Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22290 and ABZR87_RS22295 are separated by 428 nucleotides ABZR87_RS22295 and ABZR87_RS22300 are separated by 122 nucleotides ABZR87_RS22300 and ABZR87_RS22305 are separated by 127 nucleotides
ABZR87_RS22290: ABZR87_RS22290 - flagellar basal body rod protein FlgB, at 1,360,671 to 1,361,126
_RS22290
ABZR87_RS22295: ABZR87_RS22295 - flagellar basal body P-ring formation chaperone FlgA, at 1,361,555 to 1,362,433
_RS22295
ABZR87_RS22300: ABZR87_RS22300 - flagellar biosynthesis anti-sigma factor FlgM, at 1,362,556 to 1,362,876
_RS22300
ABZR87_RS22305: ABZR87_RS22305 - flagella synthesis protein FlgN, at 1,363,004 to 1,363,465
_RS22305
Position (kb) 1361
1362
1363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1360.616 kb on + strand at 1360.616 kb on + strand at 1360.617 kb on - strand at 1360.617 kb on - strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.660 kb on + strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.661 kb on - strand at 1360.672 kb on + strand at 1360.673 kb on - strand at 1360.673 kb on - strand at 1360.673 kb on - strand at 1360.738 kb on + strand, within ABZR87_RS22290 at 1360.738 kb on + strand, within ABZR87_RS22290 at 1360.826 kb on - strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.014 kb on + strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.015 kb on - strand, within ABZR87_RS22290 at 1361.157 kb on + strand at 1361.158 kb on - strand at 1361.158 kb on - strand at 1361.208 kb on + strand at 1361.208 kb on + strand at 1361.351 kb on + strand at 1361.351 kb on + strand at 1361.352 kb on - strand at 1361.372 kb on + strand at 1361.373 kb on - strand at 1361.436 kb on + strand at 1361.436 kb on + strand at 1361.468 kb on + strand at 1361.468 kb on + strand at 1361.468 kb on + strand at 1361.469 kb on - strand at 1361.520 kb on + strand at 1361.520 kb on + strand at 1361.521 kb on - strand at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.985 kb on + strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1361.986 kb on - strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.062 kb on + strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.063 kb on - strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.065 kb on + strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.066 kb on - strand, within ABZR87_RS22295 at 1362.107 kb on - strand, within ABZR87_RS22295 at 1362.192 kb on + strand, within ABZR87_RS22295 at 1362.192 kb on + strand, within ABZR87_RS22295 at 1362.192 kb on + strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.193 kb on - strand, within ABZR87_RS22295 at 1362.432 kb on - strand at 1362.432 kb on - strand at 1362.432 kb on - strand at 1362.464 kb on + strand at 1362.464 kb on + strand at 1362.483 kb on + strand at 1362.484 kb on - strand at 1362.484 kb on - strand at 1362.484 kb on - strand at 1362.493 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.527 kb on + strand at 1362.528 kb on - strand at 1362.528 kb on - strand at 1362.528 kb on - strand at 1362.528 kb on - strand at 1362.570 kb on + strand at 1362.570 kb on + strand at 