Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20605 and CA265_RS20610 overlap by 83 nucleotides CA265_RS20610 and CA265_RS20615 are separated by 71 nucleotides CA265_RS20615 and CA265_RS20620 overlap by 7 nucleotides CA265_RS20620 and CA265_RS20625 are separated by 80 nucleotides
CA265_RS20605: CA265_RS20605 - hypothetical protein, at 5,098,354 to 5,099,613
_RS20605
CA265_RS20610: CA265_RS20610 - hypothetical protein, at 5,099,531 to 5,100,010
_RS20610
CA265_RS20615: CA265_RS20615 - hypothetical protein, at 5,100,082 to 5,102,697
_RS20615
CA265_RS20620: CA265_RS20620 - hypothetical protein, at 5,102,691 to 5,103,338
_RS20620
CA265_RS20625: CA265_RS20625 - hypothetical protein, at 5,103,419 to 5,104,144
_RS20625
Position (kb) 5100
5101
5102
5103 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5099.091 kb on + strand, within CA265_RS20605 at 5099.095 kb on + strand, within CA265_RS20605 at 5099.095 kb on + strand, within CA265_RS20605 at 5099.095 kb on + strand, within CA265_RS20605 at 5099.096 kb on - strand, within CA265_RS20605 at 5099.121 kb on + strand, within CA265_RS20605 at 5099.163 kb on - strand, within CA265_RS20605 at 5099.196 kb on + strand, within CA265_RS20605 at 5099.201 kb on - strand, within CA265_RS20605 at 5099.282 kb on + strand, within CA265_RS20605 at 5099.283 kb on - strand, within CA265_RS20605 at 5099.283 kb on - strand, within CA265_RS20605 at 5099.286 kb on + strand, within CA265_RS20605 at 5099.286 kb on + strand, within CA265_RS20605 at 5099.301 kb on + strand, within CA265_RS20605 at 5099.311 kb on - strand, within CA265_RS20605 at 5099.318 kb on + strand, within CA265_RS20605 at 5099.319 kb on - strand, within CA265_RS20605 at 5099.319 kb on - strand, within CA265_RS20605 at 5099.352 kb on + strand, within CA265_RS20605 at 5099.386 kb on + strand, within CA265_RS20605 at 5099.386 kb on + strand, within CA265_RS20605 at 5099.387 kb on - strand, within CA265_RS20605 at 5099.387 kb on - strand, within CA265_RS20605 at 5099.387 kb on - strand, within CA265_RS20605 at 5099.388 kb on + strand, within CA265_RS20605 at 5099.434 kb on + strand, within CA265_RS20605 at 5099.521 kb on + strand at 5099.566 kb on + strand at 5099.567 kb on - strand at 5099.600 kb on + strand at 5099.650 kb on + strand, within CA265_RS20610 at 5099.651 kb on - strand, within CA265_RS20610 at 5099.764 kb on + strand, within CA265_RS20610 at 5099.764 kb on + strand, within CA265_RS20610 at 5099.886 kb on + strand, within CA265_RS20610 at 5099.930 kb on - strand, within CA265_RS20610 at 5100.129 kb on - strand at 5100.174 kb on + strand at 5100.175 kb on - strand at 5100.195 kb on + strand at 5100.213 kb on + strand at 5100.295 kb on + strand at 5100.296 kb on - strand at 5100.342 kb on + strand at 5100.419 