Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00096

Experiment: PYE with nitrite 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with nitrite 5 mM
106,418	+				+0.9
106,452	+		CCNA_00095	0.12	+0.9
106,460	-		CCNA_00095	0.13	+1.6
106,460	-		CCNA_00095	0.13	+0.5
106,460	-		CCNA_00095	0.13	+1.0
106,471	+		CCNA_00095	0.14	-1.3
106,471	+		CCNA_00095	0.14	-1.0
106,492	+		CCNA_00095	0.16	-0.8
106,518	+		CCNA_00095	0.18	-0.3
106,518	+		CCNA_00095	0.18	-0.1
106,518	+		CCNA_00095	0.18	+0.0
106,518	+		CCNA_00095	0.18	+0.9
106,518	+		CCNA_00095	0.18	-0.1
106,518	+		CCNA_00095	0.18	-0.5
106,526	-		CCNA_00095	0.19	-0.2
106,526	-		CCNA_00095	0.19	+0.5
106,526	-		CCNA_00095	0.19	-0.2
106,526	-		CCNA_00095	0.19	-1.5
106,526	-		CCNA_00095	0.19	-0.7
106,526	-		CCNA_00095	0.19	-0.1
106,526	-		CCNA_00095	0.19	-1.2
106,555	-		CCNA_00095	0.22	-1.7
106,596	-		CCNA_00095	0.26	+0.3
106,616	-		CCNA_00095	0.28	-0.5
106,642	-		CCNA_00095	0.31	+0.7
106,678	+		CCNA_00095	0.34	-1.7
106,678	+		CCNA_00095	0.34	-2.4
106,686	-		CCNA_00095	0.35	-0.1
106,686	-		CCNA_00095	0.35	+1.8
106,704	+		CCNA_00095	0.37	-0.5
106,704	+		CCNA_00095	0.37	+0.4
106,712	-		CCNA_00095	0.38	-1.0
106,712	-		CCNA_00095	0.38	-3.2
106,735	-		CCNA_00095	0.40	-0.8
106,842	-		CCNA_00095	0.51	-0.7
106,848	+		CCNA_00095	0.51	-2.0
106,850	-		CCNA_00095	0.52	-1.0
106,856	-		CCNA_00095	0.52	+0.8
106,856	-		CCNA_00095	0.52	+0.2
106,957	-		CCNA_00095	0.62	+0.8
106,957	-		CCNA_00095	0.62	-0.5
106,964	+		CCNA_00095	0.63	+0.9
106,969	+		CCNA_00095	0.64	-0.7
106,972	-		CCNA_00095	0.64	-1.3
106,972	-		CCNA_00095	0.64	-1.9
106,977	-		CCNA_00095	0.64	-1.0
107,049	-		CCNA_00095	0.72	-0.7
107,100	-		CCNA_00095	0.77	-0.5
107,121	+		CCNA_00095	0.79	-0.7
107,134	-		CCNA_00095	0.80	-2.0
107,145	-		CCNA_00095	0.81	+0.5
107,169	+		CCNA_00095	0.84	-1.9
107,169	+		CCNA_00095	0.84	-1.4
107,177	-		CCNA_00095	0.84	-2.1
107,177	-		CCNA_00095	0.84	+0.2
107,213	+		CCNA_00095	0.88	-0.5
107,237	+				+1.0
107,237	+				+0.6
107,251	-				+0.2
107,256	-				+0.1
107,273	-				-0.2
107,301	-				-2.7
107,315	+				-2.3
107,323	-				+0.5
107,347	-				+0.2
107,370	-				+3.1
107,377	-				-1.8
107,395	-				-1.1
107,469	-				+0.2
107,551	+		CCNA_00096	0.17	+1.9
107,568	+		CCNA_00096	0.19	+0.4
107,568	+		CCNA_00096	0.19	+0.2
107,568	+		CCNA_00096	0.19	+0.6
107,568	+		CCNA_00096	0.19	+0.3
107,576	-		CCNA_00096	0.20	+0.5
107,640	+		CCNA_00096	0.27	+0.6
