Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00134

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00133 and CCNA_00134 are separated by 94 nucleotidesCCNA_00134 and CCNA_00135 are separated by 25 nucleotidesCCNA_00135 and CCNA_00136 overlap by 4 nucleotides CCNA_00133: CCNA_00133 - radical SAM family enzyme, at 142,680 to 143,894 _00133 CCNA_00134: CCNA_00134 - surface protein, at 143,989 to 144,417 _00134 CCNA_00135: CCNA_00135 - trypsin-like peptidase, at 144,443 to 145,276 _00135 CCNA_00136: CCNA_00136 - AmpG protein, at 145,273 to 146,952 _00136 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 143.013 kb on + strand, within CCNA_00133at 143.044 kb on - strand, within CCNA_00133at 143.072 kb on + strand, within CCNA_00133at 143.085 kb on - strand, within CCNA_00133at 143.097 kb on + strand, within CCNA_00133at 143.097 kb on + strand, within CCNA_00133at 143.100 kb on - strand, within CCNA_00133at 143.102 kb on + strand, within CCNA_00133at 143.118 kb on - strand, within CCNA_00133at 143.133 kb on - strand, within CCNA_00133at 143.174 kb on + strand, within CCNA_00133at 143.206 kb on - strand, within CCNA_00133at 143.232 kb on + strand, within CCNA_00133at 143.232 kb on + strand, within CCNA_00133at 143.240 kb on - strand, within CCNA_00133at 143.260 kb on - strand, within CCNA_00133at 143.261 kb on - strand, within CCNA_00133at 143.422 kb on + strand, within CCNA_00133at 143.422 kb on + strand, within CCNA_00133at 143.515 kb on + strand, within CCNA_00133at 143.515 kb on + strand, within CCNA_00133at 143.515 kb on + strand, within CCNA_00133at 143.523 kb on - strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.525 kb on + strand, within CCNA_00133at 143.533 kb on - strand, within CCNA_00133at 143.552 kb on - strand, within CCNA_00133at 143.559 kb on + strand, within CCNA_00133at 143.569 kb on - strand, within CCNA_00133at 143.582 kb on + strand, within CCNA_00133at 143.610 kb on - strand, within CCNA_00133at 143.611 kb on - strand, within CCNA_00133at 143.611 kb on - strand, within CCNA_00133at 143.611 kb on - strand, within CCNA_00133at 143.612 kb on + strand, within CCNA_00133at 143.612 kb on + strand, within CCNA_00133at 143.620 kb on - strand, within CCNA_00133at 143.632 kb on + strand, within CCNA_00133at 143.633 kb on + strand, within CCNA_00133at 143.656 kb on - strand, within CCNA_00133at 143.705 kb on - strand, within CCNA_00133at 143.720 kb on + strand, within CCNA_00133at 143.797 kb on - strandat 143.831 kb on - strandat 143.875 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.889 kb on + strandat 143.897 kb on - strandat 143.897 kb on - strandat 143.897 kb on - strandat 143.920 kb on + strandat 143.925 kb on + strandat 143.944 kb on + strandat 143.944 kb on + strandat 143.949 kb on + strandat 143.968 kb on + strandat 144.016 kb on + strandat 144.080 kb on - strand, within CCNA_00134at 144.130 kb on + strand, within CCNA_00134at 144.130 kb on + strand, within CCNA_00134at 144.180 kb on + strand, within CCNA_00134at 144.246 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.368 kb on + strand, within CCNA_00134at 144.390 kb on + strandat 144.393 kb on - strandat 144.406 kb on + strandat 144.428 kb on + strandat 144.436 kb on - strandat 144.445 kb on + strandat 144.468 kb on + strandat 144.470 kb on - strandat 144.472 kb on + strandat 144.472 kb on + strandat 144.472 kb on + strandat 144.472 kb on + strandat 144.480 kb on - strandat 144.480 kb on - strandat 144.480 kb on - strandat 144.487 kb on + strandat 144.507 kb on - strandat 144.771 kb on - strand, within CCNA_00135at 144.771 kb on - strand, within CCNA_00135at 144.771 kb on - strand, within CCNA_00135at 144.794 kb on + strand, within CCNA_00135at 144.811 kb on - strand, within CCNA_00135at 144.850 kb on + strand, within CCNA_00135at 144.872 kb on + strand, within CCNA_00135at 144.880 kb on - strand, within CCNA_00135at 144.961 kb on + strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.979 kb on - strand, within CCNA_00135at 144.979 kb on - strand, within CCNA_00135at 144.986 kb on + strand, within