kb on - strand, within CA265_RS20615 at 5100.435 kb on + strand, within CA265_RS20615 at 5100.442 kb on + strand, within CA265_RS20615 at 5100.498 kb on + strand, within CA265_RS20615 at 5100.498 kb on + strand, within CA265_RS20615 at 5100.501 kb on - strand, within CA265_RS20615 at 5100.562 kb on - strand, within CA265_RS20615 at 5100.562 kb on - strand, within CA265_RS20615 at 5100.589 kb on - strand, within CA265_RS20615 at 5100.683 kb on + strand, within CA265_RS20615 at 5100.754 kb on - strand, within CA265_RS20615 at 5100.754 kb on - strand, within CA265_RS20615 at 5100.754 kb on - strand, within CA265_RS20615 at 5100.757 kb on + strand, within CA265_RS20615 at 5100.758 kb on - strand, within CA265_RS20615 at 5100.788 kb on - strand, within CA265_RS20615 at 5100.941 kb on + strand, within CA265_RS20615 at 5100.941 kb on + strand, within CA265_RS20615 at 5100.941 kb on + strand, within CA265_RS20615 at 5100.942 kb on - strand, within CA265_RS20615 at 5101.045 kb on + strand, within CA265_RS20615 at 5101.046 kb on - strand, within CA265_RS20615 at 5101.060 kb on - strand, within CA265_RS20615 at 5101.061 kb on + strand, within CA265_RS20615 at 5101.062 kb on - strand, within CA265_RS20615 at 5101.096 kb on - strand, within CA265_RS20615 at 5101.174 kb on - strand, within CA265_RS20615 at 5101.176 kb on + strand, within CA265_RS20615 at 5101.177 kb on - strand, within CA265_RS20615 at 5101.183 kb on - strand, within CA265_RS20615 at 5101.247 kb on - strand, within CA265_RS20615 at 5101.263 kb on + strand, within CA265_RS20615 at 5101.263 kb on + strand, within CA265_RS20615 at 5101.264 kb on - strand, within CA265_RS20615 at 5101.287 kb on + strand, within CA265_RS20615 at 5101.288 kb on - strand, within CA265_RS20615 at 5101.288 kb on - strand, within CA265_RS20615 at 5101.304 kb on - strand, within CA265_RS20615 at 5101.330 kb on + strand, within CA265_RS20615 at 5101.336 kb on + strand, within CA265_RS20615 at 5101.336 kb on + strand, within CA265_RS20615 at 5101.336 kb on + strand, within CA265_RS20615 at 5101.343 kb on - strand, within CA265_RS20615 at 5101.393 kb on + strand, within CA265_RS20615 at 5101.393 kb on + strand, within CA265_RS20615 at 5101.394 kb on - strand, within CA265_RS20615 at 5101.420 kb on + strand, within CA265_RS20615 at 5101.430 kb on - strand, within CA265_RS20615 at 5101.454 kb on - strand, within CA265_RS20615 at 5101.455 kb on + strand, within CA265_RS20615 at 5101.455 kb on + strand, within CA265_RS20615 at 5101.498 kb on - strand, within CA265_RS20615 at 5101.499 kb on + strand, within CA265_RS20615 at 5101.499 kb on + strand, within CA265_RS20615 at 5101.506 kb on + strand, within CA265_RS20615 at 5101.584 kb on + strand, within CA265_RS20615 at 5101.602 kb on + strand, within