Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS25230

Experiment: Lactitol 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS25225 and CA265_RS25230 are separated by 87 nucleotidesCA265_RS25230 and CA265_RS25235 are separated by 173 nucleotides CA265_RS25225: CA265_RS25225 - single-stranded-DNA-specific exonuclease RecJ, at 6,139,503 to 6,141,203 _RS25225 CA265_RS25230: CA265_RS25230 - LPS export ABC transporter ATP-binding protein, at 6,141,291 to 6,142,031 _RS25230 CA265_RS25235: CA265_RS25235 - hypothetical protein, at 6,142,205 to 6,143,722 _RS25235 Position (kb) 6141 6142 6143Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 6141.290 kb on + strandat 6142.032 kb on + strandat 6142.038 kb on - strandat 6142.153 kb on + strandat 6142.156 kb on - strandat 6142.309 kb on + strandat 6142.417 kb on + strand, within CA265_RS25235at 6142.430 kb on + strand, within CA265_RS25235at 6142.462 kb on + strand, within CA265_RS25235at 6142.519 kb on + strand, within CA265_RS25235at 6142.520 kb on - strand, within CA265_RS25235at 6142.586 kb on - strand, within CA265_RS25235at 6142.599 kb on - strand, within CA265_RS25235at 6142.670 kb on - strand, within CA265_RS25235at 6142.745 kb on + strand, within CA265_RS25235at 6142.748 kb on + strand, within CA265_RS25235at 6142.873 kb on - strand, within CA265_RS25235at 6142.944 kb on - strand, within CA265_RS25235at 6142.946 kb on - strand, within CA265_RS25235at 6143.016 kb on - strand, within CA265_RS25235at 6143.016 kb on - strand, within CA265_RS25235at 6143.031 kb on - strand, within CA265_RS25235

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol 10mM (C)
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6,141,290 + -0.0
6,142,032 + +0.4
6,142,038 - -3.8
6,142,153 + +2.0
6,142,156 - +0.3
6,142,309 + -0.4
6,142,417 + CA265_RS25235 0.14 -1.0
6,142,430 + CA265_RS25235 0.15 -1.5
6,142,462 + CA265_RS25235 0.17 -1.5
6,142,519 + CA265_RS25235 0.21 -4.8
6,142,520 - CA265_RS25235 0.21 -3.1
6,142,586 - CA265_RS25235 0.25 +0.4
6,142,599 - CA265_RS25235 0.26 -1.4
6,142,670 - CA265_RS25235 0.31 -0.5
6,142,745 + CA265_RS25235 0.36 -0.2
6,142,748 + CA265_RS25235 0.36 +1.4
6,142,873 - CA265_RS25235 0.44 -0.9
6,142,944 - CA265_RS25235 0.49 +0.1
6,142,946 - CA265_RS25235 0.49 -2.1
6,143,016 - CA265_RS25235 0.53 -2.1
6,143,016 - CA265_RS25235 0.53 -0.1
6,143,031 - CA265_RS25235 0.54 +0.3

Or see this region's nucleotide sequence