + CCNA_00267 0.76 -0.3 281,651 + CCNA_00267 0.76 +1.5 281,651 + CCNA_00267 0.76 +0.9 281,651 + CCNA_00267 0.76 -1.9 281,658 - CCNA_00267 0.77 +0.3 281,659 - CCNA_00267 0.77 +0.5 281,659 - CCNA_00267 0.77 +0.6 281,659 - CCNA_00267 0.77 +0.4 281,659 - CCNA_00267 0.77 +1.1 281,682 - CCNA_00267 0.80 +0.9 281,684 + CCNA_00267 0.80 -0.3 281,720 - CCNA_00267 0.84 -1.5 281,729 - CCNA_00267 0.85 -0.4 281,729 - CCNA_00267 0.85 +1.3 281,787 - +0.4 281,800 + -1.3 281,825 + -0.3 281,825 + -0.1 281,833 - +0.2 281,833 - -0.7 281,833 - +0.4 281,833 - +2.5 281,833 - -0.9 281,833 - +1.2 281,833 - +0.1 281,833 - +0.5 281,834 - -1.0 281,854 - +1.5 281,855 - -0.7 281,857 - -0.4 281,868 + -0.1 281,873 + -1.8 281,873 + +0.5 281,876 + -0.9 281,876 + -1.9 281,876 - +0.6 281,878 + +0.5 281,880 + -1.3 281,886 - -1.3 281,886 - +1.5 281,888 - -0.3 281,908 + +2.5 281,916 - +0.9 281,918 - +2.5 282,080 + +1.4 282,113 + -1.5 282,113 + +0.1 282,115 + -1.3 282,119 - +1.5 282,216 + +1.6 282,266 - -0.3 282,291 + +2.0 283,924 + +2.7 283,979 - +0.3 283,988 + +1.5 283,988 + +1.2 283,989 - +0.0 283,996 - +0.8 283,996 - +0.4 283,996 - +0.2 283,996 - -0.8 283,996 - +0.2 283,996 - -0.1 283,996 - -0.3 283,996 - -0.2 284,032 + +0.9 284,050 + +2.1 284,058 - -0.8 284,058 - -0.9 284,058 - -1.5 284,058 - -0.6 284,058 - +1.5 284,058 - +0.9 284,059 - +0.4 284,108 - -0.8 284,121 + +0.9 284,122 + +0.8 284,131 + -0.5 284,131 + +0.5 284,131 + -0.9 284,131 + +0.5 284,131 + +2.1 284,131 + +0.7 284,139 - CCNA_00269 0.11 +2.6 284,139 - CCNA_00269 0.11 +2.7 284,139 - +3.5 284,139 - CCNA_00269 0.11 +3.2 284,139 - CCNA_00269 0.11 +2.7 284,139 - CCNA_00269 0.11 +2.7 284,140 - CCNA_00269 0.12 +3.6 284,182 + CCNA_00269 0.24 +0.5 284,182 + CCNA_00269 0.24 -0.7 284,185 - CCNA_00269 0.25 -1.2 284,220 + CCNA_00269 0.36 +1.5 284,220 + CCNA_00269 0.36 +0.8 284,228 + CCNA_00269 0.38 -0.8 284,228 - CCNA_00269 0.38 +2.5 284,238 + CCNA_00269 0.41 +1.7 284,239 + CCNA_00269 0.42 +0.6 284,240 + CCNA_00269 0.42 +1.3 284,260 + CCNA_00269 0.48 -0.8 284,290 + CCNA_00269 0.57 +0.9 284,291 + CCNA_00269 0.57 +0.2 284,309 - CCNA_00269 0.63 -0.5 284,311 + CCNA_00269 0.63 +0.1 284,314 - CCNA_00269 0.64 +1.5 284,319 - CCNA_00269 0.66 -0.1 284,338 + CCNA_00269 0.72 +0.4 284,349 + CCNA_00269 0.75 +1.1 284,359 + CCNA_00269 0.78 +0.5 284,359 + CCNA_00269 0.78 +1.7 284,377 - CCNA_00269 0.83 +2.5 284,425 + +1.4 284,448 + +1.9 284,462 - +1.4 284,462 - +0.5 284,464 + +2.3 284,464 + +2.0 284,464 + +1.9 284,465 + +2.4 284,470 + +1.0 284,470 + +1.1 284,470 + +1.1 284,470 + +0.5 284,470 + +0.7 284,470 + +0.5 284,472 - +2.5 284,478 - +3.5 284,478 - +0.8 284,478 - +1.6 284,478 - +2.0 284,478 - +1.9 284,482 + +1.1 284,482 + +2.0 284,485 - +0.5 284,490 - -0.1 284,505 + +1.2 284,505 + +1.3 284,505 + +1.3 284,513 - +1.8 284,513 - -0.2 284,514 - -0.2 284,524 - +0.7 284,538 + +1.3 284,554 + +0.1 284,569 + +0.5 284,569 + +1.0 284,613 - +1.5 284,648 + CCNA_00270 0.15 +1.6 284,648 + CCNA_00270 0.15 +1.4 284,656 - CCNA_00270 0.16 -0.3 284,656 - CCNA_00270 0.16 -0.6 284,656 - CCNA_00270 0.16 +0.1 284,656 - CCNA_00270 0.16 -1.7 284,695 - CCNA_00270 0.23 -0.3 284,716 + CCNA_00270 0.26 +0.4 284,716 + CCNA_00270 0.26 +1.2 284,724 - CCNA_00270 0.28 -1.2 284,724 - CCNA_00270 0.28 +0.5 284,806 + CCNA_00270 0.41 +0.9 284,841 - CCNA_00270 0.47 +1.5 284,841 - CCNA_00270 0.47 +0.9 284,841 - CCNA_00270 0.47 -1.0 284,842 - CCNA_00270 0.47 -0.8 284,842 - CCNA_00270 0.47 -0.9 284,846 - CCNA_00270 0.48 -0.8 284,846 - CCNA_00270 0.48 -0.8 284,884 + CCNA_00270 0.54 -0.1 284,905 + CCNA_00270 0.58 +1.5 284,910 + CCNA_00270 0.58 +2.6
Or see this region's nucleotide sequence