Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21050

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21045 and ABZR87_RS21050 are separated by 29 nucleotidesABZR87_RS21050 and ABZR87_RS21055 are separated by 2 nucleotides ABZR87_RS21045: ABZR87_RS21045 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,105,081 to 1,106,181 _RS21045 ABZR87_RS21050: ABZR87_RS21050 - DUF1295 domain-containing protein, at 1,106,211 to 1,106,987 _RS21050 ABZR87_RS21055: ABZR87_RS21055 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,106,990 to 1,108,189 _RS21055 Position (kb) 1106 1107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1105.286 kb on + strand, within ABZR87_RS21045at 1105.385 kb on + strand, within ABZR87_RS21045at 1105.386 kb on - strand, within ABZR87_RS21045at 1105.514 kb on + strand, within ABZR87_RS21045at 1105.514 kb on + strand, within ABZR87_RS21045at 1105.515 kb on - strand, within ABZR87_RS21045at 1105.802 kb on + strand, within ABZR87_RS21045at 1105.857 kb on - strand, within ABZR87_RS21045at 1105.871 kb on + strand, within ABZR87_RS21045at 1105.922 kb on + strand, within ABZR87_RS21045at 1106.200 kb on + strandat 1106.201 kb on - strandat 1106.201 kb on - strandat 1106.201 kb on - strandat 1106.209 kb on + strandat 1106.238 kb on + strandat 1106.238 kb on + strandat 1106.239 kb on - strandat 1106.257 kb on + strandat 1106.257 kb on + strandat 1106.257 kb on + strandat 1106.266 kb on + strandat 1106.267 kb on - strandat 1106.267 kb on - strandat 1106.288 kb on + strandat 1106.288 kb on + strandat 1106.398 kb on + strand, within ABZR87_RS21050at 1106.398 kb on + strand, within ABZR87_RS21050at 1106.399 kb on - strand, within ABZR87_RS21050at 1106.399 kb on - strand, within ABZR87_RS21050at 1106.428 kb on + strand, within ABZR87_RS21050at 1107.200 kb on + strand, within ABZR87_RS21055at 1107.200 kb on + strand, within ABZR87_RS21055at 1107.200 kb on + strand, within ABZR87_RS21055at 1107.201 kb on - strand, within ABZR87_RS21055at 1107.306 kb on - strand, within ABZR87_RS21055at 1107.385 kb on - strand, within ABZR87_RS21055at 1107.518 kb on - strand, within ABZR87_RS21055at 1107.757 kb on - strand, within ABZR87_RS21055at 1107.759 kb on - strand, within ABZR87_RS21055at 1107.777 kb on + strand, within ABZR87_RS21055at 1107.777 kb on + strand, within ABZR87_RS21055at 1107.778 kb on - strand, within ABZR87_RS21055at 1107.958 kb on - strand, within ABZR87_RS21055

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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1,105,286 + ABZR87_RS21045 0.19 -1.8
1,105,385 + ABZR87_RS21045 0.28 -0.2
1,105,386 - ABZR87_RS21045 0.28 -0.3
1,105,514 + ABZR87_RS21045 0.39 +0.8
1,105,514 + ABZR87_RS21045 0.39 -3.6
1,105,515 - ABZR87_RS21045 0.39 +1.4
1,105,802 + ABZR87_RS21045 0.65 +0.6
1,105,857 - ABZR87_RS21045 0.70 -1.0
1,105,871 + ABZR87_RS21045 0.72 -1.0
1,105,922 + ABZR87_RS21045 0.76 -1.2
1,106,200 + -0.8
1,106,201 - -0.8
1,106,201 - +0.6
1,106,201 - +0.8
1,106,209 + -1.1
1,106,238 + -0.4
1,106,238 + +2.0
1,106,239 - +0.3
1,106,257 + -1.3
1,106,257 + -0.6
1,106,257 + -2.4
1,106,266 + -1.5
1,106,267 - -0.5
1,106,267 - -1.0
1,106,288 + -1.9
1,106,288 + -2.5
1,106,398 + ABZR87_RS21050 0.24 -3.1
1,106,398 + ABZR87_RS21050 0.24 -1.7
1,106,399 - ABZR87_RS21050 0.24 -0.6
1,106,399 - ABZR87_RS21050 0.24 -1.3
1,106,428 + ABZR87_RS21050 0.28 -0.9
1,107,200 + ABZR87_RS21055 0.17 -1.6
1,107,200 + ABZR87_RS21055 0.17 -2.1
1,107,200 + ABZR87_RS21055 0.17 -2.7
1,107,201 - ABZR87_RS21055 0.18 -0.8
1,107,306 - ABZR87_RS21055 0.26 -0.5
1,107,385 - ABZR87_RS21055 0.33 +0.8
1,107,518 - ABZR87_RS21055 0.44 -1.5
1,107,757 - ABZR87_RS21055 0.64 +0.0
1,107,759 - ABZR87_RS21055 0.64 -0.5
1,107,777 + ABZR87_RS21055 0.66 -0.7
1,107,777 + ABZR87_RS21055 0.66 +0.2
1,107,778 - ABZR87_RS21055 0.66 -2.1
1,107,958 - ABZR87_RS21055 0.81 -1.0

Or see this region's nucleotide sequence