Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18820

Experiment: rhizosphere EcoFAB sample 2; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18815 and ABZR87_RS18820 are separated by 78 nucleotidesABZR87_RS18820 and ABZR87_RS18825 are separated by 252 nucleotides ABZR87_RS18815: ABZR87_RS18815 - membrane dipeptidase, at 573,043 to 574,470 _RS18815 ABZR87_RS18820: ABZR87_RS18820 - hypothetical protein, at 574,549 to 576,651 _RS18820 ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022 _RS18825 Position (kb) 574 575 576 577Strain fitness (log2 ratio) -3 -2 -1 0 1at 573.722 kb on - strand, within ABZR87_RS18815at 573.898 kb on + strand, within ABZR87_RS18815at 573.899 kb on - strand, within ABZR87_RS18815at 573.899 kb on - strand, within ABZR87_RS18815at 573.937 kb on + strand, within ABZR87_RS18815at 573.937 kb on + strand, within ABZR87_RS18815at 573.937 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.066 kb on + strand, within ABZR87_RS18815at 574.067 kb on - strand, within ABZR87_RS18815at 574.067 kb on - strand, within ABZR87_RS18815at 574.067 kb on - strand, within ABZR87_RS18815at 574.067 kb on - strand, within ABZR87_RS18815at 574.067 kb on - strand, within ABZR87_RS18815at 574.122 kb on + strand, within ABZR87_RS18815at 574.123 kb on - strand, within ABZR87_RS18815at 574.354 kb on + strandat 574.355 kb on - strandat 574.355 kb on - strandat 574.438 kb on + strandat 574.439 kb on - strandat 574.547 kb on + strandat 574.547 kb on + strandat 574.548 kb on - strandat 574.548 kb on - strandat 574.559 kb on + strandat 574.560 kb on - strandat 574.560 kb on - strandat 574.967 kb on + strand, within ABZR87_RS18820at 574.967 kb on + strand, within ABZR87_RS18820at 574.967 kb on + strand, within ABZR87_RS18820at 574.967 kb on + strand, within ABZR87_RS18820at 574.967 kb on + strand, within ABZR87_RS18820at 574.968 kb on - strand, within ABZR87_RS18820at 574.968 kb on - strand, within ABZR87_RS18820at 575.003 kb on + strand, within ABZR87_RS18820at 575.003 kb on + strand, within ABZR87_RS18820at 575.003 kb on + strand, within ABZR87_RS18820at 575.003 kb on + strand, within ABZR87_RS18820at 575.004 kb on - strand, within ABZR87_RS18820at 575.004 kb on - strand, within ABZR87_RS18820at 575.004 kb on - strand, within ABZR87_RS18820at 575.018 kb on + strand, within ABZR87_RS18820at 575.019 kb on - strand, within ABZR87_RS18820at 575.735 kb on + strand, within ABZR87_RS18820at 575.735 kb on + strand, within ABZR87_RS18820at 576.000 kb on + strand, within ABZR87_RS18820at 576.001 kb on - strand, within ABZR87_RS18820at 576.177 kb on - strand, within ABZR87_RS18820at 576.806 kb on + strandat 576.806 kb on + strandat 576.806 kb on + strandat 576.807 kb on - strandat 576.807 kb on - strandat 576.807 kb on - strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.934 kb on + strandat 576.934 kb on + strandat 577.060 kb on + strand, within ABZR87_RS18825at 577.060 kb on + strand, within ABZR87_RS18825at 577.060 kb on + strand, within ABZR87_RS18825at 577.061 kb on - strand, within ABZR87_RS18825at 577.061 kb on - strand, within ABZR87_RS18825at 577.108 kb on + strand, within ABZR87_RS18825at 577.108 kb on + strand, within ABZR87_RS18825at 577.109 kb on - strand, within ABZR87_RS18825at 577.109 kb on - strand, within ABZR87_RS18825at 577.112 kb on - strand, within ABZR87_RS18825at 577.112 kb on - strand, within ABZR87_RS18825at 577.138 kb on + strand, within ABZR87_RS18825at 577.138 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.150 kb on - strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.219 kb on + strand, within ABZR87_RS18825at 577.220 kb on - strand, within ABZR87_RS18825at 577.220 kb on - strand, within ABZR87_RS18825

