Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00053

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00051 and CCNA_00052 are separated by 8 nucleotidesCCNA_00052 and CCNA_00053 are separated by 37 nucleotidesCCNA_00053 and CCNA_00054 overlap by 4 nucleotides CCNA_00051: CCNA_00051 - magnesium and cobalt efflux protein CorC, at 54,296 to 55,222 _00051 CCNA_00052: CCNA_00052 - metal-dependent hydrolase/metalloproteinase, at 55,231 to 55,686 _00052 CCNA_00053: CCNA_00053 - phosphate starvation-inducible protein PhoH, at 55,724 to 56,668 _00053 CCNA_00054: CCNA_00054 - tRNA 2-methylthioadenosine synthase, at 56,665 to 58,011 _00054 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 54.751 kb on + strand, within CCNA_00051at 54.770 kb on + strand, within CCNA_00051at 54.778 kb on - strand, within CCNA_00051at 54.792 kb on - strand, within CCNA_00051at 54.793 kb on - strand, within CCNA_00051at 54.804 kb on + strand, within CCNA_00051at 54.822 kb on - strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.829 kb on + strand, within CCNA_00051at 54.870 kb on + strand, within CCNA_00051at 54.878 kb on - strand, within CCNA_00051at 55.015 kb on - strand, within CCNA_00051at 55.035 kb on - strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.044 kb on + strand, within CCNA_00051at 55.045 kb on - strand, within CCNA_00051at 55.133 kb on + strandat 55.152 kb on + strandat 55.152 kb on + strandat 55.204 kb on - strandat 55.206 kb on - strandat 55.220 kb on - strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.224 kb on + strandat 55.227 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.232 kb on - strandat 55.234 kb on + strandat 55.253 kb on + strandat 55.260 kb on - strandat 55.270 kb on + strandat 55.669 kb on - strandat 55.679 kb on + strandat 55.696 kb on + strandat 55.720 kb on + strandat 55.736 kb on + strandat 55.744 kb on - strandat 55.768 kb on - strandat 55.824 kb on + strand, within CCNA_00053at 55.830 kb on + strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.838 kb on - strand, within CCNA_00053at 55.855 kb on - strand, within CCNA_00053at 55.862 kb on + strand, within CCNA_00053at 55.874 kb on - strand, within CCNA_00053at 55.882 kb on + strand, within CCNA_00053at 55.899 kb on - strand, within CCNA_00053at 55.946 kb on + strand, within CCNA_00053at 55.959 kb on - strand, within CCNA_00053at 55.964 kb on - strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.979 kb on + strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 55.987 kb on - strand, within CCNA_00053at 56.007 kb on - strand, within CCNA_00053at 56.025 kb on - strand, within CCNA_00053at 56.025 kb on - strand, within CCNA_00053at 56.049 kb on + strand, within CCNA_00053at 56.049 kb on + strand, within CCNA_00053at 56.050 kb on + strand, within CCNA_00053at 