Experiment: PYE with nitrite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00011 and CCNA_00012 are separated by 86 nucleotides CCNA_00012 and CCNA_00013 are separated by 20 nucleotides
CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380
_00011
CCNA_00012: CCNA_00012 - DNA mismatch repair protein MutS, at 11,467 to 14,178
_00012
CCNA_00013: CCNA_00013 - protein-PII uridylyltransferase, at 14,199 to 17,021
_00013
Position (kb) 11
12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 10.759 kb on - strand, within CCNA_00011 at 10.963 kb on + strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.057 kb on + strand, within CCNA_00011 at 11.096 kb on + strand, within CCNA_00011 at 11.155 kb on + strand, within CCNA_00011 at 11.184 kb on - strand, within CCNA_00011 at 11.190 kb on - strand, within CCNA_00011 at 11.247 kb on + strand, within CCNA_00011 at 11.273 kb on + strand at 11.317 kb on + strand at 11.317 kb on - strand at 11.325 kb on - strand at 11.344 kb on + strand at 11.361 kb on - strand at 11.366 kb on + strand at 11.372 kb on - strand at 11.382 kb on - strand at 11.383 kb on - strand at 11.446 kb on + strand at 11.497 kb on - strand at 11.646 kb on - strand at 11.716 kb on + strand at 11.751 kb on + strand, within CCNA_00012 at 11.775 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.807 kb on + strand, within CCNA_00012 at 11.813 kb on + strand, within CCNA_00012 at 11.815 kb on - strand, within CCNA_00012 at 11.934 kb on - strand, within CCNA_00012 at 11.955 kb on + strand, within CCNA_00012 at 11.967 kb on + strand, within CCNA_00012 at 11.976 kb on - strand, within CCNA_00012 at 11.991 kb on + strand, within CCNA_00012 at 11.999 kb on - strand, within CCNA_00012 at 12.002 kb on + strand, within CCNA_00012 at 12.024 kb on - strand, within CCNA_00012 at 12.027 kb on + strand, within CCNA_00012 at 12.029 kb on + strand, within CCNA_00012 at 12.035 kb on - strand, within CCNA_00012 at 12.081 kb on - strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.082 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.098 kb on + strand, within CCNA_00012 at 12.108 kb on + strand, within CCNA_00012 at 12.111 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.116 kb on - strand, within CCNA_00012 at 12.121 kb on + strand, within CCNA_00012 at 12.123 kb on - strand, within CCNA_00012 at 12.126 kb on + strand, within CCNA_00012 at 12.134 kb on - strand, within CCNA_00012 at 12.150 kb on - strand, within CCNA_00012 at 12.162 kb on + strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.170 kb on - strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.172 kb on + strand, within CCNA_00012 at 12.178 kb on + strand, within CCNA_00012 at 12.205 kb on - strand, within CCNA_00012 at 12.221 kb on + strand, within CCNA_00012 at 12.316 kb on - strand, within CCNA_00012 at 12.349 kb on - strand, within CCNA_00012 at 12.387 kb on - strand, within CCNA_00012 at 12.459 kb on + strand, within CCNA_00012 at 12.478 kb on + strand, within CCNA_00012 at 12.496 kb on + strand, within CCNA_00012 at 12.546 kb on + strand, within CCNA_00012 at 12.546 kb on + strand, within CCNA_00012 at 12.552 kb on - strand, within CCNA_00012 at 12.562 kb on - strand, within CCNA_00012 at 12.594 kb on + strand, within CCNA_00012 at 12.612 kb on - strand, within CCNA_00012 at 12.621 kb on - strand, within CCNA_00012 at 12.635 kb on + strand, within CCNA_00012 at 12.643 kb on - strand, within CCNA_00012 at 12.647 kb on + strand, within CCNA_00012 at 12.702 kb on + strand, within CCNA_00012 at 12.707 kb on + strand, within CCNA_00012 at 12.719 kb on + strand, within CCNA_00012 at 12.719 kb on + strand, within CCNA_00012 at 12.719 kb on + strand, within CCNA_00012 at 12.734 kb on + strand, within CCNA_00012 at 12.734 kb on + strand, within CCNA_00012 at 12.737 kb on - strand, within CCNA_00012 at 12.737 kb on - strand, within CCNA_00012 at 12.737 kb on - strand, within CCNA_00012 at 12.742 kb on - strand, within CCNA_00012 at 12.744 kb on + strand, within CCNA_00012 at 12.744 kb on + strand, within CCNA_00012 at 12.744 kb on + strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.752 kb on - strand, within CCNA_00012 at 12.773 kb on + strand, within CCNA_00012 at 12.781 kb on - strand, within CCNA_00012 at 12.791 kb on + strand, within CCNA_00012 at 12.855 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.861 kb on + strand, within CCNA_00012 at 12.869 kb on - strand, within CCNA_00012 at 12.869 kb on - strand, within CCNA_00012 at 12.869 kb on - strand, within CCNA_00012 at 12.892 kb on - strand, within CCNA_00012 at 12.951 kb on + strand, within CCNA_00012 at 12.959 kb on - strand, within CCNA_00012 at 13.004 kb on - strand, within CCNA_00012 at 13.031 kb on + strand, within CCNA_00012 at 13.041 kb on + strand, within CCNA_00012 at 13.043 kb on + strand, within CCNA_00012 at 13.051 kb on - strand, within CCNA_00012 at 13.076 kb on + strand, within CCNA_00012 at 13.133 kb on + strand, within CCNA_00012 at 13.133 kb on + strand, within CCNA_00012 at 13.133 kb on + strand, within CCNA_00012 at 13.141 kb on - strand, within CCNA_00012 at 13.168 kb on - strand, within CCNA_00012 at 13.168 kb on - strand, within CCNA_00012 at 13.170 kb on + strand, within CCNA_00012 at 13.178 kb on - strand, within CCNA_00012 at 13.210 kb on + strand, within CCNA_00012 at 13.210 kb on + strand, within CCNA_00012 at 13.218 kb on - strand, within CCNA_00012 at 13.218 kb on - strand, within CCNA_00012 at 13.232 kb on + strand, within CCNA_00012 at 13.232 kb on + strand, within CCNA_00012 at 13.270 kb on + strand, within CCNA_00012 at 13.282 kb on + strand, within CCNA_00012 at 13.283 kb on - strand, within CCNA_00012 at 13.299 kb on - strand, within CCNA_00012 at 13.313 kb on - strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.359 kb on + strand, within CCNA_00012 at 13.367 kb on - strand, within CCNA_00012 at 13.381 kb on + strand, within CCNA_00012 at 13.429 kb on + strand, within CCNA_00012 at 