CA265_RS20615 at 5101.603 kb on - strand, within CA265_RS20615 at 5101.603 kb on - strand, within CA265_RS20615 at 5101.604 kb on + strand, within CA265_RS20615 at 5101.604 kb on + strand, within CA265_RS20615 at 5101.604 kb on + strand, within CA265_RS20615 at 5101.605 kb on - strand, within CA265_RS20615 at 5101.671 kb on + strand, within CA265_RS20615 at 5101.671 kb on + strand, within CA265_RS20615 at 5101.672 kb on - strand, within CA265_RS20615 at 5101.833 kb on + strand, within CA265_RS20615 at 5101.925 kb on - strand, within CA265_RS20615 at 5101.965 kb on + strand, within CA265_RS20615 at 5101.966 kb on - strand, within CA265_RS20615 at 5101.974 kb on + strand, within CA265_RS20615 at 5101.975 kb on + strand, within CA265_RS20615 at 5101.981 kb on + strand, within CA265_RS20615 at 5101.981 kb on + strand, within CA265_RS20615 at 5101.986 kb on + strand, within CA265_RS20615 at 5101.993 kb on - strand, within CA265_RS20615 at 5102.008 kb on - strand, within CA265_RS20615 at 5102.050 kb on - strand, within CA265_RS20615 at 5102.089 kb on - strand, within CA265_RS20615 at 5102.127 kb on + strand, within CA265_RS20615 at 5102.148 kb on + strand, within CA265_RS20615 at 5102.148 kb on + strand, within CA265_RS20615 at 5102.236 kb on - strand, within CA265_RS20615 at 5102.256 kb on + strand, within CA265_RS20615 at 5102.314 kb on - strand, within CA265_RS20615 at 5102.318 kb on - strand, within CA265_RS20615 at 5102.332 kb on - strand, within CA265_RS20615 at 5102.363 kb on - strand, within CA265_RS20615 at 5102.368 kb on + strand, within CA265_RS20615 at 5102.418 kb on + strand, within CA265_RS20615 at 5102.460 kb on - strand at 5102.463 kb on + strand at 5102.463 kb on + strand at 5102.463 kb on + strand at 5102.464 kb on - strand at 5102.526 kb on - strand at 5102.553 kb on + strand at 5102.553 kb on + strand at 5102.554 kb on - strand at 5102.572 kb on - strand at 5102.646 kb on + strand at 5102.657 kb on - strand at 5102.657 kb on - strand at 5102.657 kb on - strand at 5102.679 kb on + strand at 5102.683 kb on + strand at 5102.684 kb on - strand at 5102.813 kb on - strand, within CA265_RS20620 at 5102.882 kb on + strand, within CA265_RS20620 at 5102.968 kb on + strand, within CA265_RS20620 at 5102.968 kb on + strand, within CA265_RS20620 at 5102.969 kb on - strand, within CA265_RS20620 at 5102.969 kb on - strand, within CA265_RS20620 at 5102.969 kb on - strand, within CA265_RS20620 at 5102.973 kb on + strand, within CA265_RS20620 at 5102.978 kb on + strand, within CA265_RS20620 at 5102.979 kb on - strand, within CA265_RS20620 at 5102.981 kb on + strand, within CA265_RS20620 at 5103.053 kb on - strand, within CA265_RS20620 at 5103.090 kb on - strand, within CA265_RS20620 at 5103.092 kb on - strand, within