56.089 kb on - strand, within CCNA_00053at 56.089 kb on - strand, within CCNA_00053at 56.186 kb on + strand, within CCNA_00053at 56.209 kb on + strand, within CCNA_00053at 56.250 kb on - strand, within CCNA_00053at 56.270 kb on + strand, within CCNA_00053at 56.288 kb on - strand, within CCNA_00053at 56.299 kb on - strand, within CCNA_00053at 56.319 kb on - strand, within CCNA_00053at 56.327 kb on + strand, within CCNA_00053at 56.334 kb on - strand, within CCNA_00053at 56.357 kb on + strand, within CCNA_00053at 56.364 kb on + strand, within CCNA_00053at 56.372 kb on - strand, within CCNA_00053at 56.390 kb on - strand, within CCNA_00053at 56.405 kb on + strand, within CCNA_00053at 56.418 kb on - strand, within CCNA_00053at 56.432 kb on + strand, within CCNA_00053at 56.450 kb on - strand, within CCNA_00053at 56.474 kb on + strand, within CCNA_00053at 56.484 kb on - strand, within CCNA_00053at 56.491 kb on - strand, within CCNA_00053at 56.502 kb on + strand, within CCNA_00053at 56.533 kb on + strand, within CCNA_00053at 56.566 kb on + strand, within CCNA_00053at 56.566 kb on + strand, within CCNA_00053at 56.574 kb on - strandat 56.574 kb on - strandat 56.577 kb on + strandat 56.577 kb on + strandat 56.582 kb on + strandat 56.618 kb on + strandat 56.618 kb on + strandat 56.639 kb on - strandat 56.648 kb on + strandat 56.651 kb on - strandat 56.656 kb on - strandat 56.656 kb on - strandat 56.658 kb on - strandat 56.674 kb on + strandat 56.682 kb on - strandat 56.684 kb on + strandat 56.687 kb on - strandat 56.692 kb on - strandat 56.692 kb on - strandat 56.707 kb on + strandat 56.715 kb on - strandat 56.734 kb on + strandat 56.780 kb on + strandat 56.795 kb on - strandat 56.819 kb on - strand, within CCNA_00054at 56.860 kb on + strand, within CCNA_00054at 56.912 kb on - strand, within CCNA_00054at 56.912 kb on - strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.927 kb on + strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 56.935 kb on - strand, within CCNA_00054at 57.034 kb on + strand, within CCNA_00054at 57.041 kb on - strand, within CCNA_00054at 57.041 kb on - strand, within CCNA_00054at 57.069 kb on - strand, within CCNA_00054at 57.080 kb on + strand, within CCNA_00054at 57.138 kb on + strand, within CCNA_00054at 57.138 kb on + strand, within CCNA_00054at 57.146 kb on - strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.148 kb on + strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.156 kb on - strand, within CCNA_00054at 57.169 kb on + strand, within CCNA_00054at 57.169 kb on + strand, within CCNA_00054at 57.177 kb on - strand, within CCNA_00054at 57.177 kb on - strand, within CCNA_00054at 57.177 kb on - strand, within CCNA_00054at 57.194 kb on + strand, within CCNA_00054at 57.256 kb on + strand, within CCNA_00054at 57.307 kb on + strand, within CCNA_00054at 57.315 kb on - strand, within CCNA_00054at 57.320 kb on + strand, within CCNA_00054at 57.352 kb on + strand, within CCNA_00054at 57.352 kb on + strand, within CCNA_00054at 57.375 kb on - strand, within CCNA_00054at 57.387 kb on + strand, within CCNA_00054at 57.395 kb on - strand, within CCNA_00054at 57.412 kb on + strand, within CCNA_00054at 57.419 kb on - strand, within CCNA_00054at 57.419 kb on - strand, within CCNA_00054at 57.428 kb on + strand, within CCNA_00054at 57.428 kb on + strand, within CCNA_00054at 57.487 kb on + strand, within CCNA_00054at 57.492 kb on - strand, within CCNA_00054at 57.495 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.511 kb on - strand, within CCNA_00054at 57.531 kb on - strand, within CCNA_00054at 57.588 kb on - strand, within CCNA_00054at 57.623 kb on - strand, within CCNA_00054at 57.665 kb on + strand, within CCNA_00054

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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54,751 + CCNA_00051 0.49 -1.8
54,770 + CCNA_00051 0.51 -0.8
54,778 - CCNA_00051 0.52 -0.1
54,792 - CCNA_00051 0.54 +1.4
54,793 - CCNA_00051 0.54 -0.3
54,804 + CCNA_00051 0.55 -0.1
54,822 - CCNA_00051 0.57 -1.0
54,829 + CCNA_00051 0.57 -1.5
54,829 + CCNA_00051 0.57 -1.6
54,870 + CCNA_00051 0.62 +0.2
54,878 - CCNA_00051 0.63 -1.5
55,015 - CCNA_00051 0.78 +0.2
55,035 - CCNA_00051 0.80 +0.5
55,044 + CCNA_00051 0.81 +0.2
55,044 + CCNA_00051 0.81 -0.9
55,045 - CCNA_00051 0.81 -1.5
55,133 + -1.2
55,152 + -1.6
55,152 + +0.9
55,204 - +1.3
55,206 - +1.6
55,220 - +0.2
55,224 + -0.1
55,224 + -2.4
55,224 + +1.5
55,224 + -1.9
55,227 - +1.1
55,232 - +1.0
55,232 - +1.0
55,232 - -0.2
55,232 - +2.3
55,232 - +1.4
55,232 - -0.4
55,232 - +1.2
55,232 - -1.3
55,232 - +0.4
55,232 - +0.6
55,232 - +1.3
55,234 + -1.3
55,253 + -1.7
55,260 - +1.1
55,270 + -1.6
55,669 - +1.5
55,679 + +0.2
55,696 + -0.2
55,720 + -0.7
55,736 + +1.2
55,744 - +1.1
55,768 - +1.7
55,824 + CCNA_00053 0.11 -0.1
55,830 + CCNA_00053 0.11 +0.5
55,838 - CCNA_00053 0.12 +1.3
55,838 - CCNA_00053 0.12 +1.1
55,838 - CCNA_00053 0.12 +1.4
55,855 - CCNA_00053 0.14 +0.1
55,862 + CCNA_00053 0.15 -0.5
55,874 - CCNA_00053 0.16 +0.2
55,882 + CCNA_00053 0.17 +4.1
55,899 - CCNA_00053 0.19 +0.9
55,946 + CCNA_00053 0.23 +1.5
55,959 - CCNA_00053 0.25 +1.5
55,964 - CCNA_00053 0.25 -1.0
55,979 + CCNA_00053 0.27 -2.7
55,979 + CCNA_00053 0.27 -0.7
55,979 + CCNA_00053 0.27 -1.4
55,987 - CCNA_00053 0.28 +1.3
55,987 - CCNA_00053 0.28 +1.0
55,987 - CCNA_00053 0.28 +1.5
55,987 - CCNA_00053 0.28 +1.2
55,987 - CCNA_00053 0.28 +1.4
55,987 - CCNA_00053 0.28 +1.3
55,987 - CCNA_00053 0.28 +1.5
56,007 - CCNA_00053 0.30 +0.8
56,025 - CCNA_00053 0.32 +0.9
56,025 - CCNA_00053 0.32 +0.5
56,049 + CCNA_00053 0.34 -0.7
56,049 + CCNA_00053 0.34 +0.2
56,050 + CCNA_00053 0.34 -0.6