13.434 kb on + strand, within CCNA_00012 at 13.437 kb on - strand, within CCNA_00012 at 13.551 kb on - strand, within CCNA_00012 at 13.574 kb on + strand, within CCNA_00012 at 13.594 kb on + strand, within CCNA_00012 at 13.611 kb on + strand, within CCNA_00012 at 13.622 kb on + strand, within CCNA_00012 at 13.632 kb on + strand, within CCNA_00012 at 13.660 kb on - strand, within CCNA_00012 at 13.687 kb on + strand, within CCNA_00012 at 13.702 kb on - strand, within CCNA_00012 at 13.716 kb on + strand, within CCNA_00012 at 13.719 kb on - strand, within CCNA_00012 at 13.719 kb on - strand, within CCNA_00012 at 13.724 kb on - strand, within CCNA_00012 at 13.724 kb on - strand, within CCNA_00012 at 13.724 kb on - strand, within CCNA_00012 at 13.783 kb on - strand, within CCNA_00012 at 13.783 kb on - strand, within CCNA_00012 at 13.789 kb on + strand, within CCNA_00012 at 13.790 kb on + strand, within CCNA_00012 at 13.801 kb on + strand, within CCNA_00012 at 13.809 kb on - strand, within CCNA_00012 at 13.877 kb on + strand, within CCNA_00012 at 13.904 kb on + strand, within CCNA_00012 at 13.904 kb on + strand, within CCNA_00012 at 13.948 kb on - strand at 13.955 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.963 kb on + strand at 13.971 kb on - strand at 14.041 kb on - strand at 14.045 kb on - strand at 14.059 kb on - strand at 14.061 kb on + strand at 14.075 kb on - strand at 14.117 kb on + strand at 14.117 kb on + strand at 14.117 kb on + strand at 14.117 kb on + strand at 14.125 kb on - strand at 14.125 kb on - strand at 14.154 kb on + strand at 14.154 kb on + strand at 14.162 kb on - strand at 14.162 kb on - strand at 14.162 kb on - strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.166 kb on + strand at 14.174 kb on - strand at 14.174 kb on - strand at 14.181 kb on - strand at 14.181 kb on - strand at 14.185 kb on + strand at 14.211 kb on - strand at 14.242 kb on - strand at 14.253 kb on - strand at 14.261 kb on - strand at 14.261 kb on - strand at 14.264 kb on + strand at 14.397 kb on + strand at 14.422 kb on - strand at 14.456 kb on - strand at 14.507 kb on + strand, within CCNA_00013 at 14.545 kb on + strand, within CCNA_00013 at 14.545 kb on + strand, within CCNA_00013 at 14.547 kb on - strand, within CCNA_00013 at 14.587 kb on - strand, within CCNA_00013 at 14.771 kb on + strand, within CCNA_00013 at 14.850 kb on - strand, within CCNA_00013 at 14.899 kb on + strand, within CCNA_00013 at 14.906 kb on + strand, within CCNA_00013 at 14.984 kb on + strand, within CCNA_00013 at 15.033 kb on + strand, within CCNA_00013 at 15.083 kb on - strand, within CCNA_00013 at 15.108 kb on + strand, within CCNA_00013 at 15.110 kb on - strand, within CCNA_00013 at 15.116 kb on - strand, within CCNA_00013 at 15.123 kb on - strand, within CCNA_00013