CA265_RS20620 at 5103.192 kb on + strand, within CA265_RS20620 at 5103.193 kb on - strand, within CA265_RS20620 at 5103.193 kb on - strand, within CA265_RS20620 at 5103.224 kb on + strand, within CA265_RS20620 at 5103.224 kb on + strand, within CA265_RS20620 at 5103.224 kb on + strand, within CA265_RS20620 at 5103.263 kb on + strand, within CA265_RS20620 at 5103.264 kb on - strand, within CA265_RS20620 at 5103.264 kb on - strand, within CA265_RS20620 at 5103.266 kb on - strand, within CA265_RS20620 at 5103.304 kb on - strand at 5103.350 kb on + strand at 5103.470 kb on + strand at 5103.471 kb on - strand at 5103.473 kb on + strand at 5103.493 kb on + strand, within CA265_RS20625 at 5103.494 kb on - strand, within CA265_RS20625 at 5103.497 kb on - strand, within CA265_RS20625 at 5103.529 kb on + strand, within CA265_RS20625 at 5103.529 kb on + strand, within CA265_RS20625 at 5103.547 kb on + strand, within CA265_RS20625 at 5103.547 kb on + strand, within CA265_RS20625 at 5103.547 kb on + strand, within CA265_RS20625 at 5103.550 kb on - strand, within CA265_RS20625 at 5103.565 kb on + strand, within CA265_RS20625 at 5103.565 kb on + strand, within CA265_RS20625 at 5103.591 kb on - strand, within CA265_RS20625 at 5103.607 kb on + strand, within CA265_RS20625 at 5103.609 kb on - strand, within CA265_RS20625 at 5103.627 kb on - strand, within CA265_RS20625 at 5103.632 kb on - strand, within CA265_RS20625 at 5103.652 kb on + strand, within CA265_RS20625 at 5103.653 kb on - strand, within CA265_RS20625 at 5103.655 kb on - strand, within CA265_RS20625 at 5103.659 kb on + strand, within CA265_RS20625
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 5,099,091 + CA265_RS20605 0.58 -0.9 5,099,095 + CA265_RS20605 0.59 +2.6 5,099,095 + CA265_RS20605 0.59 +0.8 5,099,095 + CA265_RS20605 0.59 -0.4 5,099,096 - CA265_RS20605 0.59 -1.9 5,099,121 + CA265_RS20605 0.61 +0.3 5,099,163 - CA265_RS20605 0.64 -2.1 5,099,196 + CA265_RS20605 0.67 -2.2 5,099,201 - CA265_RS20605 0.67 +0.2 5,099,282 + CA265_RS20605 0.74 -0.0 5,099,283 - CA265_RS20605 0.74 -1.4 5,099,283 - CA265_RS20605 0.74 -1.4 5,099,286 + CA265_RS20605 0.74 -0.5 5,099,286 + CA265_RS20605 0.74 -2.3 5,099,301 + CA265_RS20605 0.75 -0.1 5,099,311 - CA265_RS20605 0.76 -3.0 5,099,318 + CA265_RS20605 0.77 +0.6 5,099,319 - CA265_RS20605 0.77 -0.6 5,099,319 - CA265_RS20605 0.77 -0.8 5,099,352 + CA265_RS20605 0.79 -0.5 5,099,386 + CA265_RS20605 0.82 +0.1 5,099,386 + CA265_RS20605 0.82 -0.2 5,099,387 - CA265_RS20605 0.82 -0.3 5,099,387 - CA265_RS20605 0.82 -0.8 5,099,387 - CA265_RS20605 0.82 -2.0 5,099,388 + CA265_RS20605 0.82 +0.0 5,099,434 + CA265_RS20605 0.86 -1.5 5,099,521 + -0.8 5,099,566 + +0.4 5,099,567 - -2.5 5,099,600 + +0.9 5,099,650 + CA265_RS20610 0.25 -2.2 5,099,651 - CA265_RS20610 