Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19115

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19110 and ABZR87_RS19115 are separated by 162 nucleotidesABZR87_RS19115 and ABZR87_RS19120 are separated by 11 nucleotides ABZR87_RS19110: ABZR87_RS19110 - MurR/RpiR family transcriptional regulator, at 648,267 to 649,136 _RS19110 ABZR87_RS19115: ABZR87_RS19115 - amino acid deaminase, at 649,299 to 650,576 _RS19115 ABZR87_RS19120: ABZR87_RS19120 - sugar kinase, at 650,588 to 651,514 _RS19120 Position (kb) 649 650 651Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 648.319 kb on + strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.333 kb on + strandat 648.334 kb on - strandat 648.529 kb on + strand, within ABZR87_RS19110at 648.567 kb on + strand, within ABZR87_RS19110at 648.568 kb on - strand, within ABZR87_RS19110at 648.568 kb on - strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.915 kb on + strand, within ABZR87_RS19110at 648.915 kb on - strand, within ABZR87_RS19110at 648.916 kb on - strand, within ABZR87_RS19110at 648.916 kb on - strand, within ABZR87_RS19110at 649.148 kb on + strandat 649.148 kb on + strandat 649.148 kb on + strandat 649.149 kb on - strandat 649.149 kb on - strandat 649.215 kb on + strandat 649.247 kb on + strandat 649.247 kb on + strandat 649.248 kb on - strandat 649.248 kb on - strandat 649.248 kb on - strandat 649.417 kb on + strandat 649.418 kb on - strandat 649.418 kb on - strandat 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.929 kb on + strand, within ABZR87_RS19115at 649.929 kb on + strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.984 kb on + strand, within ABZR87_RS19115at 649.985 kb on - strand, within ABZR87_RS19115at 649.985 kb on - strand, within ABZR87_RS19115at 650.099 kb on + strand, within ABZR87_RS19115at 650.139 kb on + strand, within ABZR87_RS19115at 650.139 kb on + strand, within ABZR87_RS19115at 650.140 kb on - strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.163 kb on + strand, within ABZR87_RS19115at 650.253 kb on + strand, within ABZR87_RS19115at 650.253 kb on + strand, within ABZR87_RS19115at 650.253 kb on + strand, within ABZR87_RS19115at 650.254 kb on - strand, within ABZR87_RS19115at 650.424 kb on + strand, within ABZR87_RS19115at 650.424 kb on + strand, within ABZR87_RS19115at 650.424 kb on + strand, within ABZR87_RS19115at 650.425 kb on - strand, within ABZR87_RS19115at 650.425 kb on - strand, within ABZR87_RS19115at 650.541 kb on + strandat 650.541 kb on + strandat 650.541 kb on + strandat 650.542 kb on - strandat 650.542 kb on - strandat 650.568 kb on + strandat 650.568 kb on + strandat 650.568 kb on + strandat 650.569 kb on - strandat 650.569 kb on - strandat 650.569 kb on - strandat 650.606 kb on + strandat 650.680 kb on + strandat 650.729 kb on + strand, within ABZR87_RS19120at 650.730 kb on - strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.731 kb on + strand, within ABZR87_RS19120at 650.732 kb on - strand, within ABZR87_RS19120at 650.732 kb on - strand, within ABZR87_RS19120at 650.807 kb on + strand, within ABZR87_RS19120at 650.807 kb on + strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.808 kb on - strand, within ABZR87_RS19120at 650.843 kb on + strand, within ABZR87_RS19120at 650.843 kb on + strand, within ABZR87_RS19120at 650.883 kb on - strand, within ABZR87_RS19120at 650.883 kb on - strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.166 kb on - strand, within ABZR87_RS19120at 651.166 kb on - strand, within ABZR87_RS19120at 651.208 kb on + strand, within ABZR87_RS19120at 651.266 kb on + strand, within ABZR87_RS19120at 651.267 kb on - strand, within ABZR87_RS19120at 651.267 kb on - strand, within ABZR87_RS19120at 651.307 kb on + strand, within ABZR87_RS19120at 651.308 kb on - strand, within ABZR87_RS19120at 651.308 kb on - strand, within ABZR87_RS19120at 651.408 kb on - strand, within ABZR87_RS19120at 651.433 kb on + strandat 651.443 kb on + strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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648,319 + -1.2
