Experiment: Lactitol 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00715 and CA265_RS00720 are separated by 86 nucleotides CA265_RS00720 and CA265_RS00725 are separated by 41 nucleotides
CA265_RS00715: CA265_RS00715 - hypothetical protein, at 165,640 to 168,699
_RS00715
CA265_RS00720: CA265_RS00720 - hypothetical protein, at 168,786 to 170,468
_RS00720
CA265_RS00725: CA265_RS00725 - hypothetical protein, at 170,510 to 173,620
_RS00725
Position (kb) 168
169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.889 kb on - strand, within CA265_RS00715 at 167.889 kb on - strand, within CA265_RS00715 at 167.938 kb on - strand, within CA265_RS00715 at 167.938 kb on - strand, within CA265_RS00715 at 167.941 kb on - strand, within CA265_RS00715 at 167.957 kb on - strand, within CA265_RS00715 at 167.960 kb on - strand, within CA265_RS00715 at 167.960 kb on - strand, within CA265_RS00715 at 168.163 kb on + strand, within CA265_RS00715 at 168.164 kb on - strand, within CA265_RS00715 at 168.241 kb on + strand, within CA265_RS00715 at 168.248 kb on + strand, within CA265_RS00715 at 168.261 kb on + strand, within CA265_RS00715 at 168.261 kb on + strand, within CA265_RS00715 at 168.265 kb on + strand, within CA265_RS00715 at 168.294 kb on - strand, within CA265_RS00715 at 168.313 kb on + strand, within CA265_RS00715 at 168.319 kb on + strand, within CA265_RS00715 at 168.320 kb on - strand, within CA265_RS00715 at 168.438 kb on + strand at 168.500 kb on + strand at 168.521 kb on + strand at 168.522 kb on - strand at 168.528 kb on + strand at 168.528 kb on + strand at 168.529 kb on - strand at 168.552 kb on + strand at 168.617 kb on - strand at 168.618 kb on + strand at 168.627 kb on - strand at 168.712 kb on - strand at 168.778 kb on - strand at 168.827 kb on + strand at 168.851 kb on + strand at 168.862 kb on + strand at 168.894 kb on - strand at 168.897 kb on + strand at 168.897 kb on + strand at 168.897 kb on + strand at 168.898 kb on - strand at 168.898 kb on - strand at 168.929 kb on - strand at 168.958 kb on - strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.983 kb on + strand, within CA265_RS00720 at 168.988 kb on - strand, within CA265_RS00720 at 169.004 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.029 kb on - strand, within CA265_RS00720 at 169.094 kb on - strand, within CA265_RS00720 at 169.113 kb on - strand, within CA265_RS00720 at 169.142 kb on - strand, within CA265_RS00720 at 169.154 kb on + strand, within CA265_RS00720 at 169.220 kb on + strand, within CA265_RS00720 at 169.221 kb on - strand, within CA265_RS00720 at 169.302 kb on - strand, within CA265_RS00720 at 169.470 kb on + strand, within CA265_RS00720 at 169.471 kb on - strand, within CA265_RS00720 at 169.547 kb on - strand, within CA265_RS00720 at 169.583 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.682 kb on + strand, within CA265_RS00720 at 169.683 kb on - strand, within