Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18845 and ABZR87_RS18850 are separated by 433 nucleotides ABZR87_RS18850 and ABZR87_RS18855 are separated by 112 nucleotides ABZR87_RS18855 and ABZR87_RS18860 are separated by 162 nucleotides
ABZR87_RS18845: ABZR87_RS18845 - GbsR/MarR family transcriptional regulator, at 580,854 to 581,414
_RS18845
ABZR87_RS18850: ABZR87_RS18850 - PAS domain-containing methyl-accepting chemotaxis protein, at 581,848 to 583,392
_RS18850
ABZR87_RS18855: ABZR87_RS18855 - GlsB/YeaQ/YmgE family stress response membrane protein, at 583,505 to 583,759
_RS18855
ABZR87_RS18860: ABZR87_RS18860 - hypothetical protein, at 583,922 to 584,215
_RS18860
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 580.855 kb on + strand at 580.855 kb on + strand at 580.856 kb on - strand at 580.856 kb on - strand at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.910 kb on + strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 580.911 kb on - strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.008 kb on + strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.009 kb on - strand, within ABZR87_RS18845 at 581.323 kb on + strand, within ABZR87_RS18845 at 581.324 kb on - strand, within ABZR87_RS18845 at 581.456 kb on - strand at 581.533 kb on + strand at 581.533 kb on + strand at 581.534 kb on - strand at 581.534 kb on - strand at 581.534 kb on - strand at 581.575 kb on + strand at 581.685 kb on - strand at 581.685 kb on - strand at 581.691 kb on + strand at 581.691 kb on + strand at 581.691 kb on + strand at 581.692 kb on - strand at 581.789 kb on - strand at 581.869 kb on - strand at 581.881 kb on + strand at 581.932 kb on + strand at 581.932 kb on + strand at 581.932 kb on + strand at 581.932 kb on + strand at 581.932 kb on + strand at 581.932 kb on + strand at 581.933 kb on - strand at 581.933 kb on - strand at 581.933 kb on - strand at 581.933 kb on - strand at 581.933 kb on - strand at 581.941 kb on + strand at 581.941 kb on + strand at 581.942 kb on - strand at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.007 kb on - strand, within ABZR87_RS18850 at 582.028 kb on - strand, within ABZR87_RS18850 at 582.028 kb on - strand, within ABZR87_RS18850 at 582.051 kb on + strand, within ABZR87_RS18850 at 582.051 kb on + strand, within ABZR87_RS18850 at 582.051 kb on + strand, within ABZR87_RS18850 at 582.051 kb on + strand, within ABZR87_RS18850 at 582.052 kb on - strand, within ABZR87_RS18850 at 582.124 kb on + strand, within ABZR87_RS18850 at 582.125 kb on - strand, within ABZR87_RS18850 at 582.125 kb on - strand, within ABZR87_RS18850 at 582.125 kb on - strand, within ABZR87_RS18850 at 582.159 kb on + strand, within ABZR87_RS18850 at 582.178 kb on + strand, within ABZR87_RS18850 at 582.178 kb on + strand, within ABZR87_RS18850 at 582.178 kb on + strand, within ABZR87_RS18850 at 582.179 kb on - strand, within ABZR87_RS18850 at 582.179 kb on - strand, within ABZR87_RS18850 at 582.179 kb on - strand, within ABZR87_RS18850 at 582.179 kb on - strand, within ABZR87_RS18850 at 582.179 kb on - strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.180 kb on + strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.181 kb on - strand, within ABZR87_RS18850 at 582.235 kb on + strand, within ABZR87_RS18850 at 582.235 kb on + strand, within ABZR87_RS18850 at 582.235 kb on + strand, within ABZR87_RS18850 at 582.235 kb on + strand, within ABZR87_RS18850 at 582.236 kb on - strand, within ABZR87_RS18850 at 582.236 kb on - strand, within ABZR87_RS18850 at 582.236 kb on - strand, within ABZR87_RS18850 at 583.451 kb on + strand at 583.451 kb on + strand at 583.451 kb on + strand at 583.452 kb on - strand at 583.452 kb on - strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.454 kb on + strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.455 kb on - strand at 583.460 kb on + strand at 583.460 kb on + strand at 583.460 kb on + strand at 583.460 kb on + strand at 583.467 kb on + strand at 583.467 kb on + strand at 583.468 kb on - strand at 583.468 kb on - strand at 583.468 kb on - strand at 583.468 kb on - strand at 583.841 kb on + strand at 583.841 kb on + strand at 583.841 kb on + strand at 583.842 kb on - strand at 583.842 kb on - strand at 583.842 kb on - strand at 583.958 kb on + strand, within ABZR87_RS18860 at 583.959 kb on - strand, within ABZR87_RS18860 at 584.015 kb on + strand, within ABZR87_RS18860 at 584.016 kb on - strand, within ABZR87_RS18860 at 584.016 kb on - strand, within ABZR87_RS18860 at 584.022 kb on - strand, within ABZR87_RS18860 at 584.030 kb on + strand, within ABZR87_RS18860 at 584.076 kb on + strand, within ABZR87_RS18860 at 584.077 kb on - strand, within ABZR87_RS18860 at 584.210 kb on + strand at 584.211 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB remove 580,855 + +0.0 580,855 + -2.3 580,856 - +0.3 580,856 - -0.9 580,910 + ABZR87_RS18845 0.10 -0.1 580,910 + ABZR87_RS18845 0.10 -1.2 580,910 + ABZR87_RS18845 0.10 -0.1 580,910 + ABZR87_RS18845 0.10 -0.6 580,910 + ABZR87_RS18845 0.10 +0.2 580,910 + ABZR87_RS18845 0.10 -0.4 580,910 + ABZR87_RS18845 0.10 -1.6 580,911 - ABZR87_RS18845 0.10 -0.1 580,911 - ABZR87_RS18845 0.10 +0.3 580,911 - ABZR87_RS18845 0.10 +0.2 580,911 - ABZR87_RS18845 0.10 +0.0 580,911 - ABZR87_RS18845 0.10 -1.4 581,008 + ABZR87_RS18845 0.27 -0.1 581,008 + ABZR87_RS18845 0.27 +0.3 581,008 + ABZR87_RS18845 0.27 -2.0 581,009 - ABZR87_RS18845 0.28 +0.0 581,009 - ABZR87_RS18845 0.28 -0.6 581,009 - ABZR87_RS18845 0.28 +0.1 581,009 - ABZR87_RS18845 0.28 +0.2 581,009 - ABZR87_RS18845 0.28 +0.9 581,323 + ABZR87_RS18845 0.84 -1.7 581,324 - ABZR87_RS18845 0.84 -2.0 581,456 - -0.6 581,533 + -2.0 581,533 + -0.6 581,534 - +0.3 581,534 - -1.3 581,534 - +1.2 581,575 + +0.4 581,685 - +0.5 581,685 - +0.8 581,691 + +0.7 581,691 + -0.5 581,691 + -0.9 581,692 - +2.2 581,789 - -0.3 581,869 - +0.2 581,881 + +1.5 581,932 + +1.6 581,932 + +1.6 581,932 + +0.7 581,932 + +0.4 581,932 + +0.5 581,932 + +2.0 581,933 - +0.3 581,933 - +1.0 581,933 - +1.1 581,933 - +1.9 581,933 - +2.2 581,941 + +1.2 581,941 + +1.7 581,942 - +0.1 582,007 - ABZR87_RS18850 0.10 +0.1 582,007 - ABZR87_RS18850 0.10 +1.2 582,007 - ABZR87_RS18850 0.10 +0.7 582,007 - ABZR87_RS18850 0.10 +1.1 582,007 - ABZR87_RS18850 0.10 +2.4 582,007 - ABZR87_RS18850 0.10 +1.4 582,007 - ABZR87_RS18850 0.10 +0.3 582,007 - ABZR87_RS18850 0.10 +1.1 582,028 - ABZR87_RS18850 0.12 +2.0 582,028 - ABZR87_RS18850 0.12 +1.7 582,051 + ABZR87_RS18850 0.13 +1.2 582,051 + ABZR87_RS18850 0.13 +1.2 582,051 + ABZR87_RS18850 0.13 +0.5 582,051 + ABZR87_RS18850 0.13 +1.2 582,052 - ABZR87_RS18850 0.13 +0.7 582,124 + ABZR87_RS18850 0.18 +1.2 582,125 - ABZR87_RS18850 0.18 +1.1 582,125 - ABZR87_RS18850 0.18 -0.2 582,125 - ABZR87_RS18850 0.18 +1.3 582,159 + ABZR87_RS18850 0.20 -0.1 582,178 + ABZR87_RS18850 0.21 +1.3 582,178 + ABZR87_RS18850 0.21 +1.1 582,178 + ABZR87_RS18850 0.21 +1.5 582,179 - ABZR87_RS18850 0.21 +1.0 582,179 - ABZR87_RS18850 0.21 +2.8 582,179 - ABZR87_RS18850 0.21 +1.8 582,179 - ABZR87_RS18850 0.21 +1.7 582,179 - ABZR87_RS18850 0.21 +0.8 582,180 + ABZR87_RS18850 0.21 -0.1 582,180 + ABZR87_RS18850 0.21 +0.6 582,180 + ABZR87_RS18850 0.21 +1.3 582,180 + ABZR87_RS18850 0.21 +0.7 582,180 + ABZR87_RS18850 0.21 +2.5 582,180 + ABZR87_RS18850 0.21 +1.1 582,180 + ABZR87_RS18850 0.21 +2.1 582,180 + ABZR87_RS18850 0.21 +1.4 582,181 - ABZR87_RS18850 0.22 +1.1 582,181 - ABZR87_RS18850 0.22 +0.0 582,181 - ABZR87_RS18850 0.22 +1.3 582,181 - ABZR87_RS18850 0.22 +1.0 582,181 - ABZR87_RS18850 0.22 +0.4 582,181 - ABZR87_RS18850 0.22 +1.8 582,181 - ABZR87_RS18850 0.22 +1.5 582,181 - ABZR87_RS18850 0.22 +2.0 582,235 + ABZR87_RS18850 0.25 +0.6 582,235 + ABZR87_RS18850 0.25 +1.4 582,235 + ABZR87_RS18850 0.25 +1.6 582,235 + ABZR87_RS18850 0.25 +1.5 582,236 - ABZR87_RS18850 0.25 +0.3 582,236 - ABZR87_RS18850 0.25 +1.2 582,236 - ABZR87_RS18850 0.25 +1.2 583,451 + +0.9 583,451 + +0.4 583,451 + -1.8 583,452 - +1.1 583,452 - +1.1 583,454 + -0.5 583,454 + +1.0 583,454 + -0.5 583,454 + -0.1 583,454 + -1.4 583,454 + -0.4 583,454 + +0.7 583,454 + -0.3 583,454 + +0.1 583,455 - -0.1 583,455 - -0.3 583,455 - -0.3 583,455 - +1.0 583,455 - +0.5 583,455 - -0.0 583,455 - -1.9 583,455 - -0.9 583,455 - -0.5 583,455 - -0.1 583,455 - +1.1 583,455 - -0.2 583,455 - -0.8 583,455 - -1.0 583,460 + -0.9 583,460 + +0.7 583,460 + -0.3 583,460 + -0.2 583,467 + -0.6 583,467 + -0.3 583,468 - +0.7 583,468 - +1.4 583,468 - +1.3 583,468 - +0.8 583,841 + -0.7 583,841 + -0.8 583,841 + -0.8 583,842 - +1.0 583,842 - -0.1 583,842 - -1.1 583,958 + ABZR87_RS18860 0.12 -1.1 583,959 - ABZR87_RS18860 0.13 +1.5 584,015 + ABZR87_RS18860 0.32 +1.0 584,016 - ABZR87_RS18860 0.32 -0.2 584,016 - ABZR87_RS18860 0.32 -0.0 584,022 - ABZR87_RS18860 0.34 +0.8 584,030 + ABZR87_RS18860 0.37 +0.0 584,076 + ABZR87_RS18860 0.52 +0.0 584,077 - ABZR87_RS18860 0.53 -0.5 584,210 + -1.1 584,211 - -0.9
Or see this region's nucleotide sequence