Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00037

Experiment: PYE with nitrite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00035 and CCNA_00036 are separated by 2 nucleotidesCCNA_00036 and CCNA_00037 are separated by 100 nucleotidesCCNA_00037 and CCNA_00038 are separated by 59 nucleotidesCCNA_00038 and CCNA_00039 overlap by 1 nucleotides CCNA_00035: CCNA_00035 - tRNA pseudouridine synthase B, at 38,495 to 39,427 _00035 CCNA_00036: CCNA_00036 - ribosome-binding factor A, at 39,430 to 39,879 _00036 CCNA_00037: CCNA_00037 - esterase lipase family protein, at 39,980 to 40,768 _00037 CCNA_00038: CCNA_00038 - hypothetical protein, at 40,828 to 41,403 _00038 CCNA_00039: CCNA_00039 - hypothetical protein, at 41,403 to 41,921 _00039 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 39.016 kb on + strand, within CCNA_00035at 39.016 kb on + strand, within CCNA_00035at 39.024 kb on - strand, within CCNA_00035at 39.048 kb on + strand, within CCNA_00035at 39.120 kb on - strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.130 kb on + strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.138 kb on - strand, within CCNA_00035at 39.190 kb on - strand, within CCNA_00035at 39.236 kb on + strand, within CCNA_00035at 39.245 kb on - strand, within CCNA_00035at 39.268 kb on + strand, within CCNA_00035at 39.273 kb on + strand, within CCNA_00035at 39.281 kb on - strand, within CCNA_00035at 39.348 kb on + strandat 39.351 kb on - strandat 39.359 kb on + strandat 39.362 kb on - strandat 39.372 kb on - strandat 39.372 kb on - strandat 39.380 kb on - strandat 39.385 kb on - strandat 39.392 kb on + strandat 39.428 kb on + strandat 39.429 kb on - strandat 39.433 kb on + strandat 39.433 kb on + strandat 39.436 kb on - strandat 39.464 kb on - strandat 39.464 kb on - strandat 39.480 kb on + strand, within CCNA_00036at 39.483 kb on - strand, within CCNA_00036at 39.741 kb on - strand, within CCNA_00036at 39.883 kb on + strandat 39.950 kb on + strandat 39.956 kb on - strandat 39.956 kb on - strandat 39.978 kb on + strandat 39.978 kb on + strandat 39.986 kb on - strandat 39.986 kb on - strandat 39.993 kb on - strandat 40.027 kb on + strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.043 kb on + strandat 40.051 kb on - strandat 40.051 kb on - strandat 40.051 kb on - strandat 40.056 kb on - strandat 40.063 kb on + strand, within CCNA_00037at 40.070 kb on + strand, within CCNA_00037at 40.071 kb on - strand, within CCNA_00037at 40.075 kb on + strand, within CCNA_00037at 40.078 kb on - strand, within CCNA_00037at 40.078 kb on - strand, within CCNA_00037at 40.088 kb on - strand, within CCNA_00037at 40.134 kb on + strand, within CCNA_00037at 40.134 kb on - strand, within CCNA_00037at 40.141 kb on - strand, within CCNA_00037at 40.142 kb on - strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.158 