Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00069

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00068 and CCNA_00069 overlap by 4 nucleotidesCCNA_00069 and CCNA_00070 are separated by 72 nucleotides CCNA_00068: CCNA_00068 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 69,794 to 70,804 _00068 CCNA_00069: CCNA_00069 - O-sialoglycoprotein endopeptidase, at 70,801 to 71,904 _00069 CCNA_00070: CCNA_00070 - porphobilinogen deaminase, at 71,977 to 72,945 _00070 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1at 70.784 kb on + strandat 70.784 kb on + strandat 70.784 kb on + strandat 70.785 kb on + strandat 70.785 kb on + strandat 70.793 kb on - strandat 70.807 kb on - strandat 70.838 kb on + strandat 70.851 kb on - strandat 71.967 kb on + strandat 71.975 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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70,784 + -1.7
70,784 + -0.7
70,784 + -0.3
70,785 + -0.1
70,785 + -1.0
70,793 - +0.7
70,807 - +1.0
70,838 + +0.4
70,851 - +1.4
71,967 + -0.3
71,975 - -0.1

Or see this region's nucleotide sequence