Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19110

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19105 and ABZR87_RS19110 are separated by 1 nucleotidesABZR87_RS19110 and ABZR87_RS19115 are separated by 162 nucleotides ABZR87_RS19105: ABZR87_RS19105 - amidohydrolase family protein, at 646,769 to 648,265 _RS19105 ABZR87_RS19110: ABZR87_RS19110 - MurR/RpiR family transcriptional regulator, at 648,267 to 649,136 _RS19110 ABZR87_RS19115: ABZR87_RS19115 - amino acid deaminase, at 649,299 to 650,576 _RS19115 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.409 kb on + strand, within ABZR87_RS19105at 647.410 kb on - strand, within ABZR87_RS19105at 647.410 kb on - strand, within ABZR87_RS19105at 647.614 kb on - strand, within ABZR87_RS19105at 647.689 kb on - strand, within ABZR87_RS19105at 647.877 kb on + strand, within ABZR87_RS19105at 647.877 kb on + strand, within ABZR87_RS19105at 648.064 kb on + strand, within ABZR87_RS19105at 648.064 kb on + strand, within ABZR87_RS19105at 648.065 kb on - strand, within ABZR87_RS19105at 648.065 kb on - strand, within ABZR87_RS19105at 648.319 kb on + strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.320 kb on - strandat 648.333 kb on + strandat 648.334 kb on - strandat 648.529 kb on + strand, within ABZR87_RS19110at 648.567 kb on + strand, within ABZR87_RS19110at 648.568 kb on - strand, within ABZR87_RS19110at 648.568 kb on - strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.652 kb on + strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.653 kb on - strand, within ABZR87_RS19110at 648.915 kb on + strand, within ABZR87_RS19110at 648.915 kb on - strand, within ABZR87_RS19110at 648.916 kb on - strand, within ABZR87_RS19110at 648.916 kb on - strand, within ABZR87_RS19110at 649.148 kb on + strandat 649.148 kb on + strandat 649.148 kb on + strandat 649.149 kb on - strandat 649.149 kb on - strandat 649.215 kb on + strandat 649.247 kb on + strandat 649.247 kb on + strandat 649.248 kb on - strandat 649.248 kb on - strandat 649.248 kb on - strandat 649.417 kb on + strandat 649.418 kb on - strandat 649.418 kb on - strandat 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.629 kb on + strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.630 kb on - strand, within ABZR87_RS19115at 649.929 kb on + strand, within ABZR87_RS19115at 649.929 kb on + strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.930 kb on - strand, within ABZR87_RS19115at 649.984 kb on + strand, within ABZR87_RS19115at 649.985 kb on - strand, within ABZR87_RS19115at 649.985 kb on - strand, within ABZR87_RS19115at 650.099 kb on + strand, within ABZR87_RS19115

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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647,409 + ABZR87_RS19105 0.43 -1.1
647,409 + ABZR87_RS19105 0.43 -2.8
647,409 + ABZR87_RS19105 0.43 -1.7
647,409 + ABZR87_RS19105 0.43 -1.4
647,410 - ABZR87_RS19105 0.43 -0.9
647,410 - ABZR87_RS19105 0.43 -0.1
647,614 - ABZR87_RS19105 0.56 -0.8
647,689 - ABZR87_RS19105 0.61 +0.0
647,877 + ABZR87_RS19105 0.74 -0.6
647,877 + ABZR87_RS19105 0.74 -2.1
648,064 + ABZR87_RS19105 0.87 -2.3
648,064 + ABZR87_RS19105 0.87 -0.5
648,065 - ABZR87_RS19105 0.87 -0.1
648,065 - ABZR87_RS19105 0.87 -0.7
648,319 + -1.2
648,320 - -0.5
648,320 - -0.1
648,320 - +0.4
648,320 - +1.0
648,333 + -1.1
648,334 - +0.7
648,529 + ABZR87_RS19110 0.30 -1.1
648,567 + ABZR87_RS19110 0.34 -3.0
648,568 - ABZR87_RS19110 0.35 +1.0
648,568 - ABZR87_RS19110 0.35 +0.5
648,652 + ABZR87_RS19110 0.44 +0.2
648,652 + ABZR87_RS19110 0.44 -0.5
648,652 + ABZR87_RS19110 0.44 +0.8
648,652 + ABZR87_RS19110 0.44 +0.7
648,652 + ABZR87_RS19110 0.44 +0.9
648,652 + ABZR87_RS19110 0.44 +0.7
648,652 + ABZR87_RS19110 0.44 -0.2
648,653 - ABZR87_RS19110 0.44 +0.1
648,653 - ABZR87_RS19110 0.44 +0.2
648,653 - ABZR87_RS19110 0.44 +2.0
648,653 - ABZR87_RS19110 0.44 +1.6
648,653 - ABZR87_RS19110 0.44 +1.1
648,653 - ABZR87_RS19110 0.44 +1.1
648,653 - ABZR87_RS19110 0.44 +1.9
648,653 - ABZR87_RS19110 0.44 +0.2
648,653 - ABZR87_RS19110 0.44 +1.0
648,653 - ABZR87_RS19110 0.44 +1.1
648,653 - ABZR87_RS19110 0.44 +2.2
648,653 - ABZR87_RS19110 0.44 -0.5
648,915 + ABZR87_RS19110 0.74 -0.5
648,915 - ABZR87_RS19110 0.74 -2.3
648,916 - ABZR87_RS19110 0.75 +0.2
648,916 - ABZR87_RS19110 0.75 +0.6
649,148 + -1.0
649,148 + -0.2
649,148 + +0.4
649,149 - +1.5
649,149 - +0.7
649,215 + -1.7
649,247 + -0.9
649,247 + +0.4
649,248 - +0.2
649,248 - +0.6
649,248 - +2.5
649,417 + +0.6
649,418 - +0.0
649,418 - -0.3
649,629 + ABZR87_RS19115 0.26 -0.0
649,629 + ABZR87_RS19115 0.26 +1.4
649,629 + ABZR87_RS19115 0.26 -1.3
649,629 + ABZR87_RS19115 0.26 -1.3
649,629 + ABZR87_RS19115 0.26 -0.1
649,629 + ABZR87_RS19115 0.26 -1.0
649,630 - ABZR87_RS19115 0.26 +0.3
649,630 - ABZR87_RS19115 0.26 +2.9
649,630 - ABZR87_RS19115 0.26 +0.1
649,630 - ABZR87_RS19115 0.26 -1.1
649,929 + ABZR87_RS19115 0.49 +0.1
649,929 + ABZR87_RS19115 0.49 +0.1
649,930 - ABZR87_RS19115 0.49 -2.7
649,930 - ABZR87_RS19115 0.49 -0.2
649,930 - ABZR87_RS19115 0.49 +1.3
649,984 + ABZR87_RS19115 0.54 +0.9
649,985 - ABZR87_RS19115 0.54 +0.3
649,985 - ABZR87_RS19115 0.54 +0.2
650,099 + ABZR87_RS19115 0.63 +0.7

Or see this region's nucleotide sequence