56,089 - CCNA_00053 0.39 +0.5
56,089 - CCNA_00053 0.39 +1.1
56,186 + CCNA_00053 0.49 +1.5
56,209 + CCNA_00053 0.51 -0.5
56,250 - CCNA_00053 0.56 +1.6
56,270 + CCNA_00053 0.58 -0.3
56,288 - CCNA_00053 0.60 +0.5
56,299 - CCNA_00053 0.61 +0.2
56,319 - CCNA_00053 0.63 +1.6
56,327 + CCNA_00053 0.64 -2.0
56,334 - CCNA_00053 0.65 +2.0
56,357 + CCNA_00053 0.67 -1.6
56,364 + CCNA_00053 0.68 -0.8
56,372 - CCNA_00053 0.69 +1.1
56,390 - CCNA_00053 0.70 +0.2
56,405 + CCNA_00053 0.72 -0.5
56,418 - CCNA_00053 0.73 +0.5
56,432 + CCNA_00053 0.75 -1.4
56,450 - CCNA_00053 0.77 +1.2
56,474 + CCNA_00053 0.79 +0.5
56,484 - CCNA_00053 0.80 +1.8
56,491 - CCNA_00053 0.81 +0.6
56,502 + CCNA_00053 0.82 +0.9
56,533 + CCNA_00053 0.86 +0.8
56,566 + CCNA_00053 0.89 -1.2
56,566 + CCNA_00053 0.89 -0.2
56,574 - +1.4
56,574 - +1.1
56,577 + -1.4
56,577 + -2.0
56,582 + -0.7
56,618 + -0.1
56,618 + +1.3
56,639 - +0.9
56,648 + +0.2
56,651 - +1.0
56,656 - +1.2
56,656 - +0.6
56,658 - +1.6
56,674 + -1.4
56,682 - -0.5
56,684 + -1.6
56,687 - +0.5
56,692 - -0.2
56,692 - +0.3
56,707 + +1.5
56,715 - -1.2
56,734 + -1.9
56,780 + +0.9
56,795 - -1.3
56,819 - CCNA_00054 0.11 -2.1
56,860 + CCNA_00054 0.14 +0.5
56,912 - CCNA_00054 0.18 -0.8
56,912 - CCNA_00054 0.18 +0.3
56,927 + CCNA_00054 0.19 -0.1
56,927 + CCNA_00054 0.19 +0.5
56,935 - CCNA_00054 0.20 -0.1
56,935 - CCNA_00054 0.20 +3.5
56,935 - CCNA_00054 0.20 -0.6
57,034 + CCNA_00054 0.27 -0.5
57,041 - CCNA_00054 0.28 -1.4
57,041 - CCNA_00054 0.28 +1.2
57,069 - CCNA_00054 0.30 +0.7
57,080 + CCNA_00054 0.31 +0.5
57,138 + CCNA_00054 0.35 +1.5
57,138 + CCNA_00054 0.35 +1.9
57,146 - CCNA_00054 0.36 -1.2
57,148 + CCNA_00054 0.36 +0.2
57,148 + CCNA_00054 0.36 +2.5
57,148 + CCNA_00054 0.36 +1.5
57,156 - CCNA_00054 0.36 +0.4
57,156 - CCNA_00054 0.36 -0.1
57,156 - CCNA_00054 0.36 +1.9
57,156 - CCNA_00054 0.36 +0.1
57,156 - CCNA_00054 0.36 -0.0
57,156 - CCNA_00054 0.36 -1.1
57,169 + CCNA_00054 0.37 +0.9
57,169 + CCNA_00054 0.37 -0.3
57,177 - CCNA_00054 0.38 -1.1
57,177 - CCNA_00054 0.38 -2.5
57,177 - CCNA_00054 0.38 +0.9
57,194 + CCNA_00054 0.39 +0.6
57,256 + CCNA_00054 0.44 +0.2
57,307 + CCNA_00054 0.48 -0.8
57,315 - CCNA_00054 0.48 +0.5
57,320 + CCNA_00054 0.49 -0.5
57,352 + CCNA_00054 0.51 +0.9
57,352 + CCNA_00054 0.51 +1.5
57,375 - CCNA_00054 0.53 -0.4
57,387 + CCNA_00054 0.54 +0.9
57,395 - CCNA_00054 0.54 +0.8
57,412 + CCNA_00054 0.55 -1.3
57,419 - CCNA_00054 0.56 +0.9
57,419 - CCNA_00054 0.56 +0.0
57,428 + CCNA_00054 0.57 +0.5
57,428 + CCNA_00054 0.57 -0.5
57,487 + CCNA_00054 0.61 -0.3
57,492 - CCNA_00054 0.61 -0.5
57,495 - CCNA_00054 0.62 -1.5
57,511 - CCNA_00054 0.63 +1.6
57,511 - CCNA_00054 0.63 -0.7
57,531 - CCNA_00054 0.64 +0.1
57,588 - CCNA_00054 0.69 +2.5
57,623 - CCNA_00054 0.71 +0.4
57,665 + CCNA_00054 0.74 +0.9

Or see this region's nucleotide sequence