Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20990 and CA265_RS20995 are separated by 7 nucleotides CA265_RS20995 and CA265_RS21000 are separated by 44 nucleotides CA265_RS21000 and CA265_RS21005 are separated by 27 nucleotides
CA265_RS20990: CA265_RS20990 - sugar transporter, at 5,172,013 to 5,172,462
_RS20990
CA265_RS20995: CA265_RS20995 - biotin--[acetyl-CoA-carboxylase] ligase, at 5,172,470 to 5,173,246
_RS20995
CA265_RS21000: CA265_RS21000 - ribosome silencing factor, at 5,173,291 to 5,173,665
_RS21000
CA265_RS21005: CA265_RS21005 - peptidase M41, at 5,173,693 to 5,175,708
_RS21005
Position (kb) 5173
5174 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 5172.320 kb on - strand, within CA265_RS20990 at 5172.322 kb on - strand, within CA265_RS20990 at 5172.472 kb on - strand at 5173.220 kb on + strand at 5173.262 kb on + strand at 5173.307 kb on + strand at 5173.320 kb on + strand at 5173.352 kb on + strand, within CA265_RS21000 at 5173.374 kb on + strand, within CA265_RS21000 at 5173.374 kb on + strand, within CA265_RS21000 at 5173.425 kb on + strand, within CA265_RS21000 at 5173.478 kb on + strand, within CA265_RS21000 at 5173.479 kb on - strand, within CA265_RS21000 at 5173.490 kb on + strand, within CA265_RS21000 at 5173.493 kb on - strand at 5173.494 kb on + strand, within CA265_RS21000 at 5173.552 kb on - strand, within CA265_RS21000 at 5173.616 kb on + strand, within CA265_RS21000 at 5173.668 kb on + strand at 5173.670 kb on + strand at 5173.670 kb on + strand at 5174.224 kb on - strand, within CA265_RS21005 at 5174.562 kb on - strand, within CA265_RS21005
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 5,172,320 - CA265_RS20990 0.68 +1.8 5,172,322 - CA265_RS20990 0.69 -0.1 5,172,472 - +2.1 5,173,220 + +0.4 5,173,262 + +4.8 5,173,307 + +0.6 5,173,320 + -0.4 5,173,352 + CA265_RS21000 0.16 +1.3 5,173,374 + CA265_RS21000 0.22 -0.3 5,173,374 + CA265_RS21000 0.22 -0.3 5,173,425 + CA265_RS21000 0.36 +0.6 5,173,478 + CA265_RS21000 0.50 +0.9 5,173,479 - CA265_RS21000 0.50 -0.8 5,173,490 + CA265_RS21000 0.53 +2.1 5,173,493 - -1.5 5,173,494 + CA265_RS21000 0.54 +0.9 5,173,552 - CA265_RS21000 0.70 -0.8 5,173,616 + CA265_RS21000 0.87 +0.6 5,173,668 + +1.0 5,173,670 + +1.2 5,173,670 + +0.9 5,174,224 - CA265_RS21005 0.26 -0.6 5,174,562 - CA265_RS21005 0.43 +0.6
Or see this region's nucleotide sequence