CCNA_00135at 145.004 kb on + strand, within CCNA_00135at 145.079 kb on - strand, within CCNA_00135at 145.108 kb on + strand, within CCNA_00135at 145.116 kb on - strand, within CCNA_00135at 145.127 kb on + strand, within CCNA_00135at 145.129 kb on + strand, within CCNA_00135at 145.129 kb on + strand, within CCNA_00135at 145.137 kb on - strand, within CCNA_00135at 145.289 kb on + strandat 145.297 kb on - strandat 145.342 kb on + strandat 145.342 kb on + strandat 145.342 kb on + strandat 145.345 kb on - strandat 145.350 kb on - strandat 145.378 kb on - strandat 145.386 kb on + strandat 145.407 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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143,013 + CCNA_00133 0.27 +0.5
143,044 - CCNA_00133 0.30 -1.9
143,072 + CCNA_00133 0.32 -0.1
143,085 - CCNA_00133 0.33 -2.3
143,097 + CCNA_00133 0.34 +0.5
143,097 + CCNA_00133 0.34 +1.5
143,100 - CCNA_00133 0.35 -0.7
143,102 + CCNA_00133 0.35 +0.2
143,118 - CCNA_00133 0.36 -0.5
143,133 - CCNA_00133 0.37 +0.2
143,174 + CCNA_00133 0.41 -0.5
143,206 - CCNA_00133 0.43 -0.7
143,232 + CCNA_00133 0.45 +1.7
143,232 + CCNA_00133 0.45 +0.9
143,240 - CCNA_00133 0.46 -1.4
143,260 - CCNA_00133 0.48 -1.4
143,261 - CCNA_00133 0.48 +1.5
143,422 + CCNA_00133 0.61 -0.7
143,422 + CCNA_00133 0.61 +0.8
143,515 + CCNA_00133 0.69 +0.8
143,515 + CCNA_00133 0.69 +1.9
143,515 + CCNA_00133 0.69 +0.4
143,523 - CCNA_00133 0.69 -0.1
143,525 + CCNA_00133 0.70 -0.2
143,525 + CCNA_00133 0.70 +2.5
143,525 + CCNA_00133 0.70 +0.9
143,525 + CCNA_00133 0.70 -0.9
143,525 + CCNA_00133 0.70 +1.5
143,525 + CCNA_00133 0.70 +0.0
143,525 + CCNA_00133 0.70 +0.7
143,525 + CCNA_00133 0.70 -0.0
143,533 - CCNA_00133 0.70 -0.5
143,552 - CCNA_00133 0.72 -0.3
143,559 + CCNA_00133 0.72 -0.1
143,569 - CCNA_00133 0.73 +3.3
143,582 + CCNA_00133 0.74 +0.2
143,610 - CCNA_00133 0.77 +3.6
143,611 - CCNA_00133 0.77 +3.6
143,611 - CCNA_00133 0.77 +4.3
143,611 - CCNA_00133 0.77 +3.5
143,612 + CCNA_00133 0.77 -1.0
143,612 + CCNA_00133 0.77 +1.2
143,620 - CCNA_00133 0.77 +0.9
143,632 + CCNA_00133 0.78 -0.3
143,633 + CCNA_00133 0.78 +1.2
143,656 - CCNA_00133 0.80 +0.5
143,705 - CCNA_00133 0.84 -0.7
143,720 + CCNA_00133 0.86 +2.1
143,797 - -1.7
143,831 - +2.6
143,875 + -1.4
143,889 + +0.3
143,889 + +0.0
143,889 + +0.8
143,889 + +0.3
143,889 + +0.7
143,889 + +0.5
143,889 + -0.1
143,897 - -0.8
143,897 - -0.0
143,897 - -0.5
143,920 + -1.0
143,925 + -1.4
143,944 + -0.6
143,944 + -1.5
143,949 + -0.7
143,968 + -0.3
144,016 + +0.9
144,080 - CCNA_00134 0.21 +0.5
144,130 + CCNA_00134 0.33 -1.7
144,130 + CCNA_00134 0.33 +0.9
144,180 + CCNA_00134 0.45 -1.9
144,246 + CCNA_00134 0.60 -2.6
144,306 + CCNA_00134 0.74 +0.9
144,306 + CCNA_00134 0.74 -2.1
144,306 + CCNA_00134 0.74 +0.2
144,306 + CCNA_00134 0.74 -1.5
144,306 + CCNA_00134 0.74 -1.5
144,306 + CCNA_00134 0.74 -1.5
144,314 - CCNA_00134 0.76 +0.5
144,314 - CCNA_00134 0.76 -0.5
144,368 + CCNA_00134 0.88 -1.8
144,390 + -0.8
144,393 - +3.7
144,406 + +0.5
144,428 + +2.4
144,436 - +0.5
144,445 + +1.2
144,468 + +1.9
144,470 - +0.9
144,472 + +1.8
144,472 + -1.1
144,472 + +0.5
144,472 + -0.1
144,480 - -2.4
144,480 - +0.9
144,480 - +0.9
144,487 + -1.3
144,507 - +0.9
144,771 - CCNA_00135 0.39 +0.2
144,771 - CCNA_00135 0.39 +0.9
144,771 - CCNA_00135 0.39 +0.5
144,794 + CCNA_00135 0.42 -0.3
144,811 - CCNA_00135 0.44 +0.5
144,850 + CCNA_00135 0.49 -1.2
144,872 + CCNA_00135 0.51 -0.3
144,880 - CCNA_00135 0.52 -2.1
144,961 + CCNA_00135 0.62 -1.5
144,971 + CCNA_00135 0.63 -0.8
144,971 + CCNA_00135 0.63 +0.5
144,971 + CCNA_00135 0.63 +0.2
144,979 - CCNA_00135 0.64 -1.5
144,979 - CCNA_00135 0.64 -0.3
144,986 + CCNA_00135 0.65 -2.9
145,004 + CCNA_00135 0.67 +0.9
145,079 - CCNA_00135 0.76 -0.3
145,108 + CCNA_00135 0.80 -2.0
145,116 - CCNA_00135 0.81 +1.5
145,127 + CCNA_00135 0.82 +0.2
145,129 + CCNA_00135 0.82 -1.2
145,129 + CCNA_00135 0.82 -0.5
145,137 - CCNA_00135 0.83 -2.0
145,289 + +1.2
145,297 - +0.5
145,342 + +0.9
145,342 + +2.5
145,342 + +0.1
145,345 - +2.1
145,350 - +0.2
145,378 - +2.1
145,386 + -0.3
145,407 + -0.3

Or see this region's nucleotide sequence