1362.570 kb on + strand at 1362.570 kb on + strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.571 kb on - strand at 1362.582 kb on + strand at 1362.582 kb on + strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.583 kb on - strand at 1362.654 kb on + strand, within ABZR87_RS22300 at 1362.905 kb on - strand at 1362.905 kb on - strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.996 kb on + strand at 1362.997 kb on - strand at 1362.997 kb on - strand at 1362.997 kb on - strand at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.235 kb on + strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.236 kb on - strand, within ABZR87_RS22305 at 1363.407 kb on - strand, within ABZR87_RS22305 at 1363.407 kb on - strand, within ABZR87_RS22305
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 1,360,616 + +3.4 1,360,616 + +1.9 1,360,617 - +0.2 1,360,617 - -3.5 1,360,660 + +2.3 1,360,660 + +2.9 1,360,660 + +2.4 1,360,660 + +3.2 1,360,660 + +3.0 1,360,661 - -0.2 1,360,661 - +0.6 1,360,661 - -0.8 1,360,661 - +0.7 1,360,661 - +0.7 1,360,672 + +2.0 1,360,673 - +0.0 1,360,673 - +0.6 1,360,673 - -0.5 1,360,738 + ABZR87_RS22290 0.15 +2.6 1,360,738 + ABZR87_RS22290 0.15 +1.3 1,360,826 - ABZR87_RS22290 0.34 +1.9 1,361,014 + ABZR87_RS22290 0.75 +3.5 1,361,014 + ABZR87_RS22290 0.75 +2.8 1,361,014 + ABZR87_RS22290 0.75 +1.3 1,361,014 + ABZR87_RS22290 0.75 +1.6 1,361,015 - ABZR87_RS22290 0.75 +2.1 1,361,015 - ABZR87_RS22290 0.75 +2.2 1,361,015 - ABZR87_RS22290 0.75 +2.2 1,361,015 - ABZR87_RS22290 0.75 +2.3 1,361,157 + +2.5 1,361,158 - -2.3 1,361,158 - -0.5 1,361,208 + +2.0 1,361,208 + +1.4 1,361,351 + +2.6 1,361,351 + +2.3 1,361,352 - -0.2 1,361,372 + +2.6 1,361,373 - +1.4 1,361,436 + +2.8 1,361,436 + +1.3 1,361,468 + +2.2 1,361,468 + +1.7 1,361,468 + +2.3 1,361,469 - +2.2 1,361,520 + +0.7 1,361,520 + -0.4 1,361,521 - +0.0 1,361,985 + ABZR87_RS22295 0.49 +2.0 1,361,985 + ABZR87_RS22295 0.49 +1.4 1,361,985 + ABZR87_RS22295 0.49 +2.2 1,361,985 + ABZR87_RS22295 0.49 +3.0 1,361,985 + ABZR87_RS22295 0.49 +0.9 1,361,985 + ABZR87_RS22295 0.49 +1.9 1,361,985 + ABZR87_RS22295 0.49 +1.8 1,361,985 + ABZR87_RS22295 0.49 +2.2 1,361,985 + ABZR87_RS22295 0.49 +2.1 1,361,985 + ABZR87_RS22295 0.49 +1.9 1,361,985 + ABZR87_RS22295 0.49 +2.1 1,361,985 + ABZR87_RS22295 0.49 +1.7 1,361,985 + ABZR87_RS22295 0.49 +1.9 1,361,986 - ABZR87_RS22295 0.49 +2.5 1,361,986 - ABZR87_RS22295 0.49 +2.2 1,361,986 - ABZR87_RS22295 0.49 +2.8 1,361,986 - ABZR87_RS22295 0.49 +1.6 1,361,986 - ABZR87_RS22295 0.49 +0.8 1,361,986 - ABZR87_RS22295 0.49 +1.3 1,361,986 - ABZR87_RS22295 0.49 +2.5 1,361,986 - ABZR87_RS22295 0.49 +2.2 1,361,986 - ABZR87_RS22295 0.49 +2.6 1,361,986 - ABZR87_RS22295 0.49 +2.2 1,361,986 - ABZR87_RS22295 0.49 +2.1 1,361,986 - ABZR87_RS22295 0.49 +2.1 1,361,986 - ABZR87_RS22295 0.49 +1.9 1,361,986 - ABZR87_RS22295 0.49 +1.7 1,361,986 - ABZR87_RS22295 0.49 +1.8 1,361,986 - ABZR87_RS22295 0.49 +2.1 1,361,986 - ABZR87_RS22295 0.49 +2.3 1,362,062 + ABZR87_RS22295 0.58 +2.1 1,362,062 + ABZR87_RS22295 0.58 +1.9 1,362,062 + ABZR87_RS22295 0.58 +2.3 1,362,062 + ABZR87_RS22295 0.58 +1.6 1,362,062 + ABZR87_RS22295 