CA265_RS00720 at 169.689 kb on - strand, within CA265_RS00720 at 169.789 kb on - strand, within CA265_RS00720 at 169.789 kb on - strand, within CA265_RS00720 at 169.790 kb on + strand, within CA265_RS00720 at 169.790 kb on + strand, within CA265_RS00720 at 169.806 kb on + strand, within CA265_RS00720 at 169.873 kb on + strand, within CA265_RS00720 at 169.885 kb on - strand, within CA265_RS00720 at 169.918 kb on + strand, within CA265_RS00720 at 169.944 kb on + strand, within CA265_RS00720 at 169.944 kb on + strand, within CA265_RS00720 at 170.025 kb on + strand, within CA265_RS00720 at 170.265 kb on - strand, within CA265_RS00720 at 170.266 kb on + strand, within CA265_RS00720 at 170.266 kb on + strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.267 kb on - strand, within CA265_RS00720 at 170.276 kb on + strand, within CA265_RS00720 at 170.352 kb on + strand at 170.353 kb on - strand at 170.401 kb on - strand at 170.401 kb on - strand at 170.503 kb on - strand at 170.503 kb on - strand at 170.510 kb on - strand at 170.523 kb on + strand at 170.532 kb on + strand at 170.532 kb on + strand at 170.584 kb on + strand at 170.585 kb on - strand at 170.596 kb on - strand at 170.626 kb on + strand at 170.646 kb on + strand at 170.719 kb on + strand at 170.725 kb on + strand at 170.726 kb on - strand at 170.778 kb on + strand at 170.778 kb on + strand at 170.790 kb on + strand at 170.800 kb on + strand at 170.927 kb on - strand, within CA265_RS00725 at 171.019 kb on + strand, within CA265_RS00725 at 171.023 kb on + strand, within CA265_RS00725 at 171.024 kb on - strand, within CA265_RS00725 at 171.024 kb on - strand, within CA265_RS00725 at 171.034 kb on + strand, within CA265_RS00725 at 171.046 kb on - strand, within CA265_RS00725 at 171.075 kb on - strand, within CA265_RS00725 at 171.075 kb on - strand, within CA265_RS00725 at 171.075 kb on - strand, within CA265_RS00725 at 171.160 kb on + strand, within CA265_RS00725 at 171.193 kb on + strand, within CA265_RS00725 at 171.340 kb on + strand, within CA265_RS00725 at 171.341 kb on - strand, within CA265_RS00725 at 171.445 kb on + strand, within CA265_RS00725 at 171.452 kb on - strand, within CA265_RS00725 at 171.452 kb on - strand, within CA265_RS00725 at 171.452 kb on - strand, within CA265_RS00725
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol 10mM (C) remove 167,889 - CA265_RS00715 0.73 +0.1 167,889 - CA265_RS00715 0.73 +0.1 167,938 - CA265_RS00715 0.75 +0.5 167,938 - CA265_RS00715 0.75 +0.8 167,941 - CA265_RS00715 0.75 +1.3 167,957 - CA265_RS00715 0.76 -0.5 167,960 - CA265_RS00715 0.76 -1.1 167,960 - CA265_RS00715 0.76 -0.2 168,163 + CA265_RS00715 0.82 +0.7 168,164 - CA265_RS00715 0.82 -0.1 168,241 + CA265_RS00715 0.85 +0.5 168,248 + CA265_RS00715 0.85 +0.8 168,261 + CA265_RS00715 0.86 +0.1 168,261 + CA265_RS00715 0.86 +0.7 168,265 + CA265_RS00715 0.86 -1.2 168,294 - CA265_RS00715 0.87 +1.5 168,313 + CA265_RS00715 0.87 +1.0 168,319 + CA265_RS00715 0.88 -1.4 168,320 - CA265_RS00715 0.88 +0.5 168,438 + +0.4 168,500 + +0.5 168,521 + +1.2 168,522 - +0.9 168,528 + -0.2 168,528 + +2.2 168,529 - -0.6 168,552 + +0.7 168,617 - +0.9 168,618 + -1.1 168,627 - +1.1 168,712 - +0.4 168,778 - +1.1 168,827 + +1.0 168,851 + +0.7 168,862 + +1.8 168,894 - -0.6 168,897 + -0.1 168,897 + +0.0 168,897 + +0.8 168,898 - -0.3 168,898 - -1.7 168,929 - +1.5 168,958 - CA265_RS00720 0.10 -0.5 168,983 + CA265_RS00720 0.12 +0.3 168,983 + CA265_RS00720 0.12 -1.7 168,983 + CA265_RS00720 0.12 -0.0 168,983 + CA265_RS00720 0.12 -0.4 168,988 - CA265_RS00720 0.12 -0.1 169,004 - CA265_RS00720 0.13 -0.0 169,029 - CA265_RS00720 0.14 -1.2 169,029 - CA265_RS00720 0.14 -0.9 169,029 - CA265_RS00720 0.14 -0.3 169,094 - CA265_RS00720 0.18 +0.8 169,113 - CA265_RS00720 0.19 -0.2 169,142 - CA265_RS00720 0.21 +0.1 169,154 + CA265_RS00720 0.22 -0.9 169,220 + CA265_RS00720 0.26 +2.1 169,221 - CA265_RS00720 0.26 -1.3 169,302 - CA265_RS00720 0.31 +0.3 169,470 + CA265_RS00720 0.41 -2.1 169,471 - CA265_RS00720 0.41 -1.0 169,547 - CA265_RS00720 0.45 +1.4 169,583 + CA265_RS00720 0.47 +1.8 169,682 + CA265_RS00720 0.53 +0.3 169,682 + CA265_RS00720 0.53 -0.6 169,683 - CA265_RS00720 0.53 +0.7 169,689 - CA265_RS00720 0.54 -0.1 169,789 - CA265_RS00720 0.60 -0.2 169,789 - CA265_RS00720 0.60 -0.5 169,790 + CA265_RS00720 0.60 +1.0 169,790 + CA265_RS00720 0.60 +0.4 169,806 + CA265_RS00720 0.61 +3.2 169,873 + CA265_RS00720 0.65 +0.4 169,885 - CA265_RS00720 0.65 +2.8 169,918 + CA265_RS00720 0.67 -1.2 169,944 + CA265_RS00720 0.69 +0.4 169,944 + CA265_RS00720 0.69 +1.0 170,025 + CA265_RS00720 0.74 -0.9 170,265 - CA265_RS00720 0.88 +1.2 170,266 + CA265_RS00720 0.88 +0.8 170,266 + CA265_RS00720 0.88 +1.4 170,267 - CA265_RS00720 0.88 -0.3 170,267 - CA265_RS00720 0.88 -0.1 170,267 - CA265_RS00720 0.88 +1.9 170,267 - CA265_RS00720 0.88 +1.3 170,276 + CA265_RS00720 0.89 +0.4 170,352 + +2.2 170,353 - +1.2 170,401 - -0.5 170,401 - -0.2 170,503 - +0.3 170,503 - +0.9 170,510 - -1.4 170,523 + +0.3 170,532 + -2.4 170,532 + -0.7 170,584 + -0.4 170,585 - -1.4 170,596 - +0.2 170,626 + -0.8 170,646 + -0.2 170,719 + -0.8 170,725 + -2.7 170,726 - +2.0 170,778 + +0.8 170,778 + -0.4 170,790 + +0.2 170,800 + +1.5 170,927 - CA265_RS00725 0.13 +0.2 171,019 + CA265_RS00725 0.16 -1.3 171,023 + CA265_RS00725 0.16 -0.7 171,024 - CA265_RS00725 0.17 -0.4 171,024 - CA265_RS00725 0.17 -0.3 171,034 + CA265_RS00725 0.17 -0.4 171,046 - CA265_RS00725 0.17 -0.8 171,075 - CA265_RS00725 0.18 +0.2 171,075 - CA265_RS00725 0.18 +2.8 171,075 - CA265_RS00725 0.18 -0.8 171,160 + CA265_RS00725 0.21 +1.6 171,193 + CA265_RS00725 0.22 -3.3 171,340 + CA265_RS00725 0.27 -2.6 171,341 - CA265_RS00725 0.27 +1.1 171,445 + CA265_RS00725 0.30 +0.8 171,452 - CA265_RS00725 0.30 -0.5 171,452 - CA265_RS00725 0.30 +1.0 171,452 - CA265_RS00725 0.30 +1.3
Or see this region's nucleotide sequence