kb on + strand, within CCNA_00037at 40.166 kb on - strandat 40.166 kb on - strand, within CCNA_00037at 40.168 kb on - strand, within CCNA_00037at 40.236 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.280 kb on + strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.288 kb on - strand, within CCNA_00037at 40.296 kb on + strand, within CCNA_00037at 40.338 kb on + strand, within CCNA_00037at 40.343 kb on + strand, within CCNA_00037at 40.363 kb on + strand, within CCNA_00037at 40.405 kb on - strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.422 kb on + strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.430 kb on - strand, within CCNA_00037at 40.435 kb on + strand, within CCNA_00037at 40.465 kb on + strand, within CCNA_00037at 40.473 kb on - strand, within CCNA_00037at 40.506 kb on + strand, within CCNA_00037at 40.514 kb on - strand, within CCNA_00037at 40.514 kb on - strand, within CCNA_00037at 40.576 kb on + strand, within CCNA_00037at 40.601 kb on - strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.625 kb on + strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strandat 40.633 kb on - strand, within CCNA_00037at 40.633 kb on - strand, within CCNA_00037at 40.646 kb on + strandat 40.678 kb on + strandat 40.678 kb on + strand, within CCNA_00037at 40.686 kb on - strand, within CCNA_00037at 40.745 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.795 kb on + strandat 40.796 kb on + strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.803 kb on - strandat 40.823 kb on - strandat 40.825 kb on + strandat 40.847 kb on - strandat 40.847 kb on - strandat 40.848 kb on - strandat 40.883 kb on + strandat 40.891 kb on - strand, within CCNA_00038at 40.927 kb on + strand, within CCNA_00038at 41.009 kb on + strand, within CCNA_00038at 41.009 kb on + strand, within CCNA_00038at 41.043 kb on + strand, within CCNA_00038at 41.062 kb on + strand, within CCNA_00038at 41.064 kb on + strand, within CCNA_00038at 41.069 kb on + strand, within CCNA_00038at 41.069 kb on + strand, within CCNA_00038at 41.072 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.077 kb on - strand, within CCNA_00038at 41.089 kb on + strand, within CCNA_00038at 41.107 kb on - strand, within CCNA_00038at 41.111 kb on + strand, within CCNA_00038at 41.254 kb on - strand, within CCNA_00038at 41.254 kb on - strand, within CCNA_00038at 41.256 kb on + strand, within CCNA_00038at 41.260 kb on + strand, within CCNA_00038at 41.260 kb on + strand, within CCNA_00038at 41.265 kb on + strand, within CCNA_00038at 41.265 kb on + strand, within CCNA_00038at 41.332 kb on - strand, within CCNA_00038at 41.336 kb on - strand, within CCNA_00038at 41.342 kb on - strand, within CCNA_00038at 41.344 kb on + strand, within CCNA_00038at 41.406 kb on - strandat 41.496 kb on - strand, within CCNA_00039at 41.506 kb on + strand, within CCNA_00039at 41.506 kb on + strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.514 kb on - strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.625 kb on + strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.633 kb on - strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.694 kb on + strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.702 kb on - strand, within CCNA_00039at 41.748 kb on - strand, within CCNA_00039

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM
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39,016 + CCNA_00035 0.56 +0.5
39,016 + CCNA_00035 0.56 -0.2
39,024 - CCNA_00035 0.57 +1.3
39,048 + CCNA_00035 0.59 +1.1
39,120 - CCNA_00035 0.67 +2.1
39,130 + CCNA_00035 0.68 -1.9
39,130 + CCNA_00035 0.68 -2.1
39,130 + CCNA_00035 0.68 -1.1
39,130 + CCNA_00035 0.68 +1.9
39,130 + CCNA_00035 0.68 -0.2
39,138 - CCNA_00035 0.69 -0.3
39,138 - CCNA_00035 0.69 +1.3
39,138 - CCNA_00035 0.69 +1.7
39,138 - CCNA_00035 0.69 +2.0
39,138 - CCNA_00035 0.69 +2.8
39,138 - CCNA_00035 0.69 +2.0
39,190 - CCNA_00035 0.74 +2.1
39,236 + CCNA_00035 0.79 -1.3
39,245 - CCNA_00035 0.80 +2.1
39,268 + CCNA_00035 0.83 +0.8
39,273 + CCNA_00035 0.83 +0.3
39,281 - CCNA_00035 0.84 +1.5
39,348 + -1.3
39,351 - +1.7
39,359 + +1.5
39,362 - +1.6
39,372 - +2.3
39,372 - +2.4
39,380 - +1.7
39,385 - +1.9
39,392 + -0.1
39,428 + -1.0
39,429 - +1.5
39,433 + +0.7
39,433 + -0.7
39,436 - +0.6
39,464 - +0.7
39,464 - +1.3
39,480 + CCNA_00036 0.11 +1.5
39,483 - CCNA_00036 0.12 +1.6
39,741 - CCNA_00036 0.69 +1.5
39,883 + +0.0
39,950 + +0.9
39,956 - +1.9
39,956 - +1.8
39,978 + -0.1
39,978 + -0.7
39,986 - +1.5
39,986 - -1.2
39,993 - -0.2
40,027 + -1.0
40,035 - -0.9
40,035 - -0.1
40,035 - -1.1
40,043 + -1.7
40,043 + -0.1
40,043 + -1.5
40,051 - +0.5
40,051 - -0.3
40,051 - -1.4
40,056 - -1.3
40,063 + CCNA_00037 0.11 -1.9
40,070 + CCNA_00037 0.11 -1.9
40,071 - CCNA_00037 0.12 -2.0
40,075 + CCNA_00037 0.12 +0.2
40,078 - CCNA_00037 0.12 -1.3
40,078 - CCNA_00037 0.12 -0.8
40,088 - CCNA_00037 0.14 -0.5
40,134 + CCNA_00037 0.20 +0.2
40,134 - CCNA_00037 0.20 -1.7
40,141 - CCNA_00037 0.20 -0.9
40,142 - CCNA_00037 0.21 -1.1
40,158 + CCNA_00037 0.23 -0.1
40,158 + CCNA_00037 0.23 -0.0
40,158 + CCNA_00037 0.23 -1.0
40,166 - +2.5
40,166 - CCNA_00037 0.24 -1.7
40,168 - CCNA_00037 0.24 -0.1
40,236 + CCNA_00037 0.32 -0.1
40,280 + CCNA_00037 0.38 -1.0
40,280 + CCNA_00037 0.38 -1.5
40,288 - CCNA_00037 0.39 +0.2
40,288 - CCNA_00037 0.39 -1.5
40,288 - CCNA_00037 0.39 -1.2
40,288 - CCNA_00037 0.39 -1.7
40,288 - CCNA_00037 0.39 +0.5
40,296 + CCNA_00037 0.40 +2.5
40,338 + CCNA_00037 0.45 +0.9
40,343 + CCNA_00037 0.46 -1.2
40,363 + CCNA_00037 0.49 -2.0
40,405 - CCNA_00037 0.54 -0.4
40,422 + CCNA_00037 0.56 -2.0
40,422 + CCNA_00037 0.56 +1.5
40,430 - CCNA_00037 0.57 -0.5
40,430 - CCNA_00037 0.57 -0.3
