Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS13245

Experiment: Lactitol 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS13235 and CA265_RS13240 are separated by 209 nucleotidesCA265_RS13240 and CA265_RS13245 are separated by 63 nucleotidesCA265_RS13245 and CA265_RS13250 are separated by 2 nucleotides CA265_RS13235: CA265_RS13235 - hypothetical protein, at 3,289,721 to 3,290,578 _RS13235 CA265_RS13240: CA265_RS13240 - preprotein translocase subunit YajC, at 3,290,788 to 3,291,108 _RS13240 CA265_RS13245: CA265_RS13245 - hypothetical protein, at 3,291,172 to 3,291,630 _RS13245 CA265_RS13250: CA265_RS13250 - transcription antitermination factor NusB, at 3,291,633 to 3,292,583 _RS13250 Position (kb) 3291 3292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3290.172 kb on - strand, within CA265_RS13235at 3290.265 kb on - strand, within CA265_RS13235at 3290.345 kb on - strand, within CA265_RS13235at 3290.345 kb on - strand, within CA265_RS13235at 3290.465 kb on + strand, within CA265_RS13235at 3290.466 kb on - strand, within CA265_RS13235at 3290.471 kb on + strand, within CA265_RS13235at 3290.477 kb on + strand, within CA265_RS13235at 3290.522 kb on - strandat 3290.558 kb on - strandat 3290.560 kb on - strandat 3290.624 kb on - strandat 3290.702 kb on - strandat 3290.733 kb on - strandat 3290.786 kb on + strandat 3290.787 kb on - strandat 3291.025 kb on + strand, within CA265_RS13240at 3291.055 kb on - strand, within CA265_RS13240at 3291.070 kb on - strand, within CA265_RS13240at 3291.092 kb on - strandat 3291.113 kb on + strandat 3291.114 kb on - strandat 3291.117 kb on + strandat 3291.196 kb on + strandat 3291.252 kb on + strand, within CA265_RS13245at 3291.252 kb on + strand, within CA265_RS13245at 3291.252 kb on + strand, within CA265_RS13245at 3291.253 kb on - strand, within CA265_RS13245at 3291.271 kb on - strand, within CA265_RS13245at 3291.290 kb on - strand, within CA265_RS13245at 3291.294 kb on + strand, within CA265_RS13245at 3291.294 kb on + strand, within CA265_RS13245at 3291.349 kb on - strand, within CA265_RS13245at 3291.394 kb on - strand, within CA265_RS13245at 3291.442 kb on + strand, within CA265_RS13245at 3291.508 kb on - strand, within CA265_RS13245at 3291.522 kb on + strand, within CA265_RS13245at 3291.568 kb on - strand, within CA265_RS13245at 3291.634 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactitol 10mM (C)
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3,290,172 - CA265_RS13235 0.53 +2.0
3,290,265 - CA265_RS13235 0.63 +0.2
3,290,345 - CA265_RS13235 0.73 +0.7
3,290,345 - CA265_RS13235 0.73 -0.6
3,290,465 + CA265_RS13235 0.87 -0.4
3,290,466 - CA265_RS13235 0.87 +0.3
3,290,471 + CA265_RS13235 0.87 -1.9
3,290,477 + CA265_RS13235 0.88 -0.3
3,290,522 - -2.9
3,290,558 - +0.6
3,290,560 - -2.3
3,290,624 - +0.3
3,290,702 - -0.6
3,290,733 - -1.1
3,290,786 + -1.7
3,290,787 - +0.7
3,291,025 + CA265_RS13240 0.74 +0.5
3,291,055 - CA265_RS13240 0.83 +0.9
3,291,070 - CA265_RS13240 0.88 +1.7
3,291,092 - -0.8
3,291,113 + -0.1
3,291,114 - +0.4
3,291,117 + -1.3
3,291,196 + +2.7
3,291,252 + CA265_RS13245 0.17 +1.1
3,291,252 + CA265_RS13245 0.17 +1.7
3,291,252 + CA265_RS13245 0.17 +0.3
3,291,253 - CA265_RS13245 0.18 +1.8
3,291,271 - CA265_RS13245 0.22 -0.2
3,291,290 - CA265_RS13245 0.26 -0.0
3,291,294 + CA265_RS13245 0.27 +0.4
3,291,294 + CA265_RS13245 0.27 +1.0
3,291,349 - CA265_RS13245 0.39 +1.7
3,291,394 - CA265_RS13245 0.48 +0.3
3,291,442 + CA265_RS13245 0.59 -0.0
3,291,508 - CA265_RS13245 0.73 +0.4
3,291,522 + CA265_RS13245 0.76 +2.0
3,291,568 - CA265_RS13245 0.86 -1.9
3,291,634 + +0.3

Or see this region's nucleotide sequence