107,654	-		CCNA_00096	0.29	-0.3
107,658	+		CCNA_00096	0.29	+1.1
107,666	-		CCNA_00096	0.30	-1.2
107,695	-		CCNA_00096	0.33	+2.5
107,696	+		CCNA_00096	0.33	-0.3
107,696	+		CCNA_00096	0.33	-1.7
107,698	-		CCNA_00096	0.34	+0.6
107,704	-		CCNA_00096	0.34	+0.0
107,718	-		CCNA_00096	0.36	-2.3
107,736	+		CCNA_00096	0.38	-0.2
107,770	-		CCNA_00096	0.42	+0.6
107,779	-		CCNA_00096	0.43	+0.5
107,795	+		CCNA_00096	0.45	+2.1
107,803	-		CCNA_00096	0.46	-2.0
107,805	-		CCNA_00096	0.46	-0.9
107,883	-		CCNA_00096	0.55	-0.3
107,892	+		CCNA_00096	0.56	-1.3
107,950	-		CCNA_00096	0.62	+1.0
107,972	+		CCNA_00096	0.65	-0.8
107,996	+		CCNA_00096	0.68	+0.2
108,028	+		CCNA_00096	0.71	+0.4
108,036	-		CCNA_00096	0.72	+0.2
108,037	-		CCNA_00096	0.72	-1.5
108,044	+		CCNA_00096	0.73	-0.0
108,110	+		CCNA_00096	0.81	+0.6
108,118	-		CCNA_00096	0.81	+0.9
108,118	-		CCNA_00096	0.81	+2.0
108,118	-		CCNA_00096	0.81	-0.3
108,118	-		CCNA_00096	0.81	+0.2
108,124	+		CCNA_00096	0.82	+0.5
108,132	-		CCNA_00096	0.83	+0.9
108,134	+		CCNA_00096	0.83	+1.8
108,142	-		CCNA_00096	0.84	+2.5
108,203	+				+1.2
108,250	+				+0.1
108,255	+				-0.5
108,257	+				-0.0
108,331	+				+0.0
108,384	-		CCNA_00097	0.11	+0.9
108,403	+		CCNA_00097	0.15	-0.3
108,411	-		CCNA_00097	0.17	-1.4
108,416	-		CCNA_00097	0.18	+0.6
108,459	+		CCNA_00097	0.27	-0.7
108,512	-		CCNA_00097	0.39	-1.9
108,524	-		CCNA_00097	0.41	-1.7
108,529	-		CCNA_00097	0.42	-0.5
108,681	-		CCNA_00097	0.76	+0.2
108,681	-		CCNA_00097	0.76	-1.5
108,880	+				+0.3
108,922	-				-1.0
108,932	-				+2.0
108,937	-				-1.7
108,940	+				-0.6
108,948	-				+1.2
108,948	-				+0.2
108,948	-				-1.2
108,964	+				+0.9
108,964	+				-0.3
108,972	-		CCNA_00098	0.10	-0.5
108,972	-		CCNA_00098	0.10	+0.1
108,974	+		CCNA_00098	0.11	+0.0
109,004	-		CCNA_00098	0.21	+1.3
109,004	-		CCNA_00098	0.21	-0.5
109,016	-		CCNA_00098	0.25	+1.5
109,047	+		CCNA_00098	0.36	+0.2
109,106	+		CCNA_00098	0.56	+1.9
109,106	+		CCNA_00098	0.56	-1.9
109,112	+		CCNA_00098	0.58	+0.9
109,114	-		CCNA_00098	0.59	+0.9
109,126	-		CCNA_00098	0.63	+0.7
109,144	+		CCNA_00098	0.69	+2.5
109,144	+		CCNA_00098	0.69	-1.4
109,145	+		CCNA_00098	0.69	-0.7
109,152	-		CCNA_00098	0.72	+1.9
109,152	-		CCNA_00098	0.72	-0.4
109,169	+		CCNA_00098	0.78	-1.5
109,170	-		CCNA_00098	0.78	-2.1
109,170	-		CCNA_00098	0.78	-2.1
109,206	-				+0.1
109,249	+				-1.0
109,251	-				-0.2
109,251	-				-0.0
109,254	+				-1.2
109,267	-				+0.4