40,435 + CCNA_00037 0.58 -2.7
40,465 + CCNA_00037 0.61 +0.5
40,473 - CCNA_00037 0.62 +0.9
40,506 + CCNA_00037 0.67 +0.5
40,514 - CCNA_00037 0.68 +0.5
40,514 - CCNA_00037 0.68 +1.5
40,576 + CCNA_00037 0.76 +0.6
40,601 - CCNA_00037 0.79 -0.3
40,625 + CCNA_00037 0.82 -0.8
40,625 + CCNA_00037 0.82 -1.4
40,625 + CCNA_00037 0.82 -2.5
40,625 + CCNA_00037 0.82 -0.1
40,625 + CCNA_00037 0.82 +0.9
40,625 + CCNA_00037 0.82 -1.0
40,633 - CCNA_00037 0.83 -1.8
40,633 - CCNA_00037 0.83 -0.5
40,633 - CCNA_00037 0.83 +0.2
40,633 - CCNA_00037 0.83 +0.2
40,633 - +1.5
40,633 - CCNA_00037 0.83 -0.3
40,633 - CCNA_00037 0.83 -1.5
40,646 + +2.5
40,678 + +2.5
40,678 + CCNA_00037 0.88 +0.5
40,686 - CCNA_00037 0.89 -0.6
40,745 + -1.7
40,795 + -1.4
40,795 + +0.5
40,795 + -1.7
40,795 + +0.5
40,795 + +0.9
40,795 + -0.3
40,795 + +1.1
40,795 + +1.5
40,796 + +0.9
40,803 - -1.8
40,803 - -1.1
40,803 - -1.5
40,803 - -2.5
40,803 - +0.3
40,803 - -0.0
40,803 - -2.1
40,823 - +0.4
40,825 + -0.8
40,847 - -0.1
40,847 - -1.1
40,848 - -1.3
40,883 + -0.3
40,891 - CCNA_00038 0.11 -2.1
40,927 + CCNA_00038 0.17 +0.5
41,009 + CCNA_00038 0.31 -1.5
41,009 + CCNA_00038 0.31 -1.7
41,043 + CCNA_00038 0.37 -1.3
41,062 + CCNA_00038 0.41 -0.1
41,064 + CCNA_00038 0.41 -2.4
41,069 + CCNA_00038 0.42 -0.3
41,069 + CCNA_00038 0.42 -0.3
41,072 - CCNA_00038 0.42 -0.7
41,077 - CCNA_00038 0.43 +0.8
41,077 - CCNA_00038 0.43 -0.7
41,077 - CCNA_00038 0.43 -0.1
41,089 + CCNA_00038 0.45 +2.5
41,107 - CCNA_00038 0.48 -0.2
41,111 + CCNA_00038 0.49 +0.3
41,254 - CCNA_00038 0.74 +0.3
41,254 - CCNA_00038 0.74 -1.4
41,256 + CCNA_00038 0.74 +0.3
41,260 + CCNA_00038 0.75 -1.6
41,260 + CCNA_00038 0.75 -0.5
41,265 + CCNA_00038 0.76 -2.3
41,265 + CCNA_00038 0.76 -1.7
41,332 - CCNA_00038 0.88 +0.6
41,336 - CCNA_00038 0.88 +0.8
41,342 - CCNA_00038 0.89 -2.1
41,344 + CCNA_00038 0.90 -3.2
41,406 - -0.6
41,496 - CCNA_00039 0.18 -0.2
41,506 + CCNA_00039 0.20 +0.5
41,506 + CCNA_00039 0.20 +2.5
41,514 - CCNA_00039 0.21 +0.8
41,514 - CCNA_00039 0.21 -0.1
41,514 - CCNA_00039 0.21 -1.3
41,514 - CCNA_00039 0.21 -1.3
41,625 + CCNA_00039 0.43 -2.5
41,625 + CCNA_00039 0.43 -2.0
41,625 + CCNA_00039 0.43 -2.4
41,625 + CCNA_00039 0.43 -1.1
41,625 + CCNA_00039 0.43 -0.7
41,625 + CCNA_00039 0.43 +0.5
41,633 - CCNA_00039 0.44 -2.5
41,633 - CCNA_00039 0.44 -1.1
41,633 - CCNA_00039 0.44 +0.5
41,633 - CCNA_00039 0.44 -0.5
41,633 - CCNA_00039 0.44 +0.0
41,633 - CCNA_00039 0.44 +0.9
41,633 - CCNA_00039 0.44 -0.5
41,633 - CCNA_00039 0.44 +0.3
41,633 - CCNA_00039 0.44 +0.5
41,633 - CCNA_00039 0.44 -0.2
41,633 - CCNA_00039 0.44 -0.4
41,694 + CCNA_00039 0.56 +0.5
41,694 + CCNA_00039 0.56 -0.7
41,694 + CCNA_00039 0.56 -0.3
41,694 + CCNA_00039 0.56 -0.3
41,694 + CCNA_00039 0.56 -0.3
41,702 - CCNA_00039 0.58 +0.1
41,702 - CCNA_00039 0.58 +0.5
41,748 - CCNA_00039 0.66 -0.8

Or see this region's nucleotide sequence