0.58 +2.3 1,362,062 + ABZR87_RS22295 0.58 +2.1 1,362,062 + ABZR87_RS22295 0.58 +2.5 1,362,062 + ABZR87_RS22295 0.58 +3.0 1,362,062 + ABZR87_RS22295 0.58 +1.5 1,362,062 + ABZR87_RS22295 0.58 +2.3 1,362,062 + ABZR87_RS22295 0.58 +1.7 1,362,063 - ABZR87_RS22295 0.58 +1.6 1,362,063 - ABZR87_RS22295 0.58 +2.6 1,362,063 - ABZR87_RS22295 0.58 +1.7 1,362,063 - ABZR87_RS22295 0.58 +1.4 1,362,063 - ABZR87_RS22295 0.58 +2.4 1,362,063 - ABZR87_RS22295 0.58 +3.2 1,362,063 - ABZR87_RS22295 0.58 +1.3 1,362,063 - ABZR87_RS22295 0.58 +2.3 1,362,063 - ABZR87_RS22295 0.58 +2.3 1,362,063 - ABZR87_RS22295 0.58 +2.0 1,362,065 + ABZR87_RS22295 0.58 +2.9 1,362,065 + ABZR87_RS22295 0.58 +1.8 1,362,065 + ABZR87_RS22295 0.58 +2.0 1,362,065 + ABZR87_RS22295 0.58 +2.2 1,362,065 + ABZR87_RS22295 0.58 +1.2 1,362,065 + ABZR87_RS22295 0.58 +2.0 1,362,065 + ABZR87_RS22295 0.58 +3.6 1,362,065 + ABZR87_RS22295 0.58 +2.2 1,362,065 + ABZR87_RS22295 0.58 -0.6 1,362,066 - ABZR87_RS22295 0.58 +1.7 1,362,066 - ABZR87_RS22295 0.58 +1.8 1,362,066 - ABZR87_RS22295 0.58 +1.1 1,362,066 - ABZR87_RS22295 0.58 +2.1 1,362,066 - ABZR87_RS22295 0.58 +2.1 1,362,066 - ABZR87_RS22295 0.58 +2.9 1,362,066 - ABZR87_RS22295 0.58 +0.7 1,362,066 - ABZR87_RS22295 0.58 +1.8 1,362,066 - ABZR87_RS22295 0.58 +0.9 1,362,066 - ABZR87_RS22295 0.58 +2.0 1,362,066 - ABZR87_RS22295 0.58 +1.4 1,362,066 - ABZR87_RS22295 0.58 +2.1 1,362,066 - ABZR87_RS22295 0.58 +1.3 1,362,107 - ABZR87_RS22295 0.63 +1.9 1,362,192 + ABZR87_RS22295 0.72 +2.0 1,362,192 + ABZR87_RS22295 0.72 +2.8 1,362,192 + ABZR87_RS22295 0.72 +1.8 1,362,193 - ABZR87_RS22295 0.73 +2.1 1,362,193 - ABZR87_RS22295 0.73 +2.4 1,362,193 - ABZR87_RS22295 0.73 +2.0 1,362,193 - ABZR87_RS22295 0.73 +1.3 1,362,193 - ABZR87_RS22295 0.73 +1.9 1,362,432 - +0.1 1,362,432 - +1.0 1,362,432 - +1.1 1,362,464 + +1.0 1,362,464 + -0.1 1,362,483 + -0.2 1,362,484 - -0.9 1,362,484 - -0.6 1,362,484 - +0.2 1,362,493 + +0.2 1,362,527 + +0.4 1,362,527 + -1.2 1,362,527 + -0.6 1,362,527 + -0.3 1,362,527 + -0.7 1,362,527 + +0.1 1,362,528 - +1.3 1,362,528 - +0.9 1,362,528 - +1.3 1,362,528 - +1.1 1,362,570 + +0.7 1,362,570 + +0.1 1,362,570 + +0.7 1,362,570 + +0.1 1,362,571 - +0.6 1,362,571 - -1.1 1,362,571 - +1.3 1,362,571 - +1.3 1,362,571 - +0.0 1,362,582 + +0.5 1,362,582 + +0.2 1,362,583 - +0.3 1,362,583 - -1.3 1,362,583 - +0.2 1,362,583 - +0.4 1,362,583 - +0.8 1,362,654 + ABZR87_RS22300 0.31 -1.6 1,362,905 - +0.7 1,362,905 - +1.1 1,362,996 + -0.2 1,362,996 + -0.1 1,362,996 + -0.8 1,362,996 + -0.1 1,362,996 + -0.3 1,362,996 + -2.6 1,362,996 + +1.6 1,362,996 + -1.0 1,362,996 + +0.2 1,362,996 + -0.6 1,362,997 - +0.1 1,362,997 - +0.2 1,362,997 - -0.1 1,363,235 + ABZR87_RS22305 0.50 +0.5 1,363,235 + ABZR87_RS22305 0.50 +1.4 1,363,235 + ABZR87_RS22305 0.50 +1.3 1,363,235 + ABZR87_RS22305 0.50 +1.5 1,363,235 + ABZR87_RS22305 0.50 +1.3 1,363,236 - ABZR87_RS22305 0.50 +2.0 1,363,236 - ABZR87_RS22305 0.50 +1.3 1,363,236 - ABZR87_RS22305 0.50 +1.2 1,363,236 - ABZR87_RS22305 0.50 +1.6 1,363,236 - ABZR87_RS22305 0.50 +0.7 1,363,407 - ABZR87_RS22305 0.87 +0.8 1,363,407 - ABZR87_RS22305 0.87 +1.2
Or see this region's nucleotide sequence