0.25 -1.2 5,099,764 + CA265_RS20610 0.49 +0.7 5,099,764 + CA265_RS20610 0.49 -1.9 5,099,886 + CA265_RS20610 0.74 +1.0 5,099,930 - CA265_RS20610 0.83 -0.1 5,100,129 - -2.2 5,100,174 + -1.7 5,100,175 - -2.8 5,100,195 + -0.8 5,100,213 + +0.0 5,100,295 + +0.3 5,100,296 - +0.3 5,100,342 + +1.5 5,100,419 - CA265_RS20615 0.13 -3.6 5,100,435 + CA265_RS20615 0.13 -0.5 5,100,442 + CA265_RS20615 0.14 +0.0 5,100,498 + CA265_RS20615 0.16 +0.9 5,100,498 + CA265_RS20615 0.16 -1.2 5,100,501 - CA265_RS20615 0.16 -0.7 5,100,562 - CA265_RS20615 0.18 -2.4 5,100,562 - CA265_RS20615 0.18 -2.2 5,100,589 - CA265_RS20615 0.19 -0.6 5,100,683 + CA265_RS20615 0.23 -0.4 5,100,754 - CA265_RS20615 0.26 -0.8 5,100,754 - CA265_RS20615 0.26 -0.9 5,100,754 - CA265_RS20615 0.26 +1.2 5,100,757 + CA265_RS20615 0.26 +0.6 5,100,758 - CA265_RS20615 0.26 +1.1 5,100,788 - CA265_RS20615 0.27 -1.1 5,100,941 + CA265_RS20615 0.33 -2.8 5,100,941 + CA265_RS20615 0.33 +0.0 5,100,941 + CA265_RS20615 0.33 +0.8 5,100,942 - CA265_RS20615 0.33 -2.4 5,101,045 + CA265_RS20615 0.37 -0.1 5,101,046 - CA265_RS20615 0.37 -1.2 5,101,060 - CA265_RS20615 0.37 -2.4 5,101,061 + CA265_RS20615 0.37 +1.0 5,101,062 - CA265_RS20615 0.37 -1.4 5,101,096 - CA265_RS20615 0.39 -1.1 5,101,174 - CA265_RS20615 0.42 -2.8 5,101,176 + CA265_RS20615 0.42 -1.3 5,101,177 - CA265_RS20615 0.42 -0.1 5,101,183 - CA265_RS20615 0.42 -0.6 5,101,247 - CA265_RS20615 0.45 -3.6 5,101,263 + CA265_RS20615 0.45 -1.2 5,101,263 + CA265_RS20615 0.45 -0.1 5,101,264 - CA265_RS20615 0.45 +1.9 5,101,287 + CA265_RS20615 0.46 -0.5 5,101,288 - CA265_RS20615 0.46 -2.4 5,101,288 - CA265_RS20615 0.46 -0.1 5,101,304 - CA265_RS20615 0.47 +0.3 5,101,330 + CA265_RS20615 0.48 +0.0 5,101,336 + CA265_RS20615 0.48 -3.0 5,101,336 + CA265_RS20615 0.48 -1.8 5,101,336 + CA265_RS20615 0.48 -0.2 5,101,343 - CA265_RS20615 0.48 -1.2 5,101,393 + CA265_RS20615 0.50 -1.5 5,101,393 + CA265_RS20615 0.50 -0.6 5,101,394 - CA265_RS20615 0.50 +0.1 5,101,420 + CA265_RS20615 0.51 +1.9 5,101,430 - CA265_RS20615 0.52 +0.3 5,101,454 - CA265_RS20615 0.52 +0.9 5,101,455 + CA265_RS20615 0.52 +0.5 5,101,455 + CA265_RS20615 0.52 -0.3 5,101,498 - CA265_RS20615 0.54 -1.2 5,101,499 + CA265_RS20615 0.54 +0.0 5,101,499 + CA265_RS20615 0.54 +1.3 5,101,506 + CA265_RS20615 0.54 -0.0 5,101,584 + CA265_RS20615 0.57 +0.2 5,101,602 + CA265_RS20615 0.58 -0.1 5,101,603 - CA265_RS20615 0.58 -1.3 5,101,603 - CA265_RS20615 0.58 -0.6 5,101,604 + CA265_RS20615 0.58 -0.5 5,101,604 + CA265_RS20615 0.58 -0.3 5,101,604 + CA265_RS20615 0.58 -0.4 5,101,605 - CA265_RS20615 0.58 -1.1 5,101,671 + CA265_RS20615 0.61 +1.4 5,101,671 + CA265_RS20615 0.61 +1.4 5,101,672 - CA265_RS20615 0.61 +0.2 5,101,833 + CA265_RS20615 0.67 +0.3 5,101,925 - CA265_RS20615 0.70 +1.2 5,101,965 + CA265_RS20615 