648,320 - -0.5
648,320 - -0.1
648,320 - +0.4
648,320 - +1.0
648,333 + -1.1
648,334 - +0.7
648,529 + ABZR87_RS19110 0.30 -1.1
648,567 + ABZR87_RS19110 0.34 -3.0
648,568 - ABZR87_RS19110 0.35 +1.0
648,568 - ABZR87_RS19110 0.35 +0.5
648,652 + ABZR87_RS19110 0.44 +0.2
648,652 + ABZR87_RS19110 0.44 -0.5
648,652 + ABZR87_RS19110 0.44 +0.8
648,652 + ABZR87_RS19110 0.44 +0.7
648,652 + ABZR87_RS19110 0.44 +0.9
648,652 + ABZR87_RS19110 0.44 +0.7
648,652 + ABZR87_RS19110 0.44 -0.2
648,653 - ABZR87_RS19110 0.44 +0.1
648,653 - ABZR87_RS19110 0.44 +0.2
648,653 - ABZR87_RS19110 0.44 +2.0
648,653 - ABZR87_RS19110 0.44 +1.6
648,653 - ABZR87_RS19110 0.44 +1.1
648,653 - ABZR87_RS19110 0.44 +1.1
648,653 - ABZR87_RS19110 0.44 +1.9
648,653 - ABZR87_RS19110 0.44 +0.2
648,653 - ABZR87_RS19110 0.44 +1.0
648,653 - ABZR87_RS19110 0.44 +1.1
648,653 - ABZR87_RS19110 0.44 +2.2
648,653 - ABZR87_RS19110 0.44 -0.5
648,915 + ABZR87_RS19110 0.74 -0.5
648,915 - ABZR87_RS19110 0.74 -2.3
648,916 - ABZR87_RS19110 0.75 +0.2
648,916 - ABZR87_RS19110 0.75 +0.6
649,148 + -1.0
649,148 + -0.2
649,148 + +0.4
649,149 - +1.5
649,149 - +0.7
649,215 + -1.7
649,247 + -0.9
649,247 + +0.4
649,248 - +0.2
649,248 - +0.6
649,248 - +2.5
649,417 + +0.6
649,418 - +0.0
649,418 - -0.3
649,629 + ABZR87_RS19115 0.26 -0.0
649,629 + ABZR87_RS19115 0.26 +1.4
649,629 + ABZR87_RS19115 0.26 -1.3
649,629 + ABZR87_RS19115 0.26 -1.3
649,629 + ABZR87_RS19115 0.26 -0.1
649,629 + ABZR87_RS19115 0.26 -1.0
649,630 - ABZR87_RS19115 0.26 +0.3
649,630 - ABZR87_RS19115 0.26 +2.9
649,630 - ABZR87_RS19115 0.26 +0.1
649,630 - ABZR87_RS19115 0.26 -1.1
649,929 + ABZR87_RS19115 0.49 +0.1
649,929 + ABZR87_RS19115 0.49 +0.1
649,930 - ABZR87_RS19115 0.49 -2.7
649,930 - ABZR87_RS19115 0.49 -0.2
649,930 - ABZR87_RS19115 0.49 +1.3
649,984 + ABZR87_RS19115 0.54 +0.9
649,985 - ABZR87_RS19115 0.54 +0.3
649,985 - ABZR87_RS19115 0.54 +0.2
650,099 + ABZR87_RS19115 0.63 +0.7
650,139 + ABZR87_RS19115 0.66 +0.9
650,139 + ABZR87_RS19115 0.66 -0.7
650,140 - ABZR87_RS19115 0.66 -1.1
650,163 + ABZR87_RS19115 0.68 +1.5
650,163 + ABZR87_RS19115 0.68 -0.6
650,163 + ABZR87_RS19115 0.68 -0.1
650,163 + ABZR87_RS19115 0.68 +0.5
650,253 + ABZR87_RS19115 0.75 +3.5
650,253 + ABZR87_RS19115 0.75 +0.0
650,253 + ABZR87_RS19115 0.75 +0.7
650,254 - ABZR87_RS19115 0.75 +0.9
650,424 + ABZR87_RS19115 0.88 +0.7
650,424 + ABZR87_RS19115 0.88 +0.6
650,424 + ABZR87_RS19115 0.88 +0.0
650,425 - ABZR87_RS19115 0.88 -0.4
650,425 - ABZR87_RS19115 0.88 -0.8
650,541 + +1.2
650,541 + +0.7
650,541 + +0.8
650,542 - -0.4
650,542 - -0.3
650,568 + +0.1
650,568 + +0.6
650,568 + -0.6
650,569 - +1.7
650,569 - -0.7
650,569 - +0.3
650,606 + +0.3
650,680 + +0.1
650,729 + ABZR87_RS19120 0.15 +0.0
650,730 - ABZR87_RS19120 0.15 +0.8
650,731 + ABZR87_RS19120 0.15 +0.1
650,731 + ABZR87_RS19120 0.15 +1.0
650,731 + ABZR87_RS19120 0.15 +0.2
650,731 + ABZR87_RS19120 0.15 +0.7
650,732 - ABZR87_RS19120 0.16 +0.6
650,732 - ABZR87_RS19120 0.16 -1.5
650,807 + ABZR87_RS19120 0.24 -1.0
650,807 + ABZR87_RS19120 0.24 +0.9
650,808 - ABZR87_RS19120 0.24 +0.3
650,808 - ABZR87_RS19120 0.24 +0.4
650,808 - ABZR87_RS19120 0.24 +0.5
650,808 - ABZR87_RS19120 0.24 +1.2
650,808 - ABZR87_RS19120 0.24 -0.4
650,808 - ABZR87_RS19120 0.24 +1.0
650,808 - ABZR87_RS19120 0.24 -0.8
650,843 + ABZR87_RS19120 0.28 -1.2
650,843 + ABZR87_RS19120 0.28 -0.6
650,883 - ABZR87_RS19120 0.32 -1.0
650,883 - ABZR87_RS19120 0.32 -0.1
651,165 + ABZR87_RS19120 0.62 +0.5
651,165 + ABZR87_RS19120 0.62 +0.5
651,165 + ABZR87_RS19120 0.62 +1.4
651,165 + ABZR87_RS19120 0.62 +0.5
651,165 + ABZR87_RS19120 0.62 -0.2
651,166 - ABZR87_RS19120 0.62 -1.8
651,166 - ABZR87_RS19120 0.62 +0.3
651,208 + ABZR87_RS19120 0.67 -2.6
651,266 + ABZR87_RS19120 0.73 -1.9
651,267 - ABZR87_RS19120 0.73 -1.9
651,267 - ABZR87_RS19120 0.73 +0.1
651,307 + ABZR87_RS19120 0.78 -0.1
651,308 - ABZR87_RS19120 0.78 +0.3
651,308 - ABZR87_RS19120 0.78 -0.1
651,408 - ABZR87_RS19120 0.88 +0.3
651,433 + +0.7
651,443 + +0.5
651,446 - +0.1
651,446 - -0.7
651,446 - +1.0
651,446 - -1.7

Or see this region's nucleotide sequence