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere EcoFAB sample 2; outgrowth in LB
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573,722 - ABZR87_RS18815 0.48 +0.1
573,898 + ABZR87_RS18815 0.60 +0.5
573,899 - ABZR87_RS18815 0.60 -1.4
573,899 - ABZR87_RS18815 0.60 -1.4
573,937 + ABZR87_RS18815 0.63 -1.0
573,937 + ABZR87_RS18815 0.63 +0.1
573,937 + ABZR87_RS18815 0.63 -0.1
574,066 + ABZR87_RS18815 0.72 -1.3
574,066 + ABZR87_RS18815 0.72 +0.4
574,066 + ABZR87_RS18815 0.72 +0.6
574,066 + ABZR87_RS18815 0.72 +0.4
574,066 + ABZR87_RS18815 0.72 -1.6
574,066 + ABZR87_RS18815 0.72 -0.4
574,066 + ABZR87_RS18815 0.72 +0.3
574,067 - ABZR87_RS18815 0.72 +0.2
574,067 - ABZR87_RS18815 0.72 +0.2
574,067 - ABZR87_RS18815 0.72 -0.8
574,067 - ABZR87_RS18815 0.72 -0.8
574,067 - ABZR87_RS18815 0.72 +0.1
574,122 + ABZR87_RS18815 0.76 -0.2
574,123 - ABZR87_RS18815 0.76 +0.2
574,354 + -0.3
574,355 - +0.0
574,355 - +0.8
574,438 + -1.2
574,439 - -0.1
574,547 + +0.4
574,547 + -0.1
574,548 - +0.4
574,548 - -2.0
574,559 + -0.1
574,560 - -2.5
574,560 - -0.9
574,967 + ABZR87_RS18820 0.20 -0.7
574,967 + ABZR87_RS18820 0.20 +0.2
574,967 + ABZR87_RS18820 0.20 +0.3
574,967 + ABZR87_RS18820 0.20 +0.3
574,967 + ABZR87_RS18820 0.20 -0.7
574,968 - ABZR87_RS18820 0.20 +1.3
574,968 - ABZR87_RS18820 0.20 -0.4
575,003 + ABZR87_RS18820 0.22 +0.7
575,003 + ABZR87_RS18820 0.22 -0.8
575,003 + ABZR87_RS18820 0.22 -0.6
575,003 + ABZR87_RS18820 0.22 -0.9
575,004 - ABZR87_RS18820 0.22 +0.8
575,004 - ABZR87_RS18820 0.22 -1.3
575,004 - ABZR87_RS18820 0.22 -2.5
575,018 + ABZR87_RS18820 0.22 +0.3
575,019 - ABZR87_RS18820 0.22 -0.8
575,735 + ABZR87_RS18820 0.56 -0.5
575,735 + ABZR87_RS18820 0.56 -0.4
576,000 + ABZR87_RS18820 0.69 -0.0
576,001 - ABZR87_RS18820 0.69 -1.1
576,177 - ABZR87_RS18820 0.77 -0.0
576,806 + -0.0
576,806 + -1.4
576,806 + -1.0
576,807 - -0.1
576,807 - +0.3
576,807 - -0.1
576,820 + -0.7
576,820 + -2.9
576,820 + -0.5
576,820 + -0.7
576,820 + +0.2
576,820 + -0.6
576,820 + -1.6
576,820 + +0.7
576,820 + +0.4
576,820 + +0.4
576,821 - +1.4
576,821 - -1.4
576,821 - -0.4
576,821 - -1.1
576,821 - -0.8
576,821 - +1.1
576,821 - +0.3
576,821 - +1.2
576,821 - +0.5
576,821 - +1.0
576,934 + -0.6
576,934 + +0.8
577,060 + ABZR87_RS18825 0.14 -1.9
577,060 + ABZR87_RS18825 0.14 +0.7
577,060 + ABZR87_RS18825 0.14 +1.3
577,061 - ABZR87_RS18825 0.14 -1.5
577,061 - ABZR87_RS18825 0.14 +0.2
577,108 + ABZR87_RS18825 0.18 -1.1
577,108 + ABZR87_RS18825 0.18 -2.7
577,109 - ABZR87_RS18825 0.18 +0.6
577,109 - ABZR87_RS18825 0.18 -0.7
577,112 - ABZR87_RS18825 0.19 -0.8
577,112 - ABZR87_RS18825 0.19 -2.7
577,138 + ABZR87_RS18825 0.21 -1.2
577,138 + ABZR87_RS18825 0.21 -0.6
577,149 + ABZR87_RS18825 0.22 +1.2
577,149 + ABZR87_RS18825 0.22 -0.2
577,149 + ABZR87_RS18825 0.22 -0.9
577,149 + ABZR87_RS18825 0.22 +1.1
577,149 + ABZR87_RS18825 0.22 -0.5
577,149 + ABZR87_RS18825 0.22 -0.9
577,149 + ABZR87_RS18825 0.22 -1.2
577,150 - ABZR87_RS18825 0.22 -0.6
577,183 + ABZR87_RS18825 0.25 -0.0
577,183 + ABZR87_RS18825 0.25 +0.2
577,183 + ABZR87_RS18825 0.25 -0.9
577,184 - ABZR87_RS18825 0.25 +1.5
577,184 - ABZR87_RS18825 0.25 +0.0
577,184 - ABZR87_RS18825 0.25 -0.1
577,198 + ABZR87_RS18825 0.26 -2.4
577,198 + ABZR87_RS18825 0.26 -0.1
577,198 + ABZR87_RS18825 0.26 -0.3
577,198 + ABZR87_RS18825 0.26 +0.4
577,198 + ABZR87_RS18825 0.26 +1.0
577,198 + ABZR87_RS18825 0.26 +0.2
577,198 + ABZR87_RS18825 0.26 +1.0
577,198 + ABZR87_RS18825 0.26 +0.6
577,199 - ABZR87_RS18825 0.26 +0.1
577,199 - ABZR87_RS18825 0.26 +0.2
577,199 - ABZR87_RS18825 0.26 +1.6
577,199 - ABZR87_RS18825 0.26 +0.1
577,199 - ABZR87_RS18825 0.26 +0.0
577,219 + ABZR87_RS18825 0.28 -0.2
577,220 - ABZR87_RS18825 0.28 -0.9
577,220 - ABZR87_RS18825 0.28 +0.6

Or see this region's nucleotide sequence