0.72 -1.0 5,101,966 - CA265_RS20615 0.72 -0.1 5,101,974 + CA265_RS20615 0.72 -1.0 5,101,975 + CA265_RS20615 0.72 +0.8 5,101,981 + CA265_RS20615 0.73 -0.1 5,101,981 + CA265_RS20615 0.73 +0.4 5,101,986 + CA265_RS20615 0.73 +0.0 5,101,993 - CA265_RS20615 0.73 -2.8 5,102,008 - CA265_RS20615 0.74 +0.2 5,102,050 - CA265_RS20615 0.75 -0.0 5,102,089 - CA265_RS20615 0.77 -2.9 5,102,127 + CA265_RS20615 0.78 +0.8 5,102,148 + CA265_RS20615 0.79 +0.4 5,102,148 + CA265_RS20615 0.79 -0.1 5,102,236 - CA265_RS20615 0.82 +0.3 5,102,256 + CA265_RS20615 0.83 -0.2 5,102,314 - CA265_RS20615 0.85 -1.2 5,102,318 - CA265_RS20615 0.85 -2.1 5,102,332 - CA265_RS20615 0.86 +0.2 5,102,363 - CA265_RS20615 0.87 -1.5 5,102,368 + CA265_RS20615 0.87 -0.2 5,102,418 + CA265_RS20615 0.89 -1.4 5,102,460 - -1.1 5,102,463 + -0.2 5,102,463 + +0.0 5,102,463 + -0.3 5,102,464 - +0.1 5,102,526 - -0.5 5,102,553 + -0.7 5,102,553 + +1.3 5,102,554 - -0.3 5,102,572 - -1.1 5,102,646 + -1.1 5,102,657 - -0.2 5,102,657 - -0.4 5,102,657 - -0.1 5,102,679 + +0.2 5,102,683 + -0.3 5,102,684 - -0.8 5,102,813 - CA265_RS20620 0.19 +1.7 5,102,882 + CA265_RS20620 0.29 -0.6 5,102,968 + CA265_RS20620 0.43 -0.7 5,102,968 + CA265_RS20620 0.43 +1.8 5,102,969 - CA265_RS20620 0.43 -0.8 5,102,969 - CA265_RS20620 0.43 -0.4 5,102,969 - CA265_RS20620 0.43 +0.2 5,102,973 + CA265_RS20620 0.44 +1.8 5,102,978 + CA265_RS20620 0.44 -1.2 5,102,979 - CA265_RS20620 0.44 -2.8 5,102,981 + CA265_RS20620 0.45 -0.5 5,103,053 - CA265_RS20620 0.56 +0.3 5,103,090 - CA265_RS20620 0.62 -3.5 5,103,092 - CA265_RS20620 0.62 +0.3 5,103,192 + CA265_RS20620 0.77 -2.0 5,103,193 - CA265_RS20620 0.77 -0.7 5,103,193 - CA265_RS20620 0.77 -0.6 5,103,224 + CA265_RS20620 0.82 +0.4 5,103,224 + CA265_RS20620 0.82 +0.2 5,103,224 + CA265_RS20620 0.82 +0.3 5,103,263 + CA265_RS20620 0.88 +2.2 5,103,264 - CA265_RS20620 0.88 -0.7 5,103,264 - CA265_RS20620 0.88 +0.6 5,103,266 - CA265_RS20620 0.89 -0.5 5,103,304 - -3.3 5,103,350 + +1.1 5,103,470 + -1.0 5,103,471 - -0.7 5,103,473 + +0.2 5,103,493 + CA265_RS20625 0.10 -0.9 5,103,494 - CA265_RS20625 0.10 -0.8 5,103,497 - CA265_RS20625 0.11 -1.0 5,103,529 + CA265_RS20625 0.15 +2.2 5,103,529 + CA265_RS20625 0.15 +2.2 5,103,547 + CA265_RS20625 0.18 -0.4 5,103,547 + CA265_RS20625 0.18 -0.0 5,103,547 + CA265_RS20625 0.18 -0.7 5,103,550 - CA265_RS20625 0.18 -2.0 5,103,565 + CA265_RS20625 0.20 +1.1 5,103,565 + CA265_RS20625 0.20 -0.7 5,103,591 - CA265_RS20625 0.24 -2.1 5,103,607 + CA265_RS20625 0.26 +0.8 5,103,609 - CA265_RS20625 0.26 -0.6 5,103,627 - CA265_RS20625 0.29 -1.9 5,103,632 - CA265_RS20625 0.29 -0.3 5,103,652 + CA265_RS20625 0.32 -3.0 5,103,653 - CA265_RS20625 0.32 -1.0 5,103,655 - CA265_RS20625 0.33 -2.4 5,103,659 + CA265_RS20625 0.33 +0.1
Or see this region's nucleotide sequence