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with nitrite 5 mM remove 10,759 - CCNA_00011 0.46 +1.1 10,963 + CCNA_00011 0.64 +1.3 11,012 + CCNA_00011 0.68 +1.4 11,057 + CCNA_00011 0.72 +1.7 11,096 + CCNA_00011 0.75 +1.3 11,155 + CCNA_00011 0.80 +1.3 11,184 - CCNA_00011 0.83 +1.1 11,190 - CCNA_00011 0.84 +2.9 11,247 + CCNA_00011 0.88 +2.1 11,273 + +1.2 11,317 + +3.2 11,317 - +0.5 11,325 - +1.1 11,344 + +3.2 11,361 - -0.4 11,366 + +3.8 11,372 - +0.8 11,382 - +0.5 11,383 - +0.5 11,446 + +3.5 11,497 - -1.2 11,646 - -2.3 11,716 + +0.6 11,751 + CCNA_00012 0.10 +1.0 11,775 + CCNA_00012 0.11 +2.1 11,807 + CCNA_00012 0.13 +2.6 11,807 + CCNA_00012 0.13 +1.3 11,813 + CCNA_00012 0.13 +0.8 11,815 - CCNA_00012 0.13 +0.2 11,934 - CCNA_00012 0.17 -0.1 11,955 + CCNA_00012 0.18 +1.4 11,967 + CCNA_00012 0.18 +2.1 11,976 - CCNA_00012 0.19 +0.2 11,991 + CCNA_00012 0.19 +0.5 11,999 - CCNA_00012 0.20 +0.5 12,002 + CCNA_00012 0.20 +0.3 12,024 - CCNA_00012 0.21 +3.5 12,027 + CCNA_00012 0.21 +0.9 12,029 + CCNA_00012 0.21 +0.8 12,035 - CCNA_00012 0.21 +1.9 12,081 - CCNA_00012 0.23 +1.1 12,082 + CCNA_00012 0.23 +1.6 12,082 + CCNA_00012 0.23 +0.7 12,098 + CCNA_00012 0.23 -1.9 12,098 + CCNA_00012 0.23 -0.0 12,098 + CCNA_00012 0.23 +1.4 12,108 + CCNA_00012 0.24 +2.9 12,111 - CCNA_00012 0.24 +0.9 12,116 - CCNA_00012 0.24 -0.0 12,116 - CCNA_00012 0.24 -0.9 12,116 - CCNA_00012 0.24 +3.3 12,116 - CCNA_00012 0.24 -0.8 12,121 + CCNA_00012 0.24 -0.4 12,123 - CCNA_00012 0.24 +1.0 12,126 + CCNA_00012 0.24 +0.9 12,134 - CCNA_00012 0.25 +0.3 12,150 - CCNA_00012 0.25 +0.9 12,162 + CCNA_00012 0.26 +1.2 12,170 - CCNA_00012 0.26 +1.6 12,170 - CCNA_00012 0.26 +1.2 12,172 + CCNA_00012 0.26 +3.0 12,172 + CCNA_00012 0.26 +2.5 12,178 + CCNA_00012 0.26 +1.2 12,205 - CCNA_00012 0.27 -1.4 12,221 + CCNA_00012 0.28 +1.3 12,316 - CCNA_00012 0.31 -2.0 12,349 - CCNA_00012 0.33 -0.4 12,387 - CCNA_00012 0.34 -0.1 12,459 + CCNA_00012 0.37 -0.1 12,478 + CCNA_00012 0.37 +1.1 12,496 + CCNA_00012 0.38 +1.0 12,546 + CCNA_00012 0.40 +1.1 12,546 + CCNA_00012 0.40 +1.3 12,552 - CCNA_00012 0.40 -0.4 12,562 - CCNA_00012 0.40 -0.6 12,594 + CCNA_00012 0.42 +2.1 12,612 - CCNA_00012 0.42 -2.0 12,621 - CCNA_00012 0.43 +0.2 12,635 + CCNA_00012 0.43 +0.4 12,643 - CCNA_00012 0.43 +3.5 12,647 + CCNA_00012 0.44 +0.9 12,702 + CCNA_00012 0.46 +2.4 12,707 + CCNA_00012 0.46 -0.3 12,719 + CCNA_00012 0.46 +0.9 12,719 + CCNA_00012 0.46 +1.1 12,719 + CCNA_00012 0.46 +0.8 12,734 + CCNA_00012 0.47 +2.5 12,734 + CCNA_00012 0.47 +1.0 12,737 - CCNA_00012 0.47 -0.5 12,737 - CCNA_00012 0.47 +3.5 12,737 - CCNA_00012 0.47 -1.5 12,742 - CCNA_00012 0.47 +1.5 12,744 + CCNA_00012 0.47 +0.3 12,744 + CCNA_00012 0.47 +0.2 12,744 + CCNA_00012 0.47 +0.9 12,752 - CCNA_00012 0.47 -1.5 12,752 - CCNA_00012 0.47 -1.1 12,752 - CCNA_00012 0.47 -0.5 12,752 - CCNA_00012 0.47 +0.4 12,773 + CCNA_00012 0.48 -0.8 12,781 - CCNA_00012 0.48 +0.9 12,791 + CCNA_00012 0.49 +0.2 12,855 + CCNA_00012 0.51 -0.3 12,861 + CCNA_00012 0.51 +1.1 12,861 + CCNA_00012 0.51 +0.2 12,861 + CCNA_00012 0.51 +0.7 12,861 + CCNA_00012 0.51 -0.3 12,861 + CCNA_00012 0.51 +1.0 12,861 + CCNA_00012 0.51 -0.0 12,869 - CCNA_00012 0.52 +0.5 12,869 - CCNA_00012 0.52 -0.7 12,869 - CCNA_00012 0.52 -0.7 12,892 - CCNA_00012 0.53 +0.7 12,951 + CCNA_00012 0.55 +0.4 12,959 - CCNA_00012 0.55 +2.1 13,004 - CCNA_00012 0.57 -1.7 13,031 + CCNA_00012 0.58 +1.5 13,041 + CCNA_00012 0.58 +1.1 13,043 + CCNA_00012 0.58 -0.4 13,051 - CCNA_00012 0.58 -0.1 13,076 + CCNA_00012 0.59 +1.3 13,133 + CCNA_00012 0.61 +1.1 13,133 + CCNA_00012 0.61 +1.8 13,133 + CCNA_00012 0.61 +1.8 13,141 - CCNA_00012 0.62 -0.8 13,168 - CCNA_00012 0.63 -1.2 13,168 - CCNA_00012 0.63 -1.2 13,170 + CCNA_00012 0.63 +2.6 13,178 - CCNA_00012 0.63 -1.3 13,210 + CCNA_00012 0.64 +1.1 13,210 + CCNA_00012 0.64 +0.2 13,218 - CCNA_00012 0.65 -1.3 13,218 - CCNA_00012 0.65 +0.0 13,232 + CCNA_00012 0.65 +1.6 13,232 + CCNA_00012 0.65 +0.8 13,270 + CCNA_00012 0.66 +1.0 13,282 + CCNA_00012 0.67 +1.1 13,283 - CCNA_00012 0.67 +0.9 13,299 - CCNA_00012 0.68 +1.3 13,313 - CCNA_00012 0.68 -1.9 13,359 + CCNA_00012 0.70 +0.6 13,359 + CCNA_00012 0.70 +2.2 13,359 + CCNA_00012 0.70 -0.6 13,359 + CCNA_00012 0.70 +1.2 13,367 - CCNA_00012 0.70 +0.7 13,381 + CCNA_00012 0.71 +1.9 13,429 + CCNA_00012 0.72 +1.5 13,434 + CCNA_00012 0.73 +0.4 13,437 - CCNA_00012 0.73 -1.6 13,551 - CCNA_00012 0.77 +0.4 13,574 + CCNA_00012 0.78 +0.5 13,594 + CCNA_00012 0.78 -0.2 13,611 + CCNA_00012 0.79 +0.3 13,622 + CCNA_00012 0.79 +1.3 13,632 + CCNA_00012 0.80 +0.6 13,660 - CCNA_00012 0.81 -1.3 13,687 + CCNA_00012 0.82 +1.0 13,702 - CCNA_00012 0.82 -0.2 13,716 + CCNA_00012 0.83 +1.6 13,719 - CCNA_00012 0.83 -1.2 13,719 - CCNA_00012 0.83 +0.1 13,724 - CCNA_00012 0.83 -1.9 13,724 - CCNA_00012 0.83 -1.0 13,724 - CCNA_00012 0.83 +0.4 13,783 - CCNA_00012 0.85 -0.5 13,783 - CCNA_00012 0.85 -0.2 13,789 + CCNA_00012 0.86 +1.6 13,790 + CCNA_00012 0.86 +1.3 13,801 + CCNA_00012 0.86 +0.2 13,809 - CCNA_00012 0.86 -1.6 13,877 + CCNA_00012 0.89 +0.2 13,904 + CCNA_00012 0.90 +2.2 13,904 + CCNA_00012 0.90 -0.1 13,948 - -0.4 13,955 + +0.1 13,963 + +0.5 13,963 + +1.0 13,963 + +1.2 13,963 + +0.5 13,963 + +0.8 13,971 - +0.4 14,041 - +0.8 14,045 - +1.5 14,059 - +2.5 14,061 + +0.6 14,075 - -0.4 14,117 + +0.8 14,117 + +1.0 14,117 + +1.5 14,117 + -0.0 14,125 - -1.7 14,125 - -1.3 14,154 + +0.6 14,154 + -0.5 14,162 - -0.5 14,162 - -0.4 14,162 - -0.4 14,166 + +0.6 14,166 + +0.2 14,166 + +0.3 14,166 + +0.5 14,166 + -0.4 14,166 + +5.1 14,174 - -1.0 14,174 - +0.2 14,181 - -2.0 14,181 - +0.9 14,185 + -0.4 14,211 - +2.3 14,242 - -3.1 14,253 - +2.7 14,261 - -0.8 14,261 - +0.5 14,264 + -1.0 14,397 + +2.3 14,422 - +3.5 14,456 - +3.4 14,507 + CCNA_00013 0.11 +2.7 14,545 + CCNA_00013 0.12 +3.5 14,545 + CCNA_00013 0.12 +3.9 14,547 - CCNA_00013 0.12 +4.1 14,587 - CCNA_00013 0.14 +3.2 14,771 + CCNA_00013 0.20 +2.8 14,850 - CCNA_00013 0.23 +2.1 14,899 + CCNA_00013 0.25 +2.8 14,906 + CCNA_00013 0.25 +1.9 14,984 + CCNA_00013 0.28 +2.9 15,033 + CCNA_00013 0.30 +3.6 15,083 - CCNA_00013 0.31 +1.1 15,108 + CCNA_00013 0.32 +2.8 15,110 - CCNA_00013 0.32 +2.2 15,116 - CCNA_00013 0.32 +3.0 15,123 - CCNA_00013 0.33 +2.